Wall clock time and date at job start Mon Mar 30 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38401 * 119.82119 * 2 1 4 4 C 1.37893 * 120.17011 * 179.97438 * 3 2 1 5 5 C 1.39849 * 119.82649 * 359.97438 * 4 3 2 6 6 C 1.47169 * 120.17266 * 179.97438 * 5 4 3 7 7 O 1.21249 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99659 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46808 * 180.02562 * 8 6 5 10 10 N 1.46908 * 109.47190 * 179.97438 * 9 8 6 11 11 C 1.46897 * 110.99792 * 66.04348 * 10 9 8 12 12 C 1.46891 * 110.99774 * 189.99971 * 10 9 8 13 13 H 1.09006 * 109.47638 * 299.99968 * 12 10 9 14 14 C 1.53003 * 109.47499 * 60.00101 * 12 10 9 15 15 C 1.50702 * 109.46941 * 179.97438 * 12 10 9 16 16 H 1.08007 * 119.99987 * 354.30080 * 15 12 10 17 17 C 1.37880 * 120.00047 * 174.29657 * 15 12 10 18 18 N 1.31516 * 119.99821 * 157.45421 * 17 15 12 19 19 Si 1.86800 * 120.00249 * 337.73257 * 17 15 12 20 20 H 1.48496 * 109.46923 * 269.72580 * 19 17 15 21 21 H 1.48498 * 109.46775 * 29.72214 * 19 17 15 22 22 H 1.48496 * 109.47036 * 149.71850 * 19 17 15 23 23 C 1.39861 * 119.65515 * 0.25068 * 5 4 3 24 24 C 1.37882 * 119.82198 * 359.47206 * 23 5 4 25 25 H 1.08994 * 109.47246 * 90.00717 * 1 2 3 26 26 H 1.09007 * 109.46850 * 209.99862 * 1 2 3 27 27 H 1.09000 * 109.47584 * 330.00017 * 1 2 3 28 28 H 1.08000 * 119.92012 * 359.97064 * 3 2 1 29 29 H 1.08007 * 120.08370 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47719 * 60.00547 * 8 6 5 31 31 H 1.09005 * 109.47232 * 300.00053 * 8 6 5 32 32 H 1.09003 * 109.47275 * 60.00168 * 9 8 6 33 33 H 1.08996 * 109.47144 * 300.00147 * 9 8 6 34 34 H 1.09000 * 109.47191 * 183.95412 * 11 10 9 35 35 H 1.08998 * 109.47566 * 303.95722 * 11 10 9 36 36 H 1.09005 * 109.46960 * 63.95580 * 11 10 9 37 37 H 1.09002 * 109.46507 * 51.60315 * 14 12 10 38 38 H 1.08996 * 109.47152 * 171.60311 * 14 12 10 39 39 H 1.08992 * 109.46953 * 291.60637 * 14 12 10 40 40 H 0.97004 * 120.00081 * 355.23535 * 18 17 15 41 41 H 1.07993 * 120.08520 * 179.72854 * 23 5 4 42 42 H 1.08000 * 119.91426 * 180.24837 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2007 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0002 0.0016 6 6 5.7488 0.0002 0.0016 7 8 6.3549 1.0503 0.0012 8 6 6.5022 -1.3048 0.0034 9 6 8.0065 -1.0252 0.0037 10 7 8.7411 -2.2974 0.0060 11 6 8.5227 -3.0336 -1.2463 12 6 10.1738 -2.0775 0.2444 13 1 10.5796 -1.4410 -0.5419 14 6 10.3665 -1.3973 1.6013 15 6 10.8927 -3.4020 0.2405 16 1 10.3305 -4.3214 0.1694 17 6 12.2682 -3.4400 0.3275 18 7 12.8698 -4.5254 0.7630 19 14 13.2770 -1.9472 -0.1658 20 1 13.6197 -2.0360 -1.6079 21 1 12.4881 -0.7134 0.0805 22 1 14.5249 -1.9055 0.6380 23 6 3.5742 -1.2090 -0.0032 24 6 2.1954 -1.2007 0.0021 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6510 2.1336 -0.0005 29 1 4.1099 2.1470 0.0001 30 1 6.2391 -1.8776 -0.8859 31 1 6.2389 -1.8752 0.8942 32 1 8.2695 -0.4526 0.8931 33 1 8.2702 -0.4546 -0.8868 34 1 9.0202 -4.0019 -1.1900 35 1 7.4537 -3.1827 -1.3984 36 1 8.9322 -2.4626 -2.0796 37 1 9.8321 -1.9582 2.3681 38 1 11.4283 -1.3686 1.8458 39 1 9.9763 -0.3806 1.5567 40 1 12.3449 -5.2737 1.0879 41 1 4.1100 -2.1466 -0.0068 42 1 1.6512 -2.1335 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160167641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:14 Heat of formation + Delta-G solvation = -14.953994 kcal Electronic energy + Delta-G solvation = -20630.396487 eV Core-core repulsion = 17575.274265 eV Total energy + Delta-G solvation = -3055.122222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22578 -38.61167 -37.10555 -33.37872 -32.99394 -31.55753 -30.85994 -29.48272 -27.88450 -25.68777 -24.20254 -23.08491 -22.88770 -21.42367 -19.55060 -19.18979 -17.42536 -17.11110 -15.93973 -15.59420 -15.49698 -14.91654 -14.52809 -14.17073 -14.07307 -13.83886 -13.70809 -13.50879 -13.16107 -12.93331 -12.57281 -12.35667 -12.12502 -11.90144 -11.73500 -11.46250 -11.34301 -11.21320 -10.85437 -10.80468 -10.33574 -10.25965 -10.07293 -9.72980 -9.62194 -9.26991 -8.97692 -8.82891 -8.20694 -7.31498 -6.43775 -4.00121 0.47253 1.11205 2.32211 3.43582 3.46980 3.55573 3.62262 3.90858 4.46323 4.50231 4.53351 4.69549 4.84809 4.96405 5.08103 5.16011 5.19039 5.26266 5.30962 5.34460 5.39228 5.55433 5.70123 5.74877 5.85058 6.02043 6.05897 6.15751 6.20435 6.22288 6.31325 6.38348 6.53681 6.62310 6.65652 6.67586 6.88355 7.00655 7.37693 7.53285 7.80534 8.04872 8.37689 8.47572 9.01750 9.64511 10.94881 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041550 B = 0.003203 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.722928 B = 8740.128555 C = 9134.474877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.060 4.060 5 C -0.171 4.171 6 C 0.396 3.604 7 O -0.453 6.453 8 C -0.161 4.161 9 C 0.057 3.943 10 N -0.531 5.531 11 C 0.037 3.963 12 C 0.189 3.811 13 H -0.008 1.008 14 C -0.136 4.136 15 C -0.596 4.596 16 H 0.065 0.935 17 C 0.036 3.964 18 N -0.901 5.901 19 Si 1.036 2.964 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.286 1.286 23 C -0.066 4.066 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.012 0.988 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.022 0.978 40 H 0.269 0.731 41 H 0.136 0.864 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.022 8.645 -2.200 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.078 4.078 5 C -0.172 4.172 6 C 0.273 3.727 7 O -0.328 6.328 8 C -0.199 4.199 9 C -0.071 4.071 10 N -0.256 5.256 11 C -0.112 4.112 12 C 0.082 3.918 13 H 0.010 0.990 14 C -0.194 4.194 15 C -0.633 4.633 16 H 0.083 0.917 17 C -0.170 4.170 18 N -0.535 5.535 19 Si 0.864 3.136 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.212 1.212 23 C -0.085 4.085 24 C -0.153 4.153 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.154 0.846 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.298 9.443 -1.986 24.297 hybrid contribution -1.321 -0.168 -0.500 1.422 sum -23.619 9.275 -2.487 25.497 Atomic orbital electron populations 1.20875 0.90946 1.03112 1.02640 1.20205 0.96327 0.93249 0.96277 1.21021 0.93963 0.97782 1.02666 1.21442 0.94009 0.97979 0.94387 1.20635 0.95341 0.94290 1.06922 1.22643 0.87961 0.91131 0.70941 1.90509 1.71123 1.35120 1.36048 1.22058 0.96986 0.95983 1.04857 1.21922 0.91116 0.92679 1.01408 1.62041 1.12387 1.17395 1.33729 1.22243 0.98773 1.00179 0.89985 1.19629 0.83071 0.96894 0.92206 0.99010 1.22114 1.00419 0.96965 0.99899 1.21919 0.93031 0.91819 1.56556 0.91717 1.25620 0.95638 1.02107 0.93639 1.70814 1.39323 1.06775 1.36565 0.84128 0.76056 0.76371 0.77021 1.21367 1.20179 1.21162 1.21538 0.94248 0.97642 0.95023 1.21042 0.94100 0.97778 1.02400 0.90765 0.91193 0.91289 0.85574 0.84944 0.88505 0.87616 0.90340 0.95422 0.90312 0.93707 0.96945 0.92999 0.93271 0.95946 0.92057 0.84646 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.00 36.01 0.36 -0.28 16 2 C -0.06 -0.49 5.89 -104.50 -0.62 -1.11 16 3 C -0.14 -1.21 9.68 -39.65 -0.38 -1.59 16 4 C -0.06 -0.66 9.60 -39.11 -0.38 -1.03 16 5 C -0.17 -2.02 5.87 -105.06 -0.62 -2.63 16 6 C 0.40 5.58 7.12 -30.69 -0.22 5.37 16 7 O -0.45 -7.74 15.98 5.58 0.09 -7.65 16 8 C -0.16 -2.27 4.24 -27.88 -0.12 -2.38 16 9 C 0.06 1.05 4.06 -3.82 -0.02 1.04 16 10 N -0.53 -11.29 4.62 -236.28 -1.09 -12.39 16 11 C 0.04 0.71 9.05 60.06 0.54 1.26 16 12 C 0.19 4.66 1.61 -68.87 -0.11 4.55 16 13 H -0.01 -0.19 6.50 -51.93 -0.34 -0.53 16 14 C -0.14 -3.15 8.17 37.16 0.30 -2.84 16 15 C -0.60 -16.68 8.01 -34.44 -0.28 -16.96 16 16 H 0.06 1.94 6.88 -52.48 -0.36 1.58 16 17 C 0.04 1.03 5.19 -17.82 -0.09 0.94 16 18 N -0.90 -27.60 13.70 55.43 0.76 -26.84 16 19 Si 1.04 25.57 26.39 -169.99 -4.49 21.09 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.44 6.02 56.52 0.34 -6.10 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.07 -0.65 9.47 -39.10 -0.37 -1.02 16 24 C -0.14 -1.14 9.68 -39.65 -0.38 -1.52 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.13 1.44 7.65 -52.48 -0.40 1.04 16 30 H 0.10 1.21 6.41 -51.93 -0.33 0.88 16 31 H 0.11 1.39 8.10 -51.93 -0.42 0.96 16 32 H 0.08 1.51 5.97 -51.93 -0.31 1.20 16 33 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.08 1.69 6.34 -51.93 -0.33 1.36 16 35 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.16 5.84 -51.93 -0.30 0.86 16 39 H 0.02 0.46 6.66 -51.93 -0.35 0.11 16 40 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 41 H 0.14 1.12 7.05 -52.49 -0.37 0.75 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -32.04 335.77 -8.47 -40.51 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.43 Total: -1.55 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.37 Total: -18.23 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.33 Total: -39.23 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -4.49 Total: 21.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.04 -8.47 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160167641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.556 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds