Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46946 * 59.99897 * 8 6 4 10 10 H 1.48506 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99580 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.37975 * 119.88138 * 260.00270 * 13 12 2 15 15 C 1.38249 * 120.34951 * 179.97438 * 14 13 12 16 16 C 1.38393 * 119.77010 * 359.83809 * 15 14 13 17 17 C 1.37703 * 119.97421 * 359.97438 * 16 15 14 18 18 C 1.38922 * 120.78666 * 0.08500 * 17 16 15 19 19 O 1.36130 * 111.20791 * 179.31495 * 18 17 16 20 20 C 1.43777 * 109.20409 * 19.60238 * 19 18 17 21 21 C 1.53000 * 110.75038 * 90.42157 * 20 19 18 22 22 C 1.53004 * 110.75147 * 213.58664 * 20 19 18 23 23 C 1.51637 * 132.17228 * 180.90712 * 17 16 15 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.07997 * 119.82606 * 0.02562 * 14 13 12 33 33 H 1.08006 * 120.11210 * 179.85185 * 15 14 13 34 34 H 1.07991 * 120.00996 * 180.02562 * 16 15 14 35 35 H 1.09007 * 109.47253 * 61.45306 * 21 20 19 36 36 H 1.08998 * 109.47266 * 181.45350 * 21 20 19 37 37 H 1.09005 * 109.47458 * 301.45356 * 21 20 19 38 38 H 1.09000 * 109.46597 * 58.54722 * 22 20 19 39 39 H 1.08993 * 109.47574 * 178.54549 * 22 20 19 40 40 H 1.09000 * 109.47237 * 298.55147 * 22 20 19 41 41 H 1.09003 * 110.93869 * 282.54647 * 23 17 16 42 42 H 1.09006 * 110.94122 * 46.22311 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.1758 3.4297 4.2698 10 1 2.1150 5.5733 3.1381 11 1 0.1058 4.2230 3.2866 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 2.5751 -3.1090 -0.4892 15 6 2.2565 -4.4453 -0.3337 16 6 0.9885 -4.8921 -0.6622 17 6 0.0496 -4.0062 -1.1415 18 6 0.3582 -2.6613 -1.3032 19 8 -0.7030 -1.9689 -1.8008 20 6 -1.9073 -2.7201 -1.5715 21 6 -2.5334 -2.3434 -0.2272 22 6 -2.9055 -2.5053 -2.7110 23 6 -1.3966 -4.1837 -1.5614 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 3.5632 -2.7587 -0.2299 33 1 2.9945 -5.1380 0.0430 34 1 0.7353 -5.9350 -0.5419 35 1 -2.7993 -1.2863 -0.2337 36 1 -3.4291 -2.9424 -0.0630 37 1 -1.8178 -2.5331 0.5729 38 1 -2.4509 -2.8086 -3.6541 39 1 -3.7986 -3.1031 -2.5293 40 1 -3.1779 -1.4511 -2.7615 41 1 -1.4622 -4.6366 -2.5508 42 1 -1.9458 -4.7736 -0.8275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157782649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = -24.348981 kcal Electronic energy + Delta-G solvation = -21934.187272 eV Core-core repulsion = 18878.657653 eV Total energy + Delta-G solvation = -3055.529620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39550 -39.04648 -37.89558 -35.02313 -34.48818 -32.71324 -31.50657 -29.23548 -28.59560 -27.85328 -27.37918 -25.58624 -23.14265 -22.64900 -21.51764 -21.22600 -18.59099 -18.08211 -17.20224 -17.12088 -16.67650 -16.41702 -15.75882 -15.69119 -15.32183 -14.94488 -14.67539 -14.24172 -14.02664 -13.81123 -13.65183 -13.45839 -13.34417 -13.19527 -12.95014 -12.90481 -12.67519 -12.66595 -12.51058 -12.38045 -12.24040 -12.05056 -11.85004 -11.60815 -11.43901 -11.25577 -10.63983 -9.67220 -9.14183 -8.93171 -8.22262 -6.33547 0.39203 0.46357 1.38730 1.43076 1.51112 2.32630 2.38742 2.76498 3.09371 3.46992 3.49155 3.57722 3.87800 3.89246 3.99887 4.08830 4.29277 4.37169 4.49915 4.53379 4.61859 4.66559 4.68184 4.70364 4.74220 4.76538 4.83910 4.89441 5.03248 5.06718 5.11628 5.13238 5.21910 5.25556 5.28673 5.48933 5.52324 5.60980 5.65865 5.85803 5.99954 6.26928 6.35523 6.56198 6.81180 7.35926 8.88902 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.004942 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.652305 B = 5664.762613 C = 6365.402925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.973 3.027 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.099 3.901 13 C -0.112 4.112 14 C -0.084 4.084 15 C -0.145 4.145 16 C -0.074 4.074 17 C -0.182 4.182 18 C 0.094 3.906 19 O -0.320 6.320 20 C 0.087 3.913 21 C -0.162 4.162 22 C -0.137 4.137 23 C -0.088 4.088 24 H -0.003 1.003 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.006 0.994 28 H -0.044 1.044 29 H 0.266 0.734 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -21.037 -4.298 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.193 1.193 12 C -0.029 4.029 13 C -0.114 4.114 14 C -0.102 4.102 15 C -0.163 4.163 16 C -0.092 4.092 17 C -0.183 4.183 18 C 0.048 3.952 19 O -0.236 6.236 20 C 0.050 3.950 21 C -0.219 4.219 22 C -0.194 4.194 23 C -0.125 4.125 24 H 0.016 0.984 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.024 0.976 28 H -0.026 1.026 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.512 -20.862 -4.025 23.279 hybrid contribution -0.016 1.649 -0.251 1.668 sum -9.528 -19.212 -4.275 21.867 Atomic orbital electron populations 1.22311 0.87698 1.01392 0.98392 1.62157 1.08176 1.15017 1.40849 1.19420 0.93710 0.83654 0.95085 1.21385 1.35179 0.97685 1.02126 0.92123 1.25958 0.94846 0.97857 1.00969 1.70090 1.39198 1.11914 1.36309 0.85384 0.78809 0.77223 0.78884 1.19119 1.20473 1.19281 1.20879 0.99630 0.90869 0.91478 1.19165 0.92715 0.95043 1.04433 1.20978 0.98846 0.93538 0.96871 1.21335 0.97455 0.95051 1.02422 1.20654 0.91820 1.00099 0.96605 1.21111 0.98530 0.92766 1.05917 1.19468 0.89042 0.91157 0.95515 1.86961 1.15085 1.46949 1.74589 1.23154 0.84511 0.89923 0.97441 1.22236 1.01842 1.02833 0.94989 1.21859 0.98133 1.03300 0.96081 1.21946 0.90383 0.96078 1.04080 0.98445 0.89724 0.93375 0.97555 1.02603 0.92563 0.96651 0.90820 0.84911 0.82589 0.82658 0.92474 0.87662 0.93470 0.91586 0.87401 0.92399 0.87720 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.30 8.17 127.69 1.04 3.34 16 2 N -0.54 -26.55 4.74 -931.65 -4.42 -30.97 16 3 C 0.21 12.09 4.72 85.56 0.40 12.49 16 4 C -0.53 -31.70 8.52 25.60 0.22 -31.48 16 5 H 0.06 3.60 7.10 -2.91 -0.02 3.58 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 8 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 C 0.10 4.24 5.14 85.55 0.44 4.68 16 13 C -0.11 -4.01 5.19 -19.69 -0.10 -4.11 16 14 C -0.08 -2.49 9.63 22.21 0.21 -2.27 16 15 C -0.14 -3.29 10.07 22.31 0.22 -3.06 16 16 C -0.07 -1.56 10.03 22.18 0.22 -1.33 16 17 C -0.18 -4.55 6.27 -19.53 -0.12 -4.67 16 18 C 0.09 3.05 5.12 22.68 0.12 3.17 16 19 O -0.32 -10.47 8.39 -95.03 -0.80 -11.27 16 20 C 0.09 1.94 1.26 -10.10 -0.01 1.93 16 21 C -0.16 -3.49 7.87 71.98 0.57 -2.92 16 22 C -0.14 -2.33 8.96 71.98 0.64 -1.69 16 23 C -0.09 -1.60 6.20 30.84 0.19 -1.41 16 24 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.08 3.41 3.02 -2.39 -0.01 3.40 16 26 H 0.05 2.30 6.86 -2.39 -0.02 2.28 16 27 H 0.01 0.39 7.93 -2.38 -0.02 0.37 16 28 H -0.04 -2.78 8.12 -2.39 -0.02 -2.80 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.07 3.06 7.78 -2.39 -0.02 3.05 16 32 H 0.13 3.71 8.02 -2.91 -0.02 3.69 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.16 2.12 8.06 -2.92 -0.02 2.09 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.19 7.66 -2.38 -0.02 1.17 16 38 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.56 7.93 -2.39 -0.02 1.54 16 42 H 0.11 1.47 7.92 -2.38 -0.02 1.45 16 Total: -1.00 -73.02 333.59 2.59 -70.43 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.99 Total: 8.92 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 4.51 Total: -26.80 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -4.14 Total: -89.12 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.80 Total: -11.27 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.02 2.59 -70.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157782649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.086 kcal (2) G-P(sol) polarization free energy of solvation -73.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds