Wall clock time and date at job start Mon Mar 30 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48510 * 109.46681 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47300 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00197 * 3 2 1 7 7 C 1.38809 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99763 * 159.41872 * 7 2 1 9 9 N 1.36941 * 120.00564 * 339.42724 * 7 2 1 10 10 C 1.46503 * 119.99402 * 321.49829 * 9 7 2 11 11 C 1.50694 * 109.47083 * 270.00025 * 10 9 7 12 12 C 1.38237 * 120.00296 * 89.99738 * 11 10 9 13 13 C 1.38232 * 120.00004 * 180.02562 * 12 11 10 14 14 C 1.38236 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.50710 * 119.99942 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46837 * 89.99886 * 15 14 13 17 17 C 1.38235 * 120.00278 * 0.25307 * 14 13 12 18 18 C 1.38227 * 119.99749 * 359.49256 * 17 14 13 19 19 C 1.46494 * 120.00249 * 141.49450 * 9 7 2 20 20 C 1.54267 * 110.03189 * 62.56008 * 19 9 7 21 21 C 1.54965 * 104.16124 * 217.13357 * 20 19 9 22 22 C 1.54883 * 102.77492 * 37.88773 * 21 20 19 23 23 C 1.53870 * 110.03751 * 305.34290 * 19 9 7 24 24 H 0.96996 * 119.99824 * 355.04394 * 1 2 3 25 25 H 1.09004 * 109.46981 * 150.00025 * 10 9 7 26 26 H 1.09000 * 109.47326 * 29.99749 * 10 9 7 27 27 H 1.07994 * 119.99811 * 0.02562 * 12 11 10 28 28 H 1.07999 * 119.99916 * 179.97438 * 13 12 11 29 29 H 1.09003 * 109.46735 * 330.00965 * 15 14 13 30 30 H 1.08991 * 109.47185 * 210.00214 * 15 14 13 31 31 H 0.96703 * 113.99858 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.99828 * 179.72685 * 17 14 13 33 33 H 1.07997 * 120.00171 * 180.23332 * 18 17 14 34 34 H 1.09000 * 110.01541 * 183.94526 * 19 9 7 35 35 H 1.08998 * 110.48689 * 335.78133 * 20 19 9 36 36 H 1.09009 * 110.48561 * 98.42107 * 20 19 9 37 37 H 1.08994 * 110.71862 * 279.57395 * 21 20 19 38 38 H 1.08999 * 110.91918 * 156.29626 * 21 20 19 39 39 H 1.09001 * 110.48687 * 203.40196 * 22 21 20 40 40 H 1.08997 * 110.60060 * 80.81883 * 22 21 20 41 41 H 1.08997 * 110.03566 * 238.56946 * 23 19 9 42 42 H 1.09003 * 110.02961 * 359.95053 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0386 -1.2321 -0.3283 9 7 1.3911 -2.3501 0.4178 10 6 0.4678 -2.3127 1.5546 11 6 1.2312 -2.5603 2.8301 12 6 1.7709 -1.4975 3.5302 13 6 2.4716 -1.7249 4.6998 14 6 2.6331 -3.0150 5.1692 15 6 3.3976 -3.2629 6.4441 16 8 2.4977 -3.2271 7.5536 17 6 2.0984 -4.0784 4.4661 18 6 1.3932 -3.8506 3.2992 19 6 1.6520 -3.6156 -0.2727 20 6 3.1412 -3.9945 -0.1367 21 6 3.4979 -4.6273 -1.5056 22 6 2.7011 -3.7528 -2.5052 23 6 1.3720 -3.4623 -1.7779 24 1 -0.4850 0.8369 0.0726 25 1 -0.2926 -3.0838 1.4307 26 1 -0.0109 -1.3345 1.6019 27 1 1.6451 -0.4897 3.1633 28 1 2.8936 -0.8945 5.2466 29 1 4.1576 -2.4914 6.5678 30 1 3.8766 -4.2407 6.3962 31 1 2.9220 -3.3788 8.4093 32 1 2.2284 -5.0867 4.8305 33 1 0.9722 -4.6810 2.7519 34 1 1.0264 -4.4043 0.1451 35 1 3.7463 -3.1057 0.0417 36 1 3.2788 -4.7184 0.6666 37 1 3.1654 -5.6644 -1.5493 38 1 4.5682 -4.5579 -1.6994 39 1 2.5183 -4.3004 -3.4297 40 1 3.2337 -2.8245 -2.7118 41 1 0.6111 -4.1772 -2.0910 42 1 1.0412 -2.4465 -1.9946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163436983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:29 Heat of formation + Delta-G solvation = -18.489665 kcal Electronic energy + Delta-G solvation = -21794.731850 eV Core-core repulsion = 18739.456310 eV Total energy + Delta-G solvation = -3055.275541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.96802 -37.65318 -36.47910 -34.36289 -31.80371 -30.59399 -30.27727 -27.80517 -27.35959 -26.25138 -24.28577 -22.12054 -21.99677 -20.10888 -19.88399 -19.00387 -17.38731 -16.46182 -15.61736 -15.39844 -15.10670 -14.72768 -14.51958 -14.19936 -13.51555 -13.37910 -13.14296 -12.91367 -12.77774 -12.52193 -12.25792 -11.61437 -11.24095 -11.13590 -10.99110 -10.81744 -10.53970 -10.41025 -10.35969 -10.33097 -10.19076 -10.10522 -10.00275 -9.82716 -9.67646 -9.49587 -8.47217 -8.27321 -7.95117 -6.58613 -5.77710 -3.39613 1.91315 2.06660 3.33673 3.42690 3.45997 4.20815 4.48414 4.73034 5.15219 5.21095 5.27091 5.40818 5.45779 5.49292 5.51238 5.59075 5.60403 5.80348 5.93023 6.16236 6.19269 6.25333 6.26814 6.31732 6.45107 6.50287 6.57188 6.60993 6.65440 6.68938 6.79830 6.88915 7.04973 7.08438 7.13214 7.19721 7.39014 7.43069 7.61192 7.65150 7.74289 7.83308 8.52334 9.17641 9.79900 10.38752 11.18393 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.006619 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.329207 B = 4229.406102 C = 5453.345905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.013 3.987 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.059 0.941 9 N -0.568 5.568 10 C 0.172 3.828 11 C -0.059 4.059 12 C -0.102 4.102 13 C -0.104 4.104 14 C -0.122 4.122 15 C 0.124 3.876 16 O -0.568 6.568 17 C -0.106 4.106 18 C -0.125 4.125 19 C 0.173 3.827 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.130 4.130 24 H 0.254 0.746 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.372 0.628 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -7.624 6.763 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.077 0.923 9 N -0.286 5.286 10 C 0.046 3.954 11 C -0.062 4.062 12 C -0.121 4.121 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.046 3.954 16 O -0.374 6.374 17 C -0.124 4.124 18 C -0.144 4.144 19 C 0.066 3.934 20 C -0.173 4.173 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.605 -7.353 6.168 10.645 hybrid contribution 1.031 0.774 0.500 1.382 sum 5.636 -6.579 6.668 10.932 Atomic orbital electron populations 1.70059 1.05420 1.26065 1.50942 1.25116 0.94861 0.98480 1.00252 0.86590 0.79769 0.84285 0.77931 1.21259 1.21484 1.20325 1.18863 0.93558 0.85481 1.39217 0.92309 1.43851 1.52086 1.03584 1.29032 1.20059 0.90238 1.03104 0.81988 1.21303 0.96455 0.92090 0.96352 1.21076 0.97392 0.99660 0.93995 1.20939 0.99161 0.95471 0.96691 1.19324 1.03095 0.93941 0.95915 1.20943 0.90497 0.99373 0.84541 1.86626 1.38204 1.95574 1.16951 1.20822 0.98270 0.97560 0.95765 1.20985 1.00283 0.96879 0.96252 1.21044 0.92882 0.88255 0.91232 1.22838 0.99770 0.99756 0.94951 1.22440 0.98669 0.98319 0.96669 1.22248 0.97408 0.98957 0.96893 1.22531 0.95340 1.02608 0.96477 0.93609 0.94806 0.88056 0.86149 0.87201 0.93353 0.93420 0.78162 0.87343 0.87046 0.93550 0.90964 0.93567 0.92752 0.93013 0.93472 0.92026 0.94113 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 11.48 55.49 0.64 -23.50 16 2 C 0.01 0.34 4.97 -17.43 -0.09 0.26 16 3 Si 0.89 20.89 29.60 -169.99 -5.03 15.86 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.15 7.75 -15.06 -0.12 -6.27 16 8 H 0.06 1.54 6.94 -52.48 -0.36 1.18 16 9 N -0.57 -13.20 2.36 -165.76 -0.39 -13.59 16 10 C 0.17 3.90 5.40 -5.20 -0.03 3.87 16 11 C -0.06 -1.21 5.46 -104.62 -0.57 -1.78 16 12 C -0.10 -2.08 9.70 -39.58 -0.38 -2.46 16 13 C -0.10 -1.87 9.70 -39.58 -0.38 -2.26 16 14 C -0.12 -2.04 5.51 -104.62 -0.58 -2.62 16 15 C 0.12 1.61 7.17 36.01 0.26 1.86 16 16 O -0.57 -7.40 13.64 -35.23 -0.48 -7.88 16 17 C -0.11 -1.78 9.70 -39.59 -0.38 -2.16 16 18 C -0.13 -2.29 9.70 -39.58 -0.38 -2.67 16 19 C 0.17 3.53 3.42 -66.82 -0.23 3.30 16 20 C -0.13 -2.49 6.43 -25.03 -0.16 -2.65 16 21 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 22 C -0.12 -2.02 6.83 -25.08 -0.17 -2.19 16 23 C -0.13 -2.58 6.24 -25.62 -0.16 -2.74 16 24 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 25 H 0.03 0.73 7.85 -51.93 -0.41 0.33 16 26 H 0.10 2.58 5.50 -51.93 -0.29 2.30 16 27 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.37 2.75 9.12 45.56 0.42 3.16 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 35 H 0.07 1.51 6.64 -51.93 -0.34 1.17 16 36 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 2.04 7.17 -51.93 -0.37 1.67 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -28.52 339.91 -9.66 -38.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.97 Total: 6.48 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.55 Total: -20.66 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.25 Total: -37.09 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.48 Total: -7.88 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.52 -9.66 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163436983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.692 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds