Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 N 1.46903 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.46901 * 111.00088 * 66.04107 * 10 9 8 12 12 C 1.46892 * 111.00384 * 190.00062 * 10 9 8 13 13 H 1.08998 * 109.47267 * 54.99824 * 12 10 9 14 14 C 1.52998 * 109.47207 * 294.99721 * 12 10 9 15 15 C 1.50701 * 109.47477 * 174.99506 * 12 10 9 16 16 H 1.08001 * 119.99808 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00133 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99941 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99792 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47428 * 60.00005 * 19 17 15 21 21 H 1.48499 * 109.46997 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47241 * 299.99958 * 19 17 15 23 23 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 5 4 25 25 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 26 26 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 27 27 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 28 28 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 30 30 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 31 31 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 32 32 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 33 33 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 34 34 H 1.09007 * 109.46665 * 60.00404 * 11 10 9 35 35 H 1.08996 * 109.46973 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.47169 * 300.00701 * 11 10 9 37 37 H 1.09002 * 109.46731 * 59.99920 * 14 12 10 38 38 H 1.09004 * 109.47408 * 179.97438 * 14 12 10 39 39 H 1.08998 * 109.47091 * 300.00211 * 14 12 10 40 40 H 0.96995 * 119.99866 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.09350 * 180.02562 * 23 5 4 42 42 H 1.07999 * 119.91308 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 7 8.7410 -2.2978 0.0116 11 6 8.5227 -3.0368 -1.2391 12 6 10.1736 -2.0776 0.2499 13 1 10.3059 -1.5125 1.1725 14 6 10.7702 -1.2919 -0.9195 15 6 10.8730 -3.4071 0.3706 16 1 10.3096 -4.3239 0.2791 17 6 12.2323 -3.4529 0.5969 18 7 12.9185 -2.3364 0.7079 19 14 13.0993 -5.1008 0.7458 20 1 12.9187 -5.8706 -0.5111 21 1 14.5475 -4.8782 0.9868 22 1 12.5207 -5.8637 1.8809 23 6 3.5742 -1.2091 0.0060 24 6 2.1953 -1.2008 0.0063 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1467 -0.0104 30 1 6.2385 -1.8730 0.8988 31 1 6.2392 -1.8806 -0.8811 32 1 8.2704 -0.4577 -0.8856 33 1 8.2691 -0.4504 0.8943 34 1 8.8689 -2.4368 -2.0807 35 1 9.0774 -3.9746 -1.2085 36 1 7.4597 -3.2474 -1.3559 37 1 10.2644 -0.3303 -1.0067 38 1 11.8333 -1.1281 -0.7425 39 1 10.6380 -1.8570 -1.8421 40 1 13.8748 -2.3687 0.8667 41 1 4.1099 -2.1469 0.0110 42 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160167788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = -32.886621 kcal Electronic energy + Delta-G solvation = -20583.293647 eV Core-core repulsion = 17527.393808 eV Total energy + Delta-G solvation = -3055.899839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15729 -39.55808 -38.77786 -35.03284 -33.98154 -32.67912 -31.81192 -30.09475 -28.61722 -27.35614 -26.90605 -24.46767 -23.56395 -22.69851 -20.97650 -20.46260 -18.24988 -18.07255 -17.15232 -16.70773 -16.50072 -16.19429 -15.92437 -15.35570 -15.26769 -14.98767 -14.71691 -14.53786 -14.40999 -14.30950 -13.76688 -13.29742 -13.07089 -12.98799 -12.81663 -12.73425 -12.60806 -12.54681 -12.52606 -12.43737 -12.02500 -11.92207 -11.88884 -11.58022 -10.94723 -10.68367 -10.49216 -9.94835 -9.66941 -8.90809 -8.09795 -6.21750 -0.32946 0.43827 1.41500 1.44318 1.46631 1.54052 2.43561 2.82576 2.87381 3.19306 3.56893 3.81796 3.95379 3.98193 4.05261 4.13078 4.29945 4.43529 4.52202 4.58193 4.65319 4.70903 4.79457 4.81320 4.83871 4.87653 4.88280 4.96338 5.01397 5.11013 5.16473 5.23772 5.26082 5.36242 5.45592 5.53265 5.60600 5.68973 5.76859 5.97976 6.17585 6.45676 6.51228 6.71184 6.91882 7.47530 8.96846 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.003056 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.190947 B = 9160.888757 C = 9608.170721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.195 4.195 6 C 0.399 3.601 7 O -0.499 6.499 8 C -0.150 4.150 9 C 0.069 3.931 10 N -0.540 5.540 11 C 0.033 3.967 12 C 0.213 3.787 13 H -0.001 1.001 14 C -0.158 4.158 15 C -0.514 4.514 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.271 1.271 23 C -0.065 4.065 24 C -0.138 4.138 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.016 0.984 33 H 0.046 0.954 34 H 0.011 0.989 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.153 0.847 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.069 1.575 -2.993 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.095 4.095 5 C -0.196 4.196 6 C 0.280 3.720 7 O -0.377 6.377 8 C -0.187 4.187 9 C -0.060 4.060 10 N -0.263 5.263 11 C -0.115 4.115 12 C 0.106 3.894 13 H 0.017 0.983 14 C -0.217 4.217 15 C -0.552 4.552 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.196 1.196 23 C -0.083 4.083 24 C -0.155 4.155 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.034 0.966 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.171 0.829 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.754 1.886 -2.573 25.951 hybrid contribution 1.602 0.285 -0.457 1.690 sum -24.152 2.171 -3.030 24.438 Atomic orbital electron populations 1.20951 0.88652 1.04257 1.03618 1.20629 0.98018 0.92794 0.94181 1.21265 0.93071 0.99315 1.02253 1.21508 0.95179 0.97465 0.95368 1.20486 0.93711 0.95687 1.09700 1.22924 0.89278 0.90401 0.69396 1.90507 1.72168 1.36413 1.38636 1.21989 0.93502 0.96516 1.06689 1.21727 0.93663 0.91256 0.99343 1.62270 1.10787 1.18438 1.34823 1.22330 1.01457 0.98372 0.89351 1.19067 0.83094 0.94958 0.92312 0.98262 1.22203 1.03001 0.96933 0.99568 1.21364 0.92764 0.92691 1.48384 0.91743 1.25793 0.98286 1.00037 0.95063 1.70037 1.07860 1.28151 1.50462 0.85510 0.76934 0.79665 0.78904 1.19345 1.21316 1.19570 1.21762 0.95052 0.97280 0.94211 1.21417 0.93650 0.99073 1.01387 0.89699 0.90414 0.89855 0.83663 0.86233 0.86004 0.86043 0.96532 0.93558 0.97079 0.92040 0.89668 0.96551 0.92015 0.94615 0.93023 0.82937 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.00 71.23 0.71 -0.15 16 2 C -0.06 -0.77 5.89 -19.79 -0.12 -0.88 16 3 C -0.14 -2.35 9.68 22.23 0.22 -2.13 16 4 C -0.08 -1.73 9.60 22.58 0.22 -1.52 16 5 C -0.19 -4.60 5.87 -20.15 -0.12 -4.72 16 6 C 0.40 11.78 7.12 28.03 0.20 11.98 16 7 O -0.50 -18.69 15.98 -2.97 -0.05 -18.73 16 8 C -0.15 -4.18 4.24 29.85 0.13 -4.05 16 9 C 0.07 2.67 3.69 86.30 0.32 2.99 16 10 N -0.54 -23.41 4.74 -901.48 -4.27 -27.68 16 11 C 0.03 1.23 8.56 127.69 1.09 2.32 16 12 C 0.21 11.30 2.34 44.17 0.10 11.40 16 13 H 0.00 -0.03 8.03 -2.39 -0.02 -0.05 16 14 C -0.16 -8.17 8.27 71.98 0.60 -7.58 16 15 C -0.51 -28.56 7.89 25.60 0.20 -28.36 16 16 H 0.06 3.48 6.77 -2.91 -0.02 3.47 16 17 C 0.01 0.35 5.30 84.65 0.45 0.80 16 18 N -0.93 -54.79 11.32 21.45 0.24 -54.55 16 19 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C -0.07 -1.13 9.47 22.58 0.21 -0.92 16 24 C -0.14 -1.89 9.68 22.23 0.22 -1.68 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 27 H 0.08 0.42 8.08 -2.38 -0.02 0.40 16 28 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.12 2.89 7.65 -2.91 -0.02 2.87 16 30 H 0.12 3.03 8.09 -2.39 -0.02 3.01 16 31 H 0.12 2.77 6.50 -2.39 -0.02 2.75 16 32 H 0.02 0.69 6.89 -2.39 -0.02 0.67 16 33 H 0.05 2.00 7.96 -2.39 -0.02 1.98 16 34 H 0.01 0.41 6.51 -2.38 -0.02 0.40 16 35 H 0.06 2.47 6.41 -2.39 -0.02 2.45 16 36 H 0.08 2.42 6.47 -2.39 -0.02 2.41 16 37 H 0.02 0.77 6.75 -2.39 -0.02 0.76 16 38 H 0.06 3.52 6.07 -2.38 -0.01 3.51 16 39 H 0.03 1.75 6.47 -2.39 -0.02 1.74 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.15 2.04 7.05 -2.91 -0.02 2.02 16 42 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -69.24 336.84 3.37 -65.86 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.00 Total: 11.58 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.42 Total: -22.50 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -4.03 Total: -82.23 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.24 3.37 -65.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160167788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.976 kcal (2) G-P(sol) polarization free energy of solvation -69.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds