Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46946 * 59.99897 * 8 6 4 10 10 H 1.48506 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99580 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.37975 * 119.88138 * 260.00270 * 13 12 2 15 15 C 1.38249 * 120.34951 * 179.97438 * 14 13 12 16 16 C 1.38393 * 119.77010 * 359.83809 * 15 14 13 17 17 C 1.37703 * 119.97421 * 359.97438 * 16 15 14 18 18 C 1.38922 * 120.78666 * 0.08500 * 17 16 15 19 19 O 1.36130 * 111.20791 * 179.31495 * 18 17 16 20 20 C 1.43777 * 109.20409 * 19.60238 * 19 18 17 21 21 C 1.53000 * 110.75038 * 90.42157 * 20 19 18 22 22 C 1.53004 * 110.75147 * 213.58664 * 20 19 18 23 23 C 1.51637 * 132.17228 * 180.90712 * 17 16 15 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.07997 * 119.82606 * 0.02562 * 14 13 12 33 33 H 1.08006 * 120.11210 * 179.85185 * 15 14 13 34 34 H 1.07991 * 120.00996 * 180.02562 * 16 15 14 35 35 H 1.09007 * 109.47253 * 61.45306 * 21 20 19 36 36 H 1.08998 * 109.47266 * 181.45350 * 21 20 19 37 37 H 1.09005 * 109.47458 * 301.45356 * 21 20 19 38 38 H 1.09000 * 109.46597 * 58.54722 * 22 20 19 39 39 H 1.08993 * 109.47574 * 178.54549 * 22 20 19 40 40 H 1.09000 * 109.47237 * 298.55147 * 22 20 19 41 41 H 1.09003 * 110.93869 * 282.54647 * 23 17 16 42 42 H 1.09006 * 110.94122 * 46.22311 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.1758 3.4297 4.2698 10 1 2.1150 5.5733 3.1381 11 1 0.1058 4.2230 3.2866 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 2.5751 -3.1090 -0.4892 15 6 2.2565 -4.4453 -0.3337 16 6 0.9885 -4.8921 -0.6622 17 6 0.0496 -4.0062 -1.1415 18 6 0.3582 -2.6613 -1.3032 19 8 -0.7030 -1.9689 -1.8008 20 6 -1.9073 -2.7201 -1.5715 21 6 -2.5334 -2.3434 -0.2272 22 6 -2.9055 -2.5053 -2.7110 23 6 -1.3966 -4.1837 -1.5614 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 3.5632 -2.7587 -0.2299 33 1 2.9945 -5.1380 0.0430 34 1 0.7353 -5.9350 -0.5419 35 1 -2.7993 -1.2863 -0.2337 36 1 -3.4291 -2.9424 -0.0630 37 1 -1.8178 -2.5331 0.5729 38 1 -2.4509 -2.8086 -3.6541 39 1 -3.7986 -3.1031 -2.5293 40 1 -3.1779 -1.4511 -2.7615 41 1 -1.4622 -4.6366 -2.5508 42 1 -1.9458 -4.7736 -0.8275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157782649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = -4.561795 kcal Electronic energy + Delta-G solvation = -21933.329235 eV Core-core repulsion = 18878.657653 eV Total energy + Delta-G solvation = -3054.671583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33719 -37.80020 -36.24824 -33.76775 -32.60198 -31.48629 -30.29762 -27.71424 -27.11147 -26.54858 -26.19083 -23.69292 -22.02139 -20.98751 -20.54563 -19.74340 -17.06787 -16.40396 -15.96920 -15.94538 -15.25426 -14.73458 -14.29032 -14.21370 -13.85049 -13.64160 -13.45115 -13.01324 -12.88023 -12.51733 -12.44134 -12.16022 -12.07381 -11.81729 -11.74750 -11.63797 -11.24878 -10.96925 -10.94329 -10.82553 -10.80294 -10.56784 -10.40711 -10.14212 -9.74633 -9.16672 -8.53927 -8.36657 -7.91053 -7.10205 -5.96797 -3.97655 1.49020 1.56801 3.31719 3.37034 3.40448 3.43888 3.87876 4.38554 4.45891 4.48353 4.73353 4.92003 4.98009 5.18782 5.28378 5.33733 5.36909 5.40270 5.43261 5.50996 5.59279 5.62930 5.68281 5.75820 5.88992 5.95569 6.01078 6.14633 6.16847 6.35155 6.43803 6.53366 6.57059 6.60771 6.78809 6.91085 6.94199 7.36715 7.41614 7.44655 7.86696 8.16115 8.30673 8.63461 9.09813 9.65932 11.14145 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.004942 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.652305 B = 5664.762613 C = 6365.402925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.094 3.906 13 C -0.079 4.079 14 C -0.072 4.072 15 C -0.151 4.151 16 C -0.081 4.081 17 C -0.181 4.181 18 C 0.117 3.883 19 O -0.289 6.289 20 C 0.100 3.900 21 C -0.164 4.164 22 C -0.141 4.141 23 C -0.097 4.097 24 H 0.011 0.989 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.029 0.971 28 H -0.010 1.010 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -18.235 -5.443 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.035 4.035 13 C -0.080 4.080 14 C -0.090 4.090 15 C -0.169 4.169 16 C -0.100 4.100 17 C -0.182 4.182 18 C 0.072 3.928 19 O -0.204 6.204 20 C 0.062 3.938 21 C -0.221 4.221 22 C -0.198 4.198 23 C -0.134 4.134 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.031 -18.036 -5.160 20.406 hybrid contribution -0.473 0.861 0.176 0.998 sum -8.503 -17.175 -4.984 19.802 Atomic orbital electron populations 1.22407 0.88651 1.00102 1.00011 1.62203 1.07336 1.17380 1.38901 1.19745 0.95296 0.81630 0.96582 1.21123 1.34612 0.96858 1.01658 0.92010 1.24982 0.95388 0.97319 0.96943 1.69955 1.38520 1.11427 1.34090 0.86567 0.78653 0.78314 0.83901 1.20181 1.21371 1.20346 1.20940 1.00121 0.88860 0.93531 1.19280 0.90900 0.96810 1.00994 1.20816 0.99065 0.92422 0.96708 1.20958 0.96384 0.95890 1.03691 1.20171 0.92582 0.98502 0.98712 1.20680 0.96777 0.93961 1.06786 1.19263 0.89292 0.89563 0.94729 1.86989 1.13774 1.45262 1.74360 1.22764 0.85343 0.89195 0.96484 1.22224 1.00997 1.03097 0.95758 1.21826 0.97615 1.03402 0.96926 1.21878 0.92314 0.96823 1.02405 0.97014 0.92464 0.91800 0.95302 0.99196 0.92943 0.94937 0.90594 0.85139 0.85840 0.86456 0.90894 0.91114 0.91497 0.91652 0.90620 0.91153 0.89507 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 8.17 60.06 0.49 1.29 16 2 N -0.53 -12.45 4.74 -245.82 -1.17 -13.62 16 3 C 0.19 5.26 4.72 -4.97 -0.02 5.24 16 4 C -0.50 -14.67 8.52 -34.44 -0.29 -14.97 16 5 H 0.06 1.79 7.10 -52.48 -0.37 1.41 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.09 1.87 5.14 -4.98 -0.03 1.85 16 13 C -0.08 -1.37 5.19 -104.35 -0.54 -1.91 16 14 C -0.07 -1.08 9.63 -39.67 -0.38 -1.46 16 15 C -0.15 -1.93 10.07 -39.52 -0.40 -2.33 16 16 C -0.08 -1.01 10.03 -39.72 -0.40 -1.41 16 17 C -0.18 -2.49 6.27 -104.10 -0.65 -3.14 16 18 C 0.12 1.92 5.12 -38.96 -0.20 1.72 16 19 O -0.29 -4.67 8.39 -20.15 -0.17 -4.84 16 20 C 0.10 1.20 1.26 -89.55 -0.11 1.09 16 21 C -0.16 -1.88 7.87 37.16 0.29 -1.59 16 22 C -0.14 -1.33 8.96 37.16 0.33 -1.00 16 23 C -0.10 -1.05 6.20 -26.35 -0.16 -1.22 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 1.11 3.02 -51.93 -0.16 0.95 16 26 H 0.06 1.46 6.86 -51.93 -0.36 1.11 16 27 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 28 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 1.45 7.78 -51.93 -0.40 1.05 16 32 H 0.13 1.80 8.02 -52.49 -0.42 1.38 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 38 H 0.06 0.61 8.11 -51.93 -0.42 0.18 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.83 7.93 -51.93 -0.41 0.41 16 42 H 0.09 0.78 7.92 -51.93 -0.41 0.36 16 LS Contribution 333.59 15.07 5.03 5.03 Total: -1.00 -32.19 333.59 -9.47 -41.66 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.70 Total: -2.37 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.17 Total: -16.35 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.43 Total: -40.25 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.17 Total: -4.84 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.19 -9.47 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157782649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.095 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds