Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38240 * 120.00200 * 2 1 4 4 C 1.38228 * 119.99925 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00265 * 359.95637 * 4 3 2 7 7 C 1.38230 * 119.99855 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99928 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47648 * 90.00027 * 8 7 6 10 10 C 1.50697 * 109.47648 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38233 * 120.00045 * 180.23721 * 2 1 3 25 25 H 1.09002 * 109.47279 * 89.99275 * 1 2 3 26 26 H 1.08995 * 109.46973 * 209.99734 * 1 2 3 27 27 H 1.09006 * 109.46744 * 330.00056 * 1 2 3 28 28 H 1.07997 * 119.99572 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47191 * 269.97662 * 5 4 3 30 30 H 1.08997 * 109.47313 * 29.97860 * 5 4 3 31 31 H 1.09000 * 109.47198 * 149.98068 * 5 4 3 32 32 H 1.08006 * 119.99999 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47433 * 329.99719 * 8 7 6 34 34 H 1.09001 * 109.47090 * 210.00266 * 8 7 6 35 35 H 1.09001 * 109.46954 * 59.99399 * 9 8 7 36 36 H 1.09001 * 109.47071 * 300.00252 * 9 8 7 37 37 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 39 39 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 40 40 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 41 41 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 42 42 H 1.08005 * 120.00123 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0000 9 6 4.5896 -2.9439 1.4424 10 6 5.3436 -4.2487 1.4422 11 8 5.6463 -4.7739 0.3918 12 7 5.6815 -4.8319 2.6093 13 6 6.4141 -6.1006 2.6090 14 1 6.0846 -6.7102 1.7677 15 6 7.9135 -5.8238 2.4821 16 6 6.1463 -6.8355 3.8972 17 1 5.5688 -6.3634 4.6782 18 6 6.6387 -8.1105 4.0787 19 7 6.6757 -8.6357 5.2837 20 14 7.2603 -9.0889 2.6139 21 1 6.1428 -9.8769 2.0347 22 1 7.7938 -8.1581 1.5871 23 1 8.3386 -10.0097 3.0552 24 6 2.1982 -1.1971 -0.0050 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7451 3.2621 0.5124 31 1 5.2865 2.3721 0.5127 32 1 5.3518 -0.0001 -0.0002 33 1 5.2862 -2.3721 -0.5142 34 1 3.7447 -3.2619 -0.5135 35 1 3.6374 -3.0741 1.9566 36 1 5.1789 -2.1842 1.9559 37 1 5.4391 -4.4120 3.4494 38 1 8.4661 -6.7562 2.5967 39 1 8.1221 -5.3960 1.5014 40 1 8.2203 -5.1218 3.2574 41 1 6.4225 -8.1023 6.0534 42 1 1.6582 -2.1325 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178281407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = -47.033526 kcal Electronic energy + Delta-G solvation = -20357.776325 eV Core-core repulsion = 17301.263030 eV Total energy + Delta-G solvation = -3056.513295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86822 -38.94130 -35.17546 -34.27466 -33.68107 -32.43371 -30.70880 -29.27962 -27.48050 -26.83368 -25.00610 -24.48514 -21.07062 -20.87864 -20.12025 -19.49443 -17.74587 -16.51935 -16.20136 -16.03547 -15.29133 -14.83258 -14.41324 -14.26782 -13.77893 -13.43924 -13.20374 -13.16874 -12.99766 -12.90311 -12.75530 -12.53294 -12.27241 -12.21488 -12.05778 -11.63040 -11.39008 -11.33162 -11.22458 -10.95598 -10.80231 -10.54291 -10.11964 -9.66057 -9.20711 -9.01726 -8.67351 -8.65083 -8.40904 -8.12824 -6.56633 -4.21790 1.24516 1.24581 3.28661 3.41799 3.45418 3.55878 3.60493 4.04547 4.44372 4.59486 4.62398 4.72123 5.01308 5.11446 5.14217 5.17793 5.20094 5.22340 5.34310 5.38954 5.40389 5.41843 5.60866 5.61445 5.64540 5.79240 5.87961 5.99661 6.10603 6.25372 6.40154 6.43092 6.44920 6.55123 6.60340 6.68657 6.92804 6.97593 7.30219 7.42049 7.67955 8.24342 8.50786 8.71376 9.01319 9.47176 10.82685 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003123 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.828518 B = 8962.705460 C = 9231.432530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.067 4.067 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.500 3.500 11 O -0.559 6.559 12 N -0.704 5.704 13 C 0.240 3.760 14 H 0.042 0.958 15 C -0.154 4.154 16 C -0.617 4.617 17 H 0.061 0.939 18 C 0.039 3.961 19 N -0.900 5.900 20 Si 1.039 2.961 21 H -0.284 1.284 22 H -0.267 1.267 23 H -0.284 1.284 24 C -0.123 4.123 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.393 0.607 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.042 0.958 41 H 0.269 0.731 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 20.780 -9.617 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.141 4.141 7 C -0.067 4.067 8 C -0.102 4.102 9 C -0.175 4.175 10 C 0.286 3.714 11 O -0.439 6.439 12 N -0.352 5.352 13 C 0.137 3.863 14 H 0.060 0.940 15 C -0.212 4.212 16 C -0.655 4.655 17 H 0.079 0.921 18 C -0.167 4.167 19 N -0.533 5.533 20 Si 0.866 3.134 21 H -0.210 1.210 22 H -0.192 1.192 23 H -0.210 1.210 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.225 0.775 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.575 18.895 -10.774 23.032 hybrid contribution -0.765 1.706 1.083 2.161 sum -8.341 20.601 -9.691 24.246 Atomic orbital electron populations 1.20788 0.91309 1.02736 1.02238 1.19886 0.95942 0.93113 0.99337 1.20843 0.93492 0.97373 1.03034 1.19880 0.93809 0.95234 0.99409 1.20784 0.99940 0.94093 1.02222 1.20952 0.99761 0.91421 1.01987 1.19963 0.93690 0.95095 0.98000 1.20331 1.00699 0.93175 0.96025 1.21638 1.01474 0.96000 0.98354 1.20558 0.79961 0.86388 0.84542 1.90640 1.56259 1.65526 1.31454 1.46313 1.56628 1.25089 1.07179 1.19044 0.87669 0.81027 0.98587 0.94011 1.22438 0.99342 1.00905 0.98565 1.22115 1.39242 1.03096 1.01001 0.92071 1.25691 0.93940 0.95499 1.01556 1.70825 1.43455 1.40399 0.98631 0.84176 0.77411 0.76214 0.75592 1.21035 1.19196 1.20973 1.20968 0.93636 0.97611 1.01871 0.91266 0.91450 0.91696 0.86458 0.91280 0.91698 0.91495 0.86098 0.90229 0.90168 0.89302 0.89401 0.77457 0.92487 0.95174 0.93867 0.92078 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.08 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.13 -1.27 9.36 -39.58 -0.37 -1.64 16 4 C -0.08 -0.84 5.88 -104.62 -0.62 -1.45 16 5 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 6 C -0.12 -1.37 9.36 -39.58 -0.37 -1.74 16 7 C -0.07 -0.80 5.13 -104.63 -0.54 -1.34 16 8 C -0.06 -0.85 4.63 -27.89 -0.13 -0.98 16 9 C -0.13 -1.85 5.68 -27.89 -0.16 -2.01 16 10 C 0.50 9.51 7.79 -10.99 -0.09 9.43 16 11 O -0.56 -12.63 15.64 5.56 0.09 -12.54 16 12 N -0.70 -14.38 5.07 -54.93 -0.28 -14.66 16 13 C 0.24 5.86 2.11 -69.08 -0.15 5.71 16 14 H 0.04 1.11 6.21 -51.93 -0.32 0.78 16 15 C -0.15 -3.53 8.76 37.16 0.33 -3.20 16 16 C -0.62 -16.86 9.02 -34.44 -0.31 -17.17 16 17 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 18 C 0.04 1.12 5.33 -17.82 -0.09 1.02 16 19 N -0.90 -27.02 13.69 55.43 0.76 -26.26 16 20 Si 1.04 25.23 26.17 -169.99 -4.45 20.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.14 5.53 56.52 0.31 -5.83 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -1.38 9.36 -39.58 -0.37 -1.75 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 34 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.39 7.12 8.53 -40.82 -0.35 6.77 16 38 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.27 7.98 8.73 -40.82 -0.36 7.63 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -31.94 346.58 -8.33 -40.27 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.91 Total: 4.76 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.76 Total: -17.57 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.48 Total: -40.92 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.45 Total: 20.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.94 -8.33 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.766 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds