Wall clock time and date at job start Mon Mar 30 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38401 * 119.82119 * 2 1 4 4 C 1.37893 * 120.17011 * 179.97438 * 3 2 1 5 5 C 1.39849 * 119.82649 * 359.97438 * 4 3 2 6 6 C 1.47169 * 120.17266 * 179.97438 * 5 4 3 7 7 O 1.21249 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99659 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46808 * 180.02562 * 8 6 5 10 10 N 1.46908 * 109.47190 * 179.97438 * 9 8 6 11 11 C 1.46897 * 110.99792 * 66.04348 * 10 9 8 12 12 C 1.46891 * 110.99774 * 189.99971 * 10 9 8 13 13 H 1.09006 * 109.47638 * 299.99968 * 12 10 9 14 14 C 1.53003 * 109.47499 * 60.00101 * 12 10 9 15 15 C 1.50702 * 109.46941 * 179.97438 * 12 10 9 16 16 H 1.08007 * 119.99987 * 354.30080 * 15 12 10 17 17 C 1.37880 * 120.00047 * 174.29657 * 15 12 10 18 18 N 1.31516 * 119.99821 * 157.45421 * 17 15 12 19 19 Si 1.86800 * 120.00249 * 337.73257 * 17 15 12 20 20 H 1.48496 * 109.46923 * 269.72580 * 19 17 15 21 21 H 1.48498 * 109.46775 * 29.72214 * 19 17 15 22 22 H 1.48496 * 109.47036 * 149.71850 * 19 17 15 23 23 C 1.39861 * 119.65515 * 0.25068 * 5 4 3 24 24 C 1.37882 * 119.82198 * 359.47206 * 23 5 4 25 25 H 1.08994 * 109.47246 * 90.00717 * 1 2 3 26 26 H 1.09007 * 109.46850 * 209.99862 * 1 2 3 27 27 H 1.09000 * 109.47584 * 330.00017 * 1 2 3 28 28 H 1.08000 * 119.92012 * 359.97064 * 3 2 1 29 29 H 1.08007 * 120.08370 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47719 * 60.00547 * 8 6 5 31 31 H 1.09005 * 109.47232 * 300.00053 * 8 6 5 32 32 H 1.09003 * 109.47275 * 60.00168 * 9 8 6 33 33 H 1.08996 * 109.47144 * 300.00147 * 9 8 6 34 34 H 1.09000 * 109.47191 * 183.95412 * 11 10 9 35 35 H 1.08998 * 109.47566 * 303.95722 * 11 10 9 36 36 H 1.09005 * 109.46960 * 63.95580 * 11 10 9 37 37 H 1.09002 * 109.46507 * 51.60315 * 14 12 10 38 38 H 1.08996 * 109.47152 * 171.60311 * 14 12 10 39 39 H 1.08992 * 109.46953 * 291.60637 * 14 12 10 40 40 H 0.97004 * 120.00081 * 355.23535 * 18 17 15 41 41 H 1.07993 * 120.08520 * 179.72854 * 23 5 4 42 42 H 1.08000 * 119.91426 * 180.24837 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2007 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0002 0.0016 6 6 5.7488 0.0002 0.0016 7 8 6.3549 1.0503 0.0012 8 6 6.5022 -1.3048 0.0034 9 6 8.0065 -1.0252 0.0037 10 7 8.7411 -2.2974 0.0060 11 6 8.5227 -3.0336 -1.2463 12 6 10.1738 -2.0775 0.2444 13 1 10.5796 -1.4410 -0.5419 14 6 10.3665 -1.3973 1.6013 15 6 10.8927 -3.4020 0.2405 16 1 10.3305 -4.3214 0.1694 17 6 12.2682 -3.4400 0.3275 18 7 12.8698 -4.5254 0.7630 19 14 13.2770 -1.9472 -0.1658 20 1 13.6197 -2.0360 -1.6079 21 1 12.4881 -0.7134 0.0805 22 1 14.5249 -1.9055 0.6380 23 6 3.5742 -1.2090 -0.0032 24 6 2.1954 -1.2007 0.0021 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6510 2.1336 -0.0005 29 1 4.1099 2.1470 0.0001 30 1 6.2391 -1.8776 -0.8859 31 1 6.2389 -1.8752 0.8942 32 1 8.2695 -0.4526 0.8931 33 1 8.2702 -0.4546 -0.8868 34 1 9.0202 -4.0019 -1.1900 35 1 7.4537 -3.1827 -1.3984 36 1 8.9322 -2.4626 -2.0796 37 1 9.8321 -1.9582 2.3681 38 1 11.4283 -1.3686 1.8458 39 1 9.9763 -0.3806 1.5567 40 1 12.3449 -5.2737 1.0879 41 1 4.1100 -2.1466 -0.0068 42 1 1.6512 -2.1335 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160167641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:14 Heat of formation + Delta-G solvation = -34.717769 kcal Electronic energy + Delta-G solvation = -20631.253509 eV Core-core repulsion = 17575.274265 eV Total energy + Delta-G solvation = -3055.979244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17622 -39.56731 -38.73731 -35.11137 -34.00941 -32.84832 -31.94844 -31.05686 -28.74593 -27.23512 -26.05921 -24.31343 -23.58482 -22.58579 -21.04033 -20.53491 -19.56351 -18.11882 -17.19445 -16.75685 -16.29657 -16.14915 -15.84335 -15.52798 -15.30744 -14.98494 -14.66649 -14.64079 -14.43727 -14.36343 -13.95294 -13.72568 -13.18228 -13.00154 -12.84774 -12.77959 -12.72254 -12.54461 -12.49650 -12.16905 -12.12552 -11.92747 -11.68115 -11.58197 -10.96115 -10.74182 -10.40766 -9.96645 -9.68628 -9.05807 -8.73445 -6.29622 -0.34795 0.42042 1.39415 1.45462 1.48457 1.68572 2.47615 2.79473 2.81070 3.03336 3.43751 3.79479 3.92189 3.95920 4.03108 4.08650 4.25978 4.41429 4.42676 4.49818 4.54374 4.62975 4.73081 4.76653 4.79225 4.82355 4.86118 4.86497 4.89166 4.98564 5.08926 5.16315 5.19978 5.24197 5.34321 5.42954 5.49497 5.59045 5.84977 5.96046 6.08998 6.21781 6.46860 6.58759 6.75250 7.42698 8.64378 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041550 B = 0.003203 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.722928 B = 8740.128555 C = 9134.474877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.075 4.075 5 C -0.195 4.195 6 C 0.402 3.598 7 O -0.495 6.495 8 C -0.152 4.152 9 C 0.061 3.939 10 N -0.539 5.539 11 C 0.039 3.961 12 C 0.187 3.813 13 H -0.015 1.015 14 C -0.131 4.131 15 C -0.591 4.591 16 H 0.033 0.967 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 1.075 2.925 20 H -0.275 1.275 21 H -0.255 1.255 22 H -0.283 1.283 23 C -0.067 4.067 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.010 0.990 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.256 0.744 41 H 0.150 0.850 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.810 9.521 -2.620 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.093 4.093 5 C -0.196 4.196 6 C 0.282 3.718 7 O -0.373 6.373 8 C -0.189 4.189 9 C -0.068 4.068 10 N -0.263 5.263 11 C -0.109 4.109 12 C 0.079 3.921 13 H 0.003 0.997 14 C -0.189 4.189 15 C -0.629 4.629 16 H 0.051 0.949 17 C -0.212 4.212 18 N -0.568 5.568 19 Si 0.897 3.103 20 H -0.200 1.200 21 H -0.180 1.180 22 H -0.209 1.209 23 C -0.085 4.085 24 C -0.157 4.157 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.168 0.832 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.127 10.308 -2.412 27.266 hybrid contribution -0.639 -0.501 -0.379 0.896 sum -25.766 9.807 -2.791 27.710 Atomic orbital electron populations 1.20953 0.88705 1.04234 1.03629 1.20624 0.97999 0.92812 0.94180 1.21279 0.93165 0.99258 1.02192 1.21518 0.95112 0.97492 0.95219 1.20486 0.93838 0.95584 1.09679 1.22827 0.89159 0.90308 0.69479 1.90497 1.72053 1.36223 1.38522 1.21993 0.93781 0.96630 1.06529 1.21901 0.93551 0.90917 1.00382 1.61979 1.10511 1.19043 1.34816 1.22246 1.01216 0.98358 0.89127 1.19516 0.85047 0.94718 0.92804 0.99732 1.22008 1.00006 0.98147 0.98751 1.22048 0.93193 0.92386 1.55254 0.94870 1.26878 0.97321 1.03770 0.93198 1.70932 1.39346 1.07428 1.39056 0.83627 0.75137 0.74145 0.77387 1.20049 1.17958 1.20869 1.21744 0.95041 0.97320 0.94345 1.21402 0.93705 0.99064 1.01490 0.89661 0.89980 0.90367 0.83592 0.85969 0.86401 0.86207 0.91451 0.96401 0.93080 0.89479 0.97177 0.93292 0.94081 0.93631 0.93511 0.83191 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.00 71.24 0.71 -0.11 16 2 C -0.06 -0.74 5.89 -19.79 -0.12 -0.85 16 3 C -0.14 -2.21 9.68 22.23 0.22 -2.00 16 4 C -0.08 -1.59 9.60 22.58 0.22 -1.37 16 5 C -0.19 -4.35 5.87 -20.15 -0.12 -4.47 16 6 C 0.40 11.00 7.12 28.03 0.20 11.20 16 7 O -0.49 -17.03 15.98 -2.93 -0.05 -17.08 16 8 C -0.15 -3.99 4.24 29.85 0.13 -3.86 16 9 C 0.06 2.16 4.06 86.30 0.35 2.51 16 10 N -0.54 -22.50 4.62 -901.45 -4.17 -26.67 16 11 C 0.04 1.47 9.05 127.69 1.16 2.62 16 12 C 0.19 9.16 1.61 44.17 0.07 9.23 16 13 H -0.01 -0.74 6.50 -2.38 -0.02 -0.76 16 14 C -0.13 -5.96 8.17 71.98 0.59 -5.38 16 15 C -0.59 -33.70 8.01 25.60 0.20 -33.49 16 16 H 0.03 2.06 6.88 -2.91 -0.02 2.04 16 17 C -0.01 -0.71 5.19 84.66 0.44 -0.27 16 18 N -0.93 -58.49 13.70 21.45 0.29 -58.19 16 19 Si 1.07 51.42 26.39 68.60 1.81 53.23 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -11.26 6.02 99.48 0.60 -10.67 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 C -0.07 -1.12 9.47 22.58 0.21 -0.91 16 24 C -0.14 -1.87 9.68 22.23 0.22 -1.66 16 25 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 0.41 8.08 -2.38 -0.02 0.39 16 27 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 28 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.12 2.73 7.65 -2.91 -0.02 2.70 16 30 H 0.12 2.58 6.41 -2.39 -0.02 2.57 16 31 H 0.12 2.84 8.10 -2.38 -0.02 2.82 16 32 H 0.07 2.54 5.97 -2.39 -0.01 2.52 16 33 H 0.02 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.05 2.21 6.34 -2.39 -0.02 2.20 16 35 H 0.09 2.52 6.30 -2.39 -0.02 2.51 16 36 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.04 1.90 5.84 -2.39 -0.01 1.88 16 39 H 0.04 1.83 6.66 -2.39 -0.02 1.82 16 40 H 0.26 16.23 8.73 -92.71 -0.81 15.42 16 41 H 0.15 1.98 7.05 -2.91 -0.02 1.96 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -70.94 335.77 3.22 -67.72 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.85 Total: 9.78 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.47 Total: -28.80 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.87 Total: -84.86 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.05 Total: -17.08 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 1.81 Total: 53.23 kcal Total: -70.94 3.22 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160167641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.005 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds