Wall clock time and date at job start Mon Mar 30 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 120.00509 * 2 1 4 4 C 1.38233 * 120.00035 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00237 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46963 * 305.45007 * 6 5 4 8 8 C 1.52992 * 109.47000 * 185.44292 * 6 5 4 9 9 C 1.50709 * 109.46862 * 65.44630 * 6 5 4 10 10 O 1.21281 * 119.99906 * 5.56667 * 9 6 5 11 11 N 1.34771 * 119.99571 * 185.56505 * 9 6 5 12 12 C 1.46503 * 119.99501 * 180.02562 * 11 9 6 13 13 H 1.08991 * 109.47390 * 324.99908 * 12 11 9 14 14 C 1.52999 * 109.47031 * 85.00235 * 12 11 9 15 15 C 1.50703 * 109.47098 * 204.99552 * 12 11 9 16 16 H 1.08003 * 119.99629 * 354.31519 * 15 12 11 17 17 C 1.37875 * 120.00126 * 174.30693 * 15 12 11 18 18 N 1.31516 * 119.99915 * 156.53685 * 17 15 12 19 19 Si 1.86804 * 119.99983 * 336.81226 * 17 15 12 20 20 H 1.48503 * 109.46861 * 179.72251 * 19 17 15 21 21 H 1.48500 * 109.46903 * 299.72233 * 19 17 15 22 22 H 1.48494 * 109.46982 * 59.72401 * 19 17 15 23 23 C 1.38233 * 119.99737 * 0.25192 * 5 4 3 24 24 C 1.38229 * 120.00236 * 359.47046 * 23 5 4 25 25 H 1.09004 * 109.47143 * 89.99686 * 1 2 3 26 26 H 1.08993 * 109.47487 * 209.99917 * 1 2 3 27 27 H 1.09005 * 109.47008 * 330.00437 * 1 2 3 28 28 H 1.07998 * 119.99765 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.99760 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46638 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46653 * 299.99678 * 7 6 5 32 32 H 1.08994 * 109.47321 * 60.00256 * 7 6 5 33 33 H 1.08998 * 109.47808 * 300.00479 * 8 6 5 34 34 H 1.09007 * 109.46934 * 60.00693 * 8 6 5 35 35 H 1.09008 * 109.47113 * 179.97438 * 8 6 5 36 36 H 0.97001 * 120.00474 * 0.02562 * 11 9 6 37 37 H 1.09001 * 109.47379 * 293.32016 * 14 12 11 38 38 H 1.09003 * 109.47690 * 53.32542 * 14 12 11 39 39 H 1.09003 * 109.47186 * 173.32075 * 14 12 11 40 40 H 0.96999 * 119.99619 * 355.21397 * 18 17 15 41 41 H 1.08007 * 119.99912 * 179.72826 * 23 5 4 42 42 H 1.08007 * 120.00353 * 180.27426 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 5.7787 -0.0003 0.0005 7 6 6.2887 0.8363 -1.1746 8 6 6.2886 -1.4362 -0.1363 9 6 6.2811 0.5902 1.2930 10 8 5.4976 0.8799 2.1722 11 7 7.6009 0.7961 1.4716 12 6 8.0893 1.3695 2.7281 13 1 7.3666 2.0950 3.1015 14 6 8.2728 0.2549 3.7600 15 6 9.4102 2.0541 2.4881 16 1 9.8873 1.9834 1.5217 17 6 10.0096 2.7708 3.5020 18 7 11.3089 2.9733 3.4849 19 14 8.9771 3.4478 4.9039 20 1 9.8541 4.1689 5.8611 21 1 7.9600 4.3843 4.3621 22 1 8.2967 2.3282 5.6029 23 6 3.5804 -1.1972 -0.0053 24 6 2.1982 -1.1972 0.0000 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 0.0001 30 1 7.3787 0.8359 -1.1748 31 1 5.9254 0.4093 -2.1093 32 1 5.9255 1.8593 -1.0770 33 1 5.9252 -2.0322 0.7008 34 1 5.9253 -1.8632 -1.0711 35 1 7.3787 -1.4363 -0.1367 36 1 8.2275 0.5647 0.7682 37 1 7.3001 -0.1614 4.0221 38 1 8.9024 -0.5294 3.3398 39 1 8.7466 0.6614 4.6536 40 1 11.8551 2.5606 2.7976 41 1 4.1204 -2.1326 -0.0097 42 1 1.6581 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171293857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:59 Heat of formation + Delta-G solvation = -51.979867 kcal Electronic energy + Delta-G solvation = -21557.326071 eV Core-core repulsion = 18500.598286 eV Total energy + Delta-G solvation = -3056.727785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58913 -39.82630 -36.96994 -36.41127 -34.47534 -32.69275 -31.96877 -31.07436 -28.36582 -27.45083 -26.92275 -24.84688 -23.24251 -22.85117 -21.59646 -20.68742 -19.53704 -17.95059 -17.46660 -16.83609 -16.27816 -15.91611 -15.67764 -15.43120 -15.01472 -14.76874 -14.57399 -14.48228 -14.36725 -14.22333 -13.79927 -13.39788 -13.31921 -13.25746 -13.05178 -12.95777 -12.71711 -12.55058 -12.47152 -12.35760 -12.04637 -11.79116 -11.72197 -11.58220 -11.24166 -10.60914 -10.47212 -9.90163 -9.76441 -9.36659 -8.82158 -6.43513 0.43296 0.55076 1.44247 1.46674 1.67957 1.76387 2.39677 2.43546 2.93082 2.95402 3.50828 3.77273 3.92918 4.06576 4.09878 4.13154 4.17711 4.47407 4.55450 4.56323 4.67713 4.69126 4.76195 4.77110 4.81045 4.85132 4.87113 4.88835 4.98922 5.06234 5.15962 5.19622 5.23582 5.31712 5.41180 5.55465 5.64686 5.66675 5.72773 5.74661 6.01023 6.16669 6.52354 6.84962 7.25394 7.44165 8.55159 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.004508 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961982 B = 6210.212170 C = 6644.406707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.074 4.074 6 C -0.038 4.038 7 C -0.135 4.135 8 C -0.138 4.138 9 C 0.510 3.490 10 O -0.588 6.588 11 N -0.700 5.700 12 C 0.246 3.754 13 H 0.017 0.983 14 C -0.147 4.147 15 C -0.620 4.620 16 H 0.044 0.956 17 C 0.005 3.995 18 N -0.918 5.918 19 Si 1.064 2.936 20 H -0.278 1.278 21 H -0.276 1.276 22 H -0.257 1.257 23 C -0.119 4.119 24 C -0.128 4.128 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.262 0.738 41 H 0.143 0.857 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 -9.921 -11.027 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.129 4.129 5 C -0.075 4.075 6 C -0.041 4.041 7 C -0.192 4.192 8 C -0.195 4.195 9 C 0.297 3.703 10 O -0.469 6.469 11 N -0.349 5.349 12 C 0.141 3.859 13 H 0.035 0.965 14 C -0.205 4.205 15 C -0.658 4.658 16 H 0.062 0.938 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.887 3.113 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.181 1.181 23 C -0.137 4.137 24 C -0.146 4.146 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.148 0.852 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.238 0.762 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.161 0.839 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.059 -8.788 -9.030 22.020 hybrid contribution 0.917 -0.491 -1.517 1.839 sum -17.142 -9.278 -10.547 22.163 Atomic orbital electron populations 1.20810 0.89190 1.03424 1.03174 1.20276 0.97599 0.92854 0.99061 1.21187 0.93587 0.98746 1.01721 1.20982 0.94962 0.97459 0.99490 1.19428 0.93184 0.94045 1.00814 1.19747 0.92841 0.98975 0.92544 1.21892 1.01675 0.98954 0.96716 1.21946 1.01915 0.91874 1.03764 1.21108 0.82154 0.77687 0.89383 1.90629 1.56365 1.53673 1.46183 1.46108 1.06996 1.62775 1.18977 1.18681 0.93189 0.91484 0.82502 0.96481 1.22283 0.99204 0.99569 0.99481 1.22149 1.06031 1.37642 0.99971 0.93792 1.26648 0.96591 0.94431 1.02057 1.70959 1.05328 1.44745 1.34144 0.83759 0.74819 0.77831 0.74870 1.20359 1.20212 1.18129 1.21368 0.94812 0.97721 0.99765 1.21314 0.93897 0.98459 1.00943 0.89933 0.90490 0.91350 0.85184 0.88053 0.91156 0.89018 0.93219 0.92255 0.88401 0.91125 0.76249 0.94688 0.92797 0.93133 0.92887 0.83917 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.23 0.71 -0.93 16 2 C -0.10 -2.17 5.88 -19.86 -0.12 -2.29 16 3 C -0.13 -3.48 9.70 22.27 0.22 -3.26 16 4 C -0.11 -3.35 8.36 22.27 0.19 -3.17 16 5 C -0.07 -2.13 4.24 -19.87 -0.08 -2.22 16 6 C -0.04 -1.07 0.72 -53.67 -0.04 -1.11 16 7 C -0.14 -3.26 8.07 71.98 0.58 -2.68 16 8 C -0.14 -2.98 7.10 71.98 0.51 -2.47 16 9 C 0.51 19.79 6.31 87.66 0.55 20.34 16 10 O -0.59 -27.69 15.19 -3.03 -0.05 -27.74 16 11 N -0.70 -28.44 4.90 -446.09 -2.19 -30.62 16 12 C 0.25 12.01 2.16 44.25 0.10 12.10 16 13 H 0.02 0.93 6.15 -2.39 -0.01 0.91 16 14 C -0.15 -6.67 9.21 71.98 0.66 -6.01 16 15 C -0.62 -33.94 8.95 25.60 0.23 -33.71 16 16 H 0.04 2.52 7.96 -2.91 -0.02 2.49 16 17 C 0.01 0.30 5.20 84.65 0.44 0.74 16 18 N -0.92 -55.09 13.70 21.45 0.29 -54.80 16 19 Si 1.06 51.09 26.45 68.60 1.81 52.90 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.26 -11.51 6.15 99.48 0.61 -10.90 16 23 C -0.12 -2.88 8.99 22.27 0.20 -2.68 16 24 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 25 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.08 0.96 8.08 -2.39 -0.02 0.95 16 27 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 28 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.10 3.27 7.26 -2.91 -0.02 3.25 16 30 H 0.07 1.62 7.27 -2.39 -0.02 1.60 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.32 7.10 -2.39 -0.02 1.30 16 33 H 0.06 1.35 7.27 -2.39 -0.02 1.33 16 34 H 0.10 1.55 7.76 -2.38 -0.02 1.53 16 35 H 0.07 1.46 7.97 -2.38 -0.02 1.44 16 36 H 0.40 14.47 7.44 -92.71 -0.69 13.78 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 2.35 5.49 -2.39 -0.01 2.33 16 40 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 41 H 0.14 2.79 5.91 -2.91 -0.02 2.77 16 42 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -69.10 336.36 4.43 -64.67 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.18 Total: 25.47 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.36 Total: -29.89 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.89 Total: -85.42 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.81 Total: 52.90 kcal Total: -69.10 4.43 -64.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171293857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.694 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds