Wall clock time and date at job start Mon Mar 30 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15 19 19 C 1.53004 * 109.47047 * 179.97438 * 18 17 16 20 20 C 1.53787 * 113.61365 * 274.13829 * 19 18 17 21 21 C 1.53949 * 87.01783 * 220.04775 * 20 19 18 22 22 C 1.53780 * 87.11575 * 25.36351 * 21 20 19 23 23 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.95233 * 359.97438 * 13 12 11 30 30 H 1.08007 * 119.93154 * 180.25528 * 14 13 12 31 31 H 1.07998 * 119.98115 * 179.70100 * 15 14 13 32 32 H 0.96996 * 120.00573 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47152 * 299.99447 * 18 17 16 34 34 H 1.08998 * 109.47401 * 60.00314 * 18 17 16 35 35 H 1.08999 * 112.85027 * 45.33152 * 19 18 17 36 36 H 1.08999 * 113.61140 * 334.56382 * 20 19 18 37 37 H 1.09000 * 113.61773 * 105.46580 * 20 19 18 38 38 H 1.09005 * 113.53637 * 270.81022 * 21 20 19 39 39 H 1.08999 * 113.66815 * 139.93634 * 21 20 19 40 40 H 1.08994 * 113.61193 * 220.09615 * 22 21 20 41 41 H 1.08993 * 113.69245 * 89.19659 * 22 21 20 42 42 H 1.07998 * 120.06257 * 359.97421 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 -0.0006 18 6 2.5730 -10.9092 -0.0002 19 6 1.6450 -12.1257 -0.0009 20 6 1.1896 -12.5539 1.4042 21 6 1.3710 -14.0080 0.9322 22 6 2.3897 -13.4686 -0.0857 23 6 1.6419 -7.2743 -0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1468 -5.0047 -0.0090 30 1 5.4894 -7.0660 0.0023 31 1 4.3797 -9.2618 0.0014 32 1 0.8025 -9.7372 -0.0016 33 1 3.2028 -10.9318 -0.8895 34 1 3.2009 -10.9323 0.8905 35 1 0.8274 -12.0339 -0.7158 36 1 1.8807 -12.2621 2.1950 37 1 0.1552 -12.2919 1.6267 38 1 0.4775 -14.4314 0.4733 39 1 1.8109 -14.6610 1.6860 40 1 2.3226 -13.9439 -1.0642 41 1 3.4099 -13.4269 0.2957 42 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149511182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:25 Heat of formation + Delta-G solvation = -27.106802 kcal Electronic energy + Delta-G solvation = -19870.286274 eV Core-core repulsion = 16814.637067 eV Total energy + Delta-G solvation = -3055.649208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04850 -39.98756 -38.74008 -35.85512 -35.33419 -32.57318 -31.38247 -30.12826 -28.04859 -26.89286 -26.44416 -24.17810 -23.84523 -22.71459 -21.71264 -20.33694 -19.28803 -18.30154 -17.47173 -16.91368 -16.86116 -16.61339 -16.55690 -16.32512 -15.50512 -15.18265 -15.02441 -14.43343 -14.32974 -14.24601 -14.07402 -13.31216 -13.29876 -13.18411 -12.95957 -12.79311 -12.52622 -12.47031 -12.34581 -11.98517 -11.66270 -11.53867 -11.45851 -11.36648 -11.19376 -11.17144 -10.76846 -10.62638 -9.21493 -8.33232 -8.26625 -6.40209 0.57468 0.70181 1.41069 1.42322 1.55979 2.17985 2.40803 2.75647 2.96900 3.07646 3.69387 3.75345 3.81636 3.99534 4.01314 4.26531 4.28899 4.29248 4.34257 4.38386 4.51586 4.55585 4.68490 4.74083 4.75457 4.88586 4.89761 4.95506 5.04601 5.10312 5.14126 5.28843 5.33504 5.36740 5.47251 5.52863 5.59963 5.64822 5.67351 5.77790 6.07519 6.42665 6.62564 6.74789 6.82046 7.29778 8.86844 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050929 B = 0.002432 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.655553 B =11512.695446 C =11932.099163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.001 4.001 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.152 3.848 13 C -0.283 4.283 14 C -0.032 4.032 15 C -0.238 4.238 16 C 0.252 3.748 17 N -0.740 5.740 18 C 0.136 3.864 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.127 4.127 23 C -0.254 4.254 24 H 0.267 0.733 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.403 0.597 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -28.041 0.550 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.257 6.257 12 C 0.105 3.895 13 C -0.303 4.303 14 C -0.050 4.050 15 C -0.261 4.261 16 C 0.146 3.854 17 N -0.369 5.369 18 C 0.012 3.988 19 C -0.140 4.140 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.165 4.165 23 C -0.278 4.278 24 H 0.076 0.924 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.431 -28.093 0.551 29.065 hybrid contribution -0.471 1.289 0.008 1.372 sum 6.960 -26.805 0.558 27.699 Atomic orbital electron populations 1.70136 1.08060 1.28159 1.50727 1.26076 0.95871 1.03773 0.94180 0.85204 0.79035 0.77735 0.77881 1.18099 1.20193 1.20200 1.21428 0.93843 0.90980 1.51967 0.91101 1.18979 0.94568 0.91463 0.95950 1.22844 0.95325 0.80146 1.00499 1.86052 1.37720 1.13896 1.88013 1.19156 0.90871 0.86166 0.93274 1.21226 0.92346 1.00664 1.16086 1.20970 1.00458 0.90678 0.92912 1.20751 0.92124 0.98758 1.14457 1.17463 0.91921 0.84984 0.90998 1.44720 1.08711 1.01802 1.81639 1.21471 0.93825 0.82111 1.01354 1.22774 0.99014 0.93613 0.98638 1.23042 1.01606 0.96855 0.96287 1.22848 0.99750 0.96168 0.99131 1.22873 0.98959 0.94429 1.00239 1.19785 0.99877 0.89190 1.18945 0.92444 0.98371 0.98362 0.92249 0.92252 0.86015 0.83221 0.83783 0.76201 0.91836 0.91850 0.88676 0.90168 0.91798 0.89864 0.90895 0.90703 0.89209 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.98 44.18 29.54 68.60 2.03 46.21 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.09 3.98 4.68 71.98 0.34 4.31 16 11 O -0.34 -15.52 10.13 -92.39 -0.94 -16.45 16 12 C 0.15 5.76 6.68 22.49 0.15 5.91 16 13 C -0.28 -9.36 9.04 22.39 0.20 -9.16 16 14 C -0.03 -0.82 10.03 22.23 0.22 -0.59 16 15 C -0.24 -5.67 9.31 22.42 0.21 -5.46 16 16 C 0.25 6.55 6.65 38.20 0.25 6.80 16 17 N -0.74 -14.14 5.73 -339.46 -1.95 -16.09 16 18 C 0.14 1.86 4.74 86.38 0.41 2.27 16 19 C -0.12 -1.31 3.75 -10.26 -0.04 -1.35 16 20 C -0.14 -1.54 7.65 31.18 0.24 -1.30 16 21 C -0.14 -1.25 8.09 31.18 0.25 -1.00 16 22 C -0.13 -1.08 7.65 31.12 0.24 -0.84 16 23 C -0.25 -8.33 9.83 22.49 0.22 -8.11 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 2.59 7.67 -2.39 -0.02 2.57 16 28 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16 29 H 0.12 4.03 6.29 -2.91 -0.02 4.01 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 31 H 0.14 2.56 6.73 -2.91 -0.02 2.54 16 32 H 0.40 7.03 8.48 -92.71 -0.79 6.24 16 33 H 0.06 0.85 7.95 -2.39 -0.02 0.83 16 34 H 0.06 0.85 7.68 -2.39 -0.02 0.84 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 0.93 7.92 -2.39 -0.02 0.91 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 42 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -68.03 345.62 3.19 -64.84 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.21 Total: 16.35 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.55 Total: -37.57 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.66 Total: -73.37 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.94 Total: -16.45 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.03 3.19 -64.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149511182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.734 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds