Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48510 * 109.46681 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47300 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00197 * 3 2 1 7 7 C 1.38809 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99763 * 159.41872 * 7 2 1 9 9 N 1.36941 * 120.00564 * 339.42724 * 7 2 1 10 10 C 1.46503 * 119.99402 * 321.49829 * 9 7 2 11 11 C 1.50694 * 109.47083 * 270.00025 * 10 9 7 12 12 C 1.38237 * 120.00296 * 89.99738 * 11 10 9 13 13 C 1.38232 * 120.00004 * 180.02562 * 12 11 10 14 14 C 1.38236 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.50710 * 119.99942 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46837 * 89.99886 * 15 14 13 17 17 C 1.38235 * 120.00278 * 0.25307 * 14 13 12 18 18 C 1.38227 * 119.99749 * 359.49256 * 17 14 13 19 19 C 1.46494 * 120.00249 * 141.49450 * 9 7 2 20 20 C 1.54267 * 110.03189 * 62.56008 * 19 9 7 21 21 C 1.54965 * 104.16124 * 217.13357 * 20 19 9 22 22 C 1.54883 * 102.77492 * 37.88773 * 21 20 19 23 23 C 1.53870 * 110.03751 * 305.34290 * 19 9 7 24 24 H 0.96996 * 119.99824 * 355.04394 * 1 2 3 25 25 H 1.09004 * 109.46981 * 150.00025 * 10 9 7 26 26 H 1.09000 * 109.47326 * 29.99749 * 10 9 7 27 27 H 1.07994 * 119.99811 * 0.02562 * 12 11 10 28 28 H 1.07999 * 119.99916 * 179.97438 * 13 12 11 29 29 H 1.09003 * 109.46735 * 330.00965 * 15 14 13 30 30 H 1.08991 * 109.47185 * 210.00214 * 15 14 13 31 31 H 0.96703 * 113.99858 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.99828 * 179.72685 * 17 14 13 33 33 H 1.07997 * 120.00171 * 180.23332 * 18 17 14 34 34 H 1.09000 * 110.01541 * 183.94526 * 19 9 7 35 35 H 1.08998 * 110.48689 * 335.78133 * 20 19 9 36 36 H 1.09009 * 110.48561 * 98.42107 * 20 19 9 37 37 H 1.08994 * 110.71862 * 279.57395 * 21 20 19 38 38 H 1.08999 * 110.91918 * 156.29626 * 21 20 19 39 39 H 1.09001 * 110.48687 * 203.40196 * 22 21 20 40 40 H 1.08997 * 110.60060 * 80.81883 * 22 21 20 41 41 H 1.08997 * 110.03566 * 238.56946 * 23 19 9 42 42 H 1.09003 * 110.02961 * 359.95053 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0386 -1.2321 -0.3283 9 7 1.3911 -2.3501 0.4178 10 6 0.4678 -2.3127 1.5546 11 6 1.2312 -2.5603 2.8301 12 6 1.7709 -1.4975 3.5302 13 6 2.4716 -1.7249 4.6998 14 6 2.6331 -3.0150 5.1692 15 6 3.3976 -3.2629 6.4441 16 8 2.4977 -3.2271 7.5536 17 6 2.0984 -4.0784 4.4661 18 6 1.3932 -3.8506 3.2992 19 6 1.6520 -3.6156 -0.2727 20 6 3.1412 -3.9945 -0.1367 21 6 3.4979 -4.6273 -1.5056 22 6 2.7011 -3.7528 -2.5052 23 6 1.3720 -3.4623 -1.7779 24 1 -0.4850 0.8369 0.0726 25 1 -0.2926 -3.0838 1.4307 26 1 -0.0109 -1.3345 1.6019 27 1 1.6451 -0.4897 3.1633 28 1 2.8936 -0.8945 5.2466 29 1 4.1576 -2.4914 6.5678 30 1 3.8766 -4.2407 6.3962 31 1 2.9220 -3.3788 8.4093 32 1 2.2284 -5.0867 4.8305 33 1 0.9722 -4.6810 2.7519 34 1 1.0264 -4.4043 0.1451 35 1 3.7463 -3.1057 0.0417 36 1 3.2788 -4.7184 0.6666 37 1 3.1654 -5.6644 -1.5493 38 1 4.5682 -4.5579 -1.6994 39 1 2.5183 -4.3004 -3.4297 40 1 3.2337 -2.8245 -2.7118 41 1 0.6111 -4.1772 -2.0910 42 1 1.0412 -2.4465 -1.9946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163436983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -34.319086 kcal Electronic energy + Delta-G solvation = -21795.418266 eV Core-core repulsion = 18739.456310 eV Total energy + Delta-G solvation = -3055.961956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39163 -39.18520 -37.54666 -36.02342 -33.51047 -32.20485 -31.70927 -29.30739 -28.79093 -27.98516 -25.79713 -23.71611 -23.47357 -21.57007 -21.29225 -20.70132 -18.31235 -18.27994 -17.15106 -16.88587 -16.52685 -16.35804 -15.99408 -15.84471 -15.04442 -14.76545 -14.55496 -14.37357 -14.16960 -14.03250 -13.69084 -13.26629 -12.95371 -12.82504 -12.67126 -12.48783 -12.15760 -12.05076 -11.89278 -11.76353 -11.73135 -11.65462 -11.52950 -11.23395 -11.14166 -10.92396 -10.45482 -9.70073 -9.41676 -8.51318 -7.74852 -5.40714 0.50637 0.62957 1.40735 1.45247 1.52688 2.51480 2.87432 3.28913 3.66974 3.78353 3.98109 4.00722 4.04701 4.13959 4.25786 4.33342 4.38322 4.40656 4.58911 4.68833 4.73028 4.77232 4.79351 4.92970 4.95167 4.96692 5.00766 5.21548 5.24254 5.26461 5.29444 5.34695 5.58354 5.59415 5.63270 5.67285 5.68778 5.72976 5.84159 6.03988 6.24537 6.53981 6.97369 7.21861 7.91650 8.44627 9.16577 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.006619 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.329207 B = 4229.406102 C = 5453.345905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.030 4.030 3 Si 0.934 3.066 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.231 4.231 8 H 0.048 0.952 9 N -0.578 5.578 10 C 0.178 3.822 11 C -0.078 4.078 12 C -0.125 4.125 13 C -0.110 4.110 14 C -0.121 4.121 15 C 0.126 3.874 16 O -0.589 6.589 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.164 3.836 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.128 4.128 24 H 0.248 0.752 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.398 0.602 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -10.164 8.054 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.763 3.237 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.362 4.362 8 H 0.066 0.934 9 N -0.297 5.297 10 C 0.052 3.948 11 C -0.081 4.081 12 C -0.145 4.145 13 C -0.128 4.128 14 C -0.122 4.122 15 C 0.049 3.951 16 O -0.399 6.399 17 C -0.120 4.120 18 C -0.145 4.145 19 C 0.058 3.942 20 C -0.165 4.165 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.248 0.752 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.491 -9.911 7.484 14.013 hybrid contribution 0.448 1.481 0.197 1.560 sum 6.939 -8.430 7.680 13.349 Atomic orbital electron populations 1.70165 1.06435 1.26010 1.53060 1.25609 0.95352 1.00656 1.01109 0.85812 0.78726 0.81613 0.77556 1.21306 1.21875 1.20096 1.18865 0.92959 0.86510 1.37835 0.93432 1.43981 1.51810 1.04008 1.29906 1.19822 0.90446 1.01180 0.83345 1.21036 0.97544 0.93491 0.96022 1.20993 0.99288 0.98515 0.95658 1.21141 0.98728 0.97149 0.95803 1.19845 1.01905 0.93068 0.97355 1.20945 0.89916 1.01411 0.82837 1.86543 1.39159 1.95780 1.18382 1.21198 0.96868 0.99274 0.94690 1.21115 1.00437 0.95956 0.97042 1.21270 0.94443 0.87195 0.91295 1.22697 0.97573 0.99030 0.97236 1.22402 0.99535 0.98976 0.93952 1.22210 0.95721 0.98959 0.98189 1.22449 0.97335 1.00259 0.96702 0.94255 0.94736 0.91469 0.88805 0.85554 0.91785 0.90821 0.75207 0.84036 0.85745 0.92652 0.93870 0.92292 0.90226 0.91347 0.90794 0.93744 0.92596 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 11.48 21.65 0.25 -52.40 16 2 C -0.03 -1.65 4.97 84.86 0.42 -1.23 16 3 Si 0.93 44.74 29.60 68.60 2.03 46.77 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.23 -12.27 7.75 84.03 0.65 -11.62 16 8 H 0.05 2.61 6.94 -2.91 -0.02 2.59 16 9 N -0.58 -27.81 2.36 -678.33 -1.60 -29.41 16 10 C 0.18 8.42 5.40 85.63 0.46 8.88 16 11 C -0.08 -3.27 5.46 -19.86 -0.11 -3.38 16 12 C -0.13 -5.26 9.70 22.27 0.22 -5.04 16 13 C -0.11 -3.86 9.70 22.27 0.22 -3.65 16 14 C -0.12 -3.72 5.51 -19.86 -0.11 -3.83 16 15 C 0.13 2.75 7.17 71.24 0.51 3.26 16 16 O -0.59 -13.12 13.64 -148.98 -2.03 -15.16 16 17 C -0.10 -3.12 9.70 22.27 0.22 -2.90 16 18 C -0.13 -4.46 9.70 22.27 0.22 -4.25 16 19 C 0.16 6.68 3.42 45.72 0.16 6.83 16 20 C -0.13 -4.52 6.43 31.70 0.20 -4.32 16 21 C -0.11 -3.23 6.91 31.91 0.22 -3.01 16 22 C -0.11 -3.72 6.83 31.67 0.22 -3.50 16 23 C -0.13 -5.08 6.24 31.32 0.20 -4.88 16 24 H 0.25 14.01 8.32 -92.71 -0.77 13.24 16 25 H 0.03 1.56 7.85 -2.39 -0.02 1.54 16 26 H 0.07 3.67 5.50 -2.39 -0.01 3.65 16 27 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.40 4.28 9.12 -74.06 -0.68 3.61 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.06 2.12 7.81 -2.39 -0.02 2.11 16 35 H 0.04 1.80 6.64 -2.39 -0.02 1.78 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.04 2.00 7.17 -2.39 -0.02 1.99 16 Total: -1.00 -64.34 339.91 2.65 -61.68 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.32 Total: 21.15 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.69 Total: -32.63 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.35 Total: -81.81 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -2.03 Total: -15.16 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.34 2.65 -61.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163436983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.365 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds