Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38240 * 120.00200 * 2 1 4 4 C 1.38228 * 119.99925 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00265 * 359.95637 * 4 3 2 7 7 C 1.38230 * 119.99855 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99928 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47648 * 90.00027 * 8 7 6 10 10 C 1.50697 * 109.47648 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38233 * 120.00045 * 180.23721 * 2 1 3 25 25 H 1.09002 * 109.47279 * 89.99275 * 1 2 3 26 26 H 1.08995 * 109.46973 * 209.99734 * 1 2 3 27 27 H 1.09006 * 109.46744 * 330.00056 * 1 2 3 28 28 H 1.07997 * 119.99572 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47191 * 269.97662 * 5 4 3 30 30 H 1.08997 * 109.47313 * 29.97860 * 5 4 3 31 31 H 1.09000 * 109.47198 * 149.98068 * 5 4 3 32 32 H 1.08006 * 119.99999 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47433 * 329.99719 * 8 7 6 34 34 H 1.09001 * 109.47090 * 210.00266 * 8 7 6 35 35 H 1.09001 * 109.46954 * 59.99399 * 9 8 7 36 36 H 1.09001 * 109.47071 * 300.00252 * 9 8 7 37 37 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 39 39 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 40 40 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 41 41 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 42 42 H 1.08005 * 120.00123 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0000 9 6 4.5896 -2.9439 1.4424 10 6 5.3436 -4.2487 1.4422 11 8 5.6463 -4.7739 0.3918 12 7 5.6815 -4.8319 2.6093 13 6 6.4141 -6.1006 2.6090 14 1 6.0846 -6.7102 1.7677 15 6 7.9135 -5.8238 2.4821 16 6 6.1463 -6.8355 3.8972 17 1 5.5688 -6.3634 4.6782 18 6 6.6387 -8.1105 4.0787 19 7 6.6757 -8.6357 5.2837 20 14 7.2603 -9.0889 2.6139 21 1 6.1428 -9.8769 2.0347 22 1 7.7938 -8.1581 1.5871 23 1 8.3386 -10.0097 3.0552 24 6 2.1982 -1.1971 -0.0050 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7451 3.2621 0.5124 31 1 5.2865 2.3721 0.5127 32 1 5.3518 -0.0001 -0.0002 33 1 5.2862 -2.3721 -0.5142 34 1 3.7447 -3.2619 -0.5135 35 1 3.6374 -3.0741 1.9566 36 1 5.1789 -2.1842 1.9559 37 1 5.4391 -4.4120 3.4494 38 1 8.4661 -6.7562 2.5967 39 1 8.1221 -5.3960 1.5014 40 1 8.2203 -5.1218 3.2574 41 1 6.4225 -8.1023 6.0534 42 1 1.6582 -2.1325 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178281407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = -65.675086 kcal Electronic energy + Delta-G solvation = -20358.584684 eV Core-core repulsion = 17301.263030 eV Total energy + Delta-G solvation = -3057.321654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90301 -40.28982 -36.94086 -35.37608 -34.46422 -34.36153 -32.11434 -30.69384 -28.14977 -27.53570 -26.91522 -25.79529 -22.69013 -21.59510 -21.31615 -21.04850 -19.75173 -17.92367 -17.15611 -17.10868 -16.89760 -16.11093 -15.65682 -15.24430 -14.99605 -14.72851 -14.55264 -14.50464 -14.09136 -13.98772 -13.79744 -13.73693 -13.36160 -13.32605 -13.30995 -13.27907 -12.77896 -12.48719 -12.15400 -12.12149 -12.05732 -11.79356 -11.73953 -11.52749 -11.12204 -10.79285 -10.57893 -9.89221 -9.48833 -9.43296 -8.80748 -6.46642 0.43822 0.46916 1.47718 1.48680 1.70270 1.76573 2.42474 2.48017 2.82742 2.99723 3.70655 3.85804 3.95326 4.01168 4.19120 4.25976 4.29696 4.47884 4.50990 4.51890 4.64057 4.69403 4.72493 4.76292 4.78578 4.81950 4.83537 4.86295 5.06681 5.07368 5.08971 5.14162 5.31670 5.38922 5.42592 5.63889 5.65384 5.67600 5.68131 5.76783 5.99720 6.16513 6.50702 6.84727 7.26660 7.44495 8.57825 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003123 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.828518 B = 8962.705460 C = 9231.432530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.113 4.113 6 C -0.137 4.137 7 C -0.078 4.078 8 C -0.057 4.057 9 C -0.120 4.120 10 C 0.499 3.501 11 O -0.595 6.595 12 N -0.707 5.707 13 C 0.242 3.758 14 H 0.023 0.977 15 C -0.148 4.148 16 C -0.613 4.613 17 H 0.040 0.960 18 C -0.006 4.006 19 N -0.930 5.930 20 Si 1.074 2.926 21 H -0.277 1.277 22 H -0.249 1.249 23 H -0.278 1.278 24 C -0.139 4.139 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.404 0.596 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 22.842 -10.521 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.089 4.089 5 C -0.169 4.169 6 C -0.155 4.155 7 C -0.078 4.078 8 C -0.095 4.095 9 C -0.159 4.159 10 C 0.287 3.713 11 O -0.477 6.477 12 N -0.355 5.355 13 C 0.137 3.863 14 H 0.041 0.959 15 C -0.207 4.207 16 C -0.651 4.651 17 H 0.058 0.942 18 C -0.206 4.206 19 N -0.564 5.564 20 Si 0.895 3.105 21 H -0.203 1.203 22 H -0.173 1.173 23 H -0.204 1.204 24 C -0.157 4.157 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.239 0.761 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.073 20.996 -11.666 25.340 hybrid contribution -0.694 1.159 1.376 1.928 sum -8.767 22.155 -10.290 25.954 Atomic orbital electron populations 1.20830 0.89637 1.03508 1.02991 1.20204 0.97311 0.92855 0.98531 1.21171 0.93645 0.98154 1.02256 1.20213 0.94272 0.95908 0.98472 1.20829 1.00010 0.93074 1.03007 1.21109 1.00228 0.91647 1.02481 1.19840 0.93935 0.94540 0.99461 1.20202 1.00258 0.93761 0.95257 1.21601 1.01680 0.93265 0.99398 1.21388 0.79186 0.87474 0.83237 1.90621 1.57608 1.66855 1.32625 1.46193 1.56740 1.24097 1.08499 1.18770 0.89111 0.82439 0.95982 0.95915 1.22331 0.97938 1.01037 0.99374 1.22281 1.38005 1.03258 1.01567 0.94154 1.26857 0.94026 0.96922 1.02794 1.70925 1.45693 1.40705 0.99113 0.83725 0.77495 0.75715 0.73524 1.20281 1.17329 1.20367 1.21111 0.93587 0.98381 1.02603 0.90444 0.91296 0.90348 0.84367 0.90440 0.90402 0.91139 0.85560 0.91138 0.91474 0.87578 0.87089 0.76143 0.92898 0.94352 0.92907 0.93182 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.76 16 2 C -0.09 -1.64 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.31 9.36 22.27 0.21 -2.10 16 4 C -0.09 -1.59 5.88 -19.87 -0.12 -1.71 16 5 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 6 C -0.14 -2.83 9.36 22.27 0.21 -2.62 16 7 C -0.08 -1.76 5.13 -19.87 -0.10 -1.86 16 8 C -0.06 -1.46 4.63 29.84 0.14 -1.32 16 9 C -0.12 -3.11 5.68 29.84 0.17 -2.94 16 10 C 0.50 18.50 7.79 87.66 0.68 19.18 16 11 O -0.60 -26.65 15.64 -3.03 -0.05 -26.70 16 12 N -0.71 -28.22 5.07 -446.10 -2.26 -30.48 16 13 C 0.24 11.64 2.11 44.25 0.09 11.74 16 14 H 0.02 1.20 6.21 -2.39 -0.01 1.18 16 15 C -0.15 -6.59 8.76 71.98 0.63 -5.96 16 16 C -0.61 -33.65 9.02 25.60 0.23 -33.42 16 17 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 18 C -0.01 -0.31 5.33 84.65 0.45 0.14 16 19 N -0.93 -56.50 13.69 21.44 0.29 -56.20 16 20 Si 1.07 50.56 26.17 68.60 1.80 52.36 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.25 -10.94 5.53 99.48 0.55 -10.39 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.14 -2.96 9.36 22.27 0.21 -2.75 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 27 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 28 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.40 14.23 8.53 -92.71 -0.79 13.44 16 38 H 0.05 2.37 5.06 -2.39 -0.01 2.35 16 39 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 42 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.24 346.58 3.91 -64.34 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.01 Total: 23.51 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.11 Total: -26.83 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.97 Total: -86.68 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.80 Total: 52.36 kcal Total: -68.24 3.91 -64.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.340 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds