Wall clock time and date at job start Mon Mar 30 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00110 * 2 1 4 4 H 1.48499 * 109.46975 * 239.99896 * 3 2 1 5 5 H 1.48494 * 109.46704 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47164 * 119.99731 * 3 2 1 7 7 C 1.37871 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00602 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00188 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47303 * 184.95914 * 9 7 2 11 11 C 1.46900 * 111.00146 * 63.44223 * 10 9 7 12 12 C 1.50702 * 109.47001 * 66.04029 * 11 10 9 13 13 C 1.34522 * 125.78595 * 90.00355 * 12 11 10 14 14 C 1.41381 * 106.83738 * 179.97438 * 13 12 11 15 15 C 1.34510 * 106.84210 * 0.02562 * 14 13 12 16 16 O 1.34293 * 125.79540 * 269.69443 * 12 11 10 17 17 C 1.46892 * 111.00392 * 299.48714 * 10 9 7 18 18 C 1.53005 * 109.47265 * 288.08831 * 17 10 9 19 19 H 1.08997 * 109.63683 * 57.30097 * 18 17 10 20 20 C 1.53022 * 109.63912 * 296.88596 * 18 17 10 21 21 C 1.50069 * 110.14670 * 190.88006 * 20 18 17 22 22 C 1.29440 * 124.07518 * 17.12548 * 21 20 18 23 23 C 1.50071 * 124.07682 * 359.51474 * 22 21 20 24 24 C 1.53036 * 110.13731 * 17.16334 * 23 22 21 25 25 H 0.97000 * 119.99982 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46784 * 64.95850 * 9 7 2 27 27 H 1.08999 * 109.46825 * 304.96447 * 9 7 2 28 28 H 1.09003 * 109.47231 * 306.04516 * 11 10 9 29 29 H 1.08997 * 109.47364 * 186.04576 * 11 10 9 30 30 H 1.07999 * 126.57977 * 0.04061 * 13 12 11 31 31 H 1.08001 * 126.57748 * 179.97438 * 14 13 12 32 32 H 1.08008 * 125.78690 * 179.97438 * 15 14 13 33 33 H 1.09005 * 109.47188 * 48.08488 * 17 10 9 34 34 H 1.08996 * 109.47808 * 168.08675 * 17 10 9 35 35 H 1.09004 * 109.35724 * 311.08302 * 20 18 17 36 36 H 1.09004 * 109.36135 * 70.80662 * 20 18 17 37 37 H 1.08001 * 117.96475 * 197.15584 * 21 20 18 38 38 H 1.08002 * 117.96450 * 179.53465 * 22 21 20 39 39 H 1.08994 * 109.35808 * 137.35938 * 23 22 21 40 40 H 1.09002 * 109.35434 * 257.08341 * 23 22 21 41 41 H 1.08999 * 109.63369 * 190.85838 * 24 23 22 42 42 H 1.08999 * 109.65449 * 70.22659 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1209 11 6 2.9146 -3.5601 1.4038 12 6 1.9413 -3.7956 2.5300 13 6 1.6224 -4.9916 3.0570 14 6 0.6797 -4.7491 4.0823 15 6 0.4784 -3.4197 4.1202 16 8 1.2495 -2.8468 3.1817 17 6 3.1437 -3.6251 -1.0056 18 6 2.4159 -4.0726 -2.2749 19 1 1.5717 -3.4102 -2.4659 20 6 1.9147 -5.5079 -2.1014 21 6 1.4375 -6.0513 -3.4164 22 6 1.7350 -5.5349 -4.5654 23 6 2.5903 -4.3146 -4.7427 24 6 3.3842 -4.0373 -3.4641 25 1 -0.4850 0.8400 -0.0004 26 1 0.6930 -2.5965 -0.9308 27 1 0.5590 -2.5192 0.8425 28 1 3.3770 -2.5802 1.5223 29 1 3.6856 -4.3303 1.4228 30 1 2.0126 -5.9524 2.7555 31 1 0.2105 -5.4893 4.7134 32 1 -0.1871 -2.9006 4.7941 33 1 3.5473 -2.6232 -1.1524 34 1 3.9581 -4.3169 -0.7907 35 1 2.7264 -6.1312 -1.7261 36 1 1.0909 -5.5192 -1.3877 37 1 0.8061 -6.9274 -3.4032 38 1 1.3432 -6.0118 -5.4517 39 1 3.2819 -4.4752 -5.5696 40 1 1.9548 -3.4572 -4.9645 41 1 3.8500 -3.0539 -3.5282 42 1 4.1506 -4.8015 -3.3354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159554751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:21 Heat of formation + Delta-G solvation = 5.562222 kcal Electronic energy + Delta-G solvation = -21808.195082 eV Core-core repulsion = 18753.962509 eV Total energy + Delta-G solvation = -3054.232573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.30025 -39.92956 -37.91727 -34.61872 -33.77764 -32.87168 -31.54579 -30.89906 -28.81418 -26.79898 -25.87174 -24.01535 -22.99923 -22.43408 -21.22284 -20.95349 -18.71864 -18.64042 -17.85605 -17.10979 -16.85106 -16.63564 -15.91762 -15.71976 -15.45285 -15.10361 -14.48185 -14.24542 -14.14897 -13.57564 -13.51972 -13.47315 -13.34979 -13.11938 -13.08963 -12.79676 -12.73959 -12.56734 -12.31920 -12.13790 -11.96423 -11.73687 -11.30524 -11.11805 -10.89854 -10.67598 -10.54349 -9.75155 -9.29824 -8.94715 -8.11702 -6.29554 0.97702 1.34507 1.36121 1.43276 1.52183 1.86063 2.36795 2.38159 3.13820 3.45346 3.93111 3.96087 3.98672 4.11593 4.28848 4.32271 4.46045 4.53372 4.57039 4.61325 4.66893 4.72075 4.80065 4.89704 5.03391 5.04271 5.09087 5.13202 5.17184 5.20334 5.28945 5.31132 5.37080 5.42287 5.52966 5.63992 5.79559 5.81817 5.89977 6.06383 6.18636 6.24363 6.48129 6.54470 6.89902 7.40199 8.90712 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.007374 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.904176 B = 3796.278292 C = 5650.595169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.210 3.790 10 N -0.529 5.529 11 C 0.134 3.866 12 C -0.008 4.008 13 C -0.210 4.210 14 C -0.218 4.218 15 C -0.067 4.067 16 O -0.200 6.200 17 C 0.067 3.933 18 C -0.074 4.074 19 H 0.035 0.965 20 C -0.068 4.068 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.090 4.090 24 C -0.109 4.109 25 H 0.262 0.738 26 H -0.001 1.001 27 H 0.001 0.999 28 H 0.033 0.967 29 H 0.119 0.881 30 H 0.165 0.835 31 H 0.174 0.826 32 H 0.221 0.779 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -11.856 -1.163 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.083 3.917 10 N -0.252 5.252 11 C 0.007 3.993 12 C -0.059 4.059 13 C -0.230 4.230 14 C -0.237 4.237 15 C -0.134 4.134 16 O -0.096 6.096 17 C -0.061 4.061 18 C -0.093 4.093 19 H 0.054 0.946 20 C -0.105 4.105 21 C -0.180 4.180 22 C -0.184 4.184 23 C -0.127 4.127 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.182 0.818 31 H 0.191 0.809 32 H 0.237 0.763 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.545 -11.880 -1.250 13.170 hybrid contribution 0.069 1.950 0.226 1.964 sum 5.614 -9.930 -1.025 11.453 Atomic orbital electron populations 1.70073 1.07545 1.27502 1.51377 1.25735 0.95492 1.02554 0.94801 0.85745 0.78542 0.79373 0.78873 1.19212 1.20963 1.19829 1.21878 0.93209 0.92909 1.50629 0.92428 1.19276 0.91284 0.86462 0.94641 1.62503 1.17365 1.44531 1.00839 1.20488 0.92042 1.01346 0.85442 1.22642 0.98767 0.87085 0.97368 1.21775 1.02959 0.98114 1.00140 1.22097 1.02855 0.96116 1.02615 1.24669 0.99070 0.94437 0.95219 1.84160 1.46094 1.38734 1.40587 1.22075 0.94201 0.99436 0.90395 1.21034 0.97611 0.96563 0.94103 0.94601 1.20261 1.00665 0.94602 0.94952 1.22293 1.00496 1.00594 0.94620 1.22192 1.00283 0.98010 0.97888 1.20456 0.98029 0.96070 0.98136 1.21583 0.97628 1.01709 0.93736 0.92955 0.98260 0.98095 0.94829 0.86266 0.81769 0.80877 0.76278 0.95530 0.89767 0.90092 0.92525 0.87197 0.86703 0.89247 0.92288 0.92357 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.44 0.28 -56.31 16 2 C 0.01 0.77 5.46 84.65 0.46 1.23 16 3 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.55 -30.53 7.34 25.60 0.19 -30.34 16 8 H 0.06 3.12 5.95 -2.91 -0.02 3.11 16 9 C 0.21 11.19 4.80 85.56 0.41 11.60 16 10 N -0.53 -22.11 4.25 -905.37 -3.84 -25.96 16 11 C 0.13 5.18 5.32 85.56 0.45 5.63 16 12 C -0.01 -0.33 5.88 24.84 0.15 -0.18 16 13 C -0.21 -6.96 10.81 22.19 0.24 -6.72 16 14 C -0.22 -6.59 10.91 22.19 0.24 -6.35 16 15 C -0.07 -2.26 12.09 66.97 0.81 -1.45 16 16 O -0.20 -8.79 9.96 -2.35 -0.02 -8.81 16 17 C 0.07 2.41 4.21 86.31 0.36 2.77 16 18 C -0.07 -2.52 2.23 -10.65 -0.02 -2.55 16 19 H 0.04 1.53 6.65 -2.39 -0.02 1.51 16 20 C -0.07 -2.04 5.17 29.66 0.15 -1.89 16 21 C -0.16 -4.30 9.80 27.04 0.27 -4.04 16 22 C -0.17 -4.10 9.80 27.04 0.27 -3.83 16 23 C -0.09 -2.25 6.12 29.66 0.18 -2.06 16 24 C -0.11 -2.99 5.31 30.74 0.16 -2.82 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.00 -0.04 6.64 -2.38 -0.02 -0.05 16 27 H 0.00 0.05 6.64 -2.39 -0.02 0.04 16 28 H 0.03 1.45 6.63 -2.39 -0.02 1.44 16 29 H 0.12 3.59 7.86 -2.39 -0.02 3.57 16 30 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.22 5.68 8.06 -2.91 -0.02 5.65 16 33 H 0.03 1.09 6.11 -2.38 -0.01 1.08 16 34 H 0.08 2.49 7.80 -2.39 -0.02 2.47 16 35 H 0.08 2.15 8.10 -2.38 -0.02 2.13 16 36 H 0.06 1.97 8.02 -2.38 -0.02 1.95 16 37 H 0.11 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -67.40 335.15 3.75 -63.65 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.98 Total: 21.51 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 4.32 Total: -41.00 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.56 Total: -82.27 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.02 Total: -8.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.40 3.75 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159554751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.216 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds