Wall clock time and date at job start Mon Mar 30 2020 01:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 120.00509 * 2 1 4 4 C 1.38233 * 120.00035 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00237 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46963 * 305.45007 * 6 5 4 8 8 C 1.52992 * 109.47000 * 185.44292 * 6 5 4 9 9 C 1.50709 * 109.46862 * 65.44630 * 6 5 4 10 10 O 1.21281 * 119.99906 * 5.56667 * 9 6 5 11 11 N 1.34771 * 119.99571 * 185.56505 * 9 6 5 12 12 C 1.46503 * 119.99501 * 180.02562 * 11 9 6 13 13 H 1.08991 * 109.47390 * 324.99908 * 12 11 9 14 14 C 1.52999 * 109.47031 * 85.00235 * 12 11 9 15 15 C 1.50703 * 109.47098 * 204.99552 * 12 11 9 16 16 H 1.08003 * 119.99629 * 354.31519 * 15 12 11 17 17 C 1.37875 * 120.00126 * 174.30693 * 15 12 11 18 18 N 1.31516 * 119.99915 * 156.53685 * 17 15 12 19 19 Si 1.86804 * 119.99983 * 336.81226 * 17 15 12 20 20 H 1.48503 * 109.46861 * 179.72251 * 19 17 15 21 21 H 1.48500 * 109.46903 * 299.72233 * 19 17 15 22 22 H 1.48494 * 109.46982 * 59.72401 * 19 17 15 23 23 C 1.38233 * 119.99737 * 0.25192 * 5 4 3 24 24 C 1.38229 * 120.00236 * 359.47046 * 23 5 4 25 25 H 1.09004 * 109.47143 * 89.99686 * 1 2 3 26 26 H 1.08993 * 109.47487 * 209.99917 * 1 2 3 27 27 H 1.09005 * 109.47008 * 330.00437 * 1 2 3 28 28 H 1.07998 * 119.99765 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.99760 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46638 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46653 * 299.99678 * 7 6 5 32 32 H 1.08994 * 109.47321 * 60.00256 * 7 6 5 33 33 H 1.08998 * 109.47808 * 300.00479 * 8 6 5 34 34 H 1.09007 * 109.46934 * 60.00693 * 8 6 5 35 35 H 1.09008 * 109.47113 * 179.97438 * 8 6 5 36 36 H 0.97001 * 120.00474 * 0.02562 * 11 9 6 37 37 H 1.09001 * 109.47379 * 293.32016 * 14 12 11 38 38 H 1.09003 * 109.47690 * 53.32542 * 14 12 11 39 39 H 1.09003 * 109.47186 * 173.32075 * 14 12 11 40 40 H 0.96999 * 119.99619 * 355.21397 * 18 17 15 41 41 H 1.08007 * 119.99912 * 179.72826 * 23 5 4 42 42 H 1.08007 * 120.00353 * 180.27426 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 5.7787 -0.0003 0.0005 7 6 6.2887 0.8363 -1.1746 8 6 6.2886 -1.4362 -0.1363 9 6 6.2811 0.5902 1.2930 10 8 5.4976 0.8799 2.1722 11 7 7.6009 0.7961 1.4716 12 6 8.0893 1.3695 2.7281 13 1 7.3666 2.0950 3.1015 14 6 8.2728 0.2549 3.7600 15 6 9.4102 2.0541 2.4881 16 1 9.8873 1.9834 1.5217 17 6 10.0096 2.7708 3.5020 18 7 11.3089 2.9733 3.4849 19 14 8.9771 3.4478 4.9039 20 1 9.8541 4.1689 5.8611 21 1 7.9600 4.3843 4.3621 22 1 8.2967 2.3282 5.6029 23 6 3.5804 -1.1972 -0.0053 24 6 2.1982 -1.1972 0.0000 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 0.0001 30 1 7.3787 0.8359 -1.1748 31 1 5.9254 0.4093 -2.1093 32 1 5.9255 1.8593 -1.0770 33 1 5.9252 -2.0322 0.7008 34 1 5.9253 -1.8632 -1.0711 35 1 7.3787 -1.4363 -0.1367 36 1 8.2275 0.5647 0.7682 37 1 7.3001 -0.1614 4.0221 38 1 8.9024 -0.5294 3.3398 39 1 8.7466 0.6614 4.6536 40 1 11.8551 2.5606 2.7976 41 1 4.1204 -2.1326 -0.0097 42 1 1.6581 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171293857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:00 Heat of formation + Delta-G solvation = -32.810238 kcal Electronic energy + Delta-G solvation = -21556.494814 eV Core-core repulsion = 18500.598286 eV Total energy + Delta-G solvation = -3055.896527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31644 -38.55168 -35.51699 -34.80462 -32.52374 -31.57733 -30.97710 -29.34011 -27.38921 -26.57134 -24.87068 -23.50039 -22.23852 -21.49124 -20.00599 -19.10889 -17.68845 -16.58069 -16.10591 -15.36479 -15.18771 -14.62189 -14.26922 -13.86197 -13.71996 -13.69209 -13.39049 -13.23289 -12.79127 -12.59021 -12.26949 -12.21284 -12.11441 -12.04984 -11.78334 -11.68463 -11.50500 -11.40549 -11.27835 -10.74521 -10.58187 -10.48152 -10.09777 -9.83355 -9.14995 -9.05060 -8.76146 -8.36699 -8.29067 -8.12407 -6.59549 -4.20307 1.43893 1.55562 3.28740 3.41195 3.46077 3.61607 3.74656 4.17543 4.44426 4.58967 4.80941 4.92966 5.00375 5.06961 5.11732 5.12794 5.33663 5.39091 5.49061 5.53244 5.58107 5.72497 5.75529 5.75831 5.84892 5.87503 6.07936 6.17137 6.19782 6.21457 6.41362 6.54935 6.58031 6.67553 6.70054 6.77780 6.98933 7.13027 7.31813 7.43713 7.69502 8.24678 8.52201 8.71716 9.02254 9.45542 10.78681 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.004508 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961982 B = 6210.212170 C = 6644.406707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.087 4.087 5 C -0.052 4.052 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.140 4.140 9 C 0.512 3.488 10 O -0.547 6.547 11 N -0.700 5.700 12 C 0.244 3.756 13 H 0.039 0.961 14 C -0.155 4.155 15 C -0.624 4.624 16 H 0.062 0.938 17 C 0.046 3.954 18 N -0.891 5.891 19 Si 1.033 2.967 20 H -0.283 1.283 21 H -0.281 1.281 22 H -0.274 1.274 23 C -0.113 4.113 24 C -0.124 4.124 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.391 0.609 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.270 0.730 41 H 0.124 0.876 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 -8.194 -10.244 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.105 4.105 5 C -0.053 4.053 6 C -0.051 4.051 7 C -0.195 4.195 8 C -0.197 4.197 9 C 0.296 3.704 10 O -0.425 6.425 11 N -0.348 5.348 12 C 0.140 3.860 13 H 0.057 0.943 14 C -0.214 4.214 15 C -0.661 4.661 16 H 0.080 0.920 17 C -0.162 4.162 18 N -0.523 5.523 19 Si 0.860 3.140 20 H -0.208 1.208 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.131 4.131 24 C -0.142 4.142 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.111 -7.041 -8.211 19.405 hybrid contribution 0.370 -1.025 -1.687 2.009 sum -15.741 -8.066 -9.898 20.268 Atomic orbital electron populations 1.20753 0.91585 1.02548 1.01901 1.19857 0.95761 0.93333 1.00573 1.20944 0.94048 0.97356 1.01549 1.20920 0.93952 0.97738 0.97887 1.19312 0.93197 0.93437 0.99346 1.19778 0.92602 0.97528 0.95158 1.21879 1.01517 0.99777 0.96303 1.21907 1.01589 0.93883 1.02365 1.20221 0.83240 0.78868 0.88053 1.90660 1.55572 1.52091 1.44215 1.46268 1.06007 1.62696 1.19840 1.18964 0.95221 0.91330 0.80452 0.94299 1.22415 0.98785 0.99922 1.00242 1.22009 1.05216 1.37941 1.00957 0.91988 1.25616 0.96411 0.94232 0.99896 1.70873 1.04489 1.43294 1.33614 0.84190 0.75691 0.77543 0.76577 1.20849 1.20695 1.20000 1.21084 0.94056 0.97657 1.00332 1.20914 0.94038 0.97244 1.02050 0.91524 0.91804 0.91739 0.86382 0.86361 0.91511 0.91669 0.91843 0.91796 0.91424 0.91600 0.77520 0.95281 0.93851 0.92353 0.91968 0.85817 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 2 C -0.10 -1.16 5.88 -104.62 -0.62 -1.78 16 3 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 4 C -0.09 -1.31 8.36 -39.58 -0.33 -1.64 16 5 C -0.05 -0.78 4.24 -104.62 -0.44 -1.23 16 6 C -0.05 -0.69 0.72 -156.81 -0.11 -0.81 16 7 C -0.14 -1.74 8.07 37.16 0.30 -1.44 16 8 C -0.14 -1.69 7.10 37.15 0.26 -1.43 16 9 C 0.51 9.98 6.31 -10.98 -0.07 9.91 16 10 O -0.55 -12.77 15.19 5.56 0.08 -12.68 16 11 N -0.70 -14.29 4.90 -54.93 -0.27 -14.56 16 12 C 0.24 5.94 2.16 -69.08 -0.15 5.79 16 13 H 0.04 1.04 6.15 -51.93 -0.32 0.72 16 14 C -0.15 -3.59 9.21 37.16 0.34 -3.24 16 15 C -0.62 -16.90 8.95 -34.44 -0.31 -17.21 16 16 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 17 C 0.05 1.30 5.20 -17.82 -0.09 1.20 16 18 N -0.89 -26.39 13.70 55.43 0.76 -25.63 16 19 Si 1.03 25.31 26.45 -169.99 -4.50 20.81 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.40 6.15 56.52 0.35 -6.05 16 23 C -0.11 -1.50 8.99 -39.59 -0.36 -1.86 16 24 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.81 7.26 -52.49 -0.38 1.43 16 30 H 0.07 0.81 7.27 -51.93 -0.38 0.43 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 33 H 0.06 0.80 7.27 -51.93 -0.38 0.43 16 34 H 0.07 0.66 7.76 -51.92 -0.40 0.26 16 35 H 0.06 0.76 7.97 -51.92 -0.41 0.35 16 36 H 0.39 7.13 7.44 -40.82 -0.30 6.82 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.38 5.49 -51.93 -0.28 1.10 16 40 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 41 H 0.12 1.41 5.91 -52.48 -0.31 1.09 16 42 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -31.83 336.36 -7.37 -39.20 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.54 Total: 6.04 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.98 Total: -18.25 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.49 Total: -40.20 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.50 Total: 20.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.83 -7.37 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171293857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.390 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds