Wall clock time and date at job start Mon Mar 30 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 N 1.46903 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.46901 * 111.00088 * 66.04107 * 10 9 8 12 12 C 1.46892 * 111.00384 * 190.00062 * 10 9 8 13 13 H 1.08998 * 109.47267 * 54.99824 * 12 10 9 14 14 C 1.52998 * 109.47207 * 294.99721 * 12 10 9 15 15 C 1.50701 * 109.47477 * 174.99506 * 12 10 9 16 16 H 1.08001 * 119.99808 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00133 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99941 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99792 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47428 * 60.00005 * 19 17 15 21 21 H 1.48499 * 109.46997 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47241 * 299.99958 * 19 17 15 23 23 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 5 4 25 25 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 26 26 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 27 27 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 28 28 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 30 30 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 31 31 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 32 32 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 33 33 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 34 34 H 1.09007 * 109.46665 * 60.00404 * 11 10 9 35 35 H 1.08996 * 109.46973 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.47169 * 300.00701 * 11 10 9 37 37 H 1.09002 * 109.46731 * 59.99920 * 14 12 10 38 38 H 1.09004 * 109.47408 * 179.97438 * 14 12 10 39 39 H 1.08998 * 109.47091 * 300.00211 * 14 12 10 40 40 H 0.96995 * 119.99866 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.09350 * 180.02562 * 23 5 4 42 42 H 1.07999 * 119.91308 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 7 8.7410 -2.2978 0.0116 11 6 8.5227 -3.0368 -1.2391 12 6 10.1736 -2.0776 0.2499 13 1 10.3059 -1.5125 1.1725 14 6 10.7702 -1.2919 -0.9195 15 6 10.8730 -3.4071 0.3706 16 1 10.3096 -4.3239 0.2791 17 6 12.2323 -3.4529 0.5969 18 7 12.9185 -2.3364 0.7079 19 14 13.0993 -5.1008 0.7458 20 1 12.9187 -5.8706 -0.5111 21 1 14.5475 -4.8782 0.9868 22 1 12.5207 -5.8637 1.8809 23 6 3.5742 -1.2091 0.0060 24 6 2.1953 -1.2008 0.0063 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1467 -0.0104 30 1 6.2385 -1.8730 0.8988 31 1 6.2392 -1.8806 -0.8811 32 1 8.2704 -0.4577 -0.8856 33 1 8.2691 -0.4504 0.8943 34 1 8.8689 -2.4368 -2.0807 35 1 9.0774 -3.9746 -1.2085 36 1 7.4597 -3.2474 -1.3559 37 1 10.2644 -0.3303 -1.0067 38 1 11.8333 -1.1281 -0.7425 39 1 10.6380 -1.8570 -1.8421 40 1 13.8748 -2.3687 0.8667 41 1 4.1099 -2.1469 0.0110 42 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160167788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:18 Heat of formation + Delta-G solvation = -14.947289 kcal Electronic energy + Delta-G solvation = -20582.515739 eV Core-core repulsion = 17527.393808 eV Total energy + Delta-G solvation = -3055.121932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15743 -38.54345 -37.08996 -33.32888 -32.95631 -31.48633 -30.70659 -28.41751 -27.64058 -25.62424 -25.08933 -23.14479 -22.83698 -21.51898 -19.58121 -19.00291 -17.06394 -16.13257 -15.87030 -15.47233 -15.37365 -15.01908 -14.51733 -14.16391 -14.04703 -13.74964 -13.66869 -13.43658 -13.32217 -12.65325 -12.52024 -12.16615 -11.93465 -11.85413 -11.60027 -11.31172 -11.18640 -11.03279 -10.74531 -10.70383 -10.59767 -10.23182 -9.98037 -9.83517 -9.50439 -9.22184 -8.92585 -8.83031 -8.35197 -7.12612 -5.97147 -4.01258 0.53054 1.15980 2.39301 3.34430 3.38831 3.41306 3.61020 3.99044 4.44615 4.51115 4.54641 4.74338 4.91831 5.09812 5.17287 5.22356 5.25844 5.34389 5.38484 5.41632 5.45039 5.65806 5.74892 5.80755 5.95166 6.09793 6.16842 6.25160 6.26670 6.30208 6.50167 6.54855 6.67256 6.71842 6.89356 6.94925 7.19053 7.52936 7.62945 7.76405 7.86222 8.16269 8.42218 8.63372 9.04235 9.63392 11.09988 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.003056 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.190947 B = 9160.888757 C = 9608.170721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.060 4.060 5 C -0.170 4.170 6 C 0.395 3.605 7 O -0.452 6.452 8 C -0.161 4.161 9 C 0.064 3.936 10 N -0.537 5.537 11 C 0.031 3.969 12 C 0.211 3.789 13 H 0.039 0.961 14 C -0.172 4.172 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.067 4.067 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.009 0.991 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.136 0.864 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.128 3.612 -2.486 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.079 4.079 5 C -0.171 4.171 6 C 0.272 3.728 7 O -0.327 6.327 8 C -0.199 4.199 9 C -0.064 4.064 10 N -0.260 5.260 11 C -0.117 4.117 12 C 0.105 3.895 13 H 0.057 0.943 14 C -0.232 4.232 15 C -0.539 4.539 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.085 4.085 24 C -0.153 4.153 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.154 0.846 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.778 3.939 -2.059 23.208 hybrid contribution 0.817 -0.391 -0.621 1.098 sum -21.961 3.548 -2.679 22.406 Atomic orbital electron populations 1.20870 0.90990 1.03049 1.02630 1.20197 0.96291 0.93265 0.96410 1.21013 0.93971 0.97758 1.02692 1.21446 0.93997 0.98018 0.94396 1.20660 0.95437 0.94260 1.06733 1.22671 0.87897 0.91231 0.70997 1.90518 1.71100 1.35136 1.35924 1.22063 0.97270 0.95844 1.04712 1.21787 0.90685 0.92736 1.01234 1.62349 1.13231 1.17224 1.33226 1.22280 0.98861 0.99695 0.90905 1.19296 0.80325 0.95965 0.93929 0.94295 1.22398 1.04774 0.96506 0.99487 1.21085 0.92277 0.92110 1.48432 0.91973 1.24941 0.97479 0.96477 0.95462 1.69885 1.07694 1.25989 1.49780 0.86579 0.78319 0.84042 0.78541 1.20408 1.21429 1.20249 1.21541 0.94219 0.97668 0.95040 1.21039 0.94109 0.97740 1.02456 0.90772 0.91329 0.91239 0.85613 0.84941 0.87705 0.88608 0.95021 0.91091 0.96562 0.90659 0.94019 0.97236 0.89391 0.95189 0.92964 0.84622 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.00 36.00 0.36 -0.30 16 2 C -0.06 -0.52 5.89 -104.50 -0.62 -1.13 16 3 C -0.14 -1.25 9.68 -39.65 -0.38 -1.64 16 4 C -0.06 -0.69 9.60 -39.11 -0.38 -1.06 16 5 C -0.17 -2.07 5.87 -105.06 -0.62 -2.69 16 6 C 0.39 5.79 7.12 -30.69 -0.22 5.57 16 7 O -0.45 -8.05 15.98 5.57 0.09 -7.96 16 8 C -0.16 -2.35 4.24 -27.88 -0.12 -2.46 16 9 C 0.06 1.23 3.69 -3.82 -0.01 1.22 16 10 N -0.54 -11.63 4.74 -236.29 -1.12 -12.75 16 11 C 0.03 0.60 8.56 60.07 0.51 1.12 16 12 C 0.21 5.43 2.34 -68.87 -0.16 5.27 16 13 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 14 C -0.17 -4.33 8.27 37.16 0.31 -4.02 16 15 C -0.50 -13.78 7.89 -34.44 -0.27 -14.05 16 16 H 0.06 1.69 6.77 -52.49 -0.36 1.34 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 18 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.07 -0.67 9.47 -39.10 -0.37 -1.04 16 24 C -0.14 -1.17 9.68 -39.64 -0.38 -1.55 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.08 -51.92 -0.42 -0.09 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.13 1.50 7.65 -52.49 -0.40 1.10 16 30 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 31 H 0.10 1.24 6.50 -51.93 -0.34 0.90 16 32 H 0.03 0.64 6.89 -51.93 -0.36 0.28 16 33 H 0.07 1.45 7.96 -51.93 -0.41 1.04 16 34 H 0.02 0.32 6.51 -51.92 -0.34 -0.02 16 35 H 0.07 1.57 6.41 -51.93 -0.33 1.23 16 36 H 0.04 0.66 6.47 -51.93 -0.34 0.33 16 37 H 0.01 0.21 6.75 -51.93 -0.35 -0.14 16 38 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.72 6.47 -51.93 -0.34 0.38 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.14 1.15 7.05 -52.49 -0.37 0.78 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -30.90 336.84 -9.11 -40.01 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.32 Total: -0.30 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.44 Total: -15.27 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.49 Total: -37.98 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.90 -9.11 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160167788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.066 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds