Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 120.00310 * 2 1 4 4 C 1.38233 * 120.00237 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99941 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00425 * 359.95393 * 4 3 2 7 7 C 1.38245 * 119.99597 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.99910 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46500 * 90.00332 * 8 7 6 10 10 C 1.50709 * 109.46716 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.38235 * 119.99916 * 180.23343 * 2 1 3 25 25 H 1.08999 * 109.47147 * 89.99653 * 1 2 3 26 26 H 1.09004 * 109.47084 * 210.00043 * 1 2 3 27 27 H 1.09000 * 109.46625 * 329.99859 * 1 2 3 28 28 H 1.08001 * 120.00054 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47233 * 269.97714 * 5 4 3 30 30 H 1.09000 * 109.47040 * 29.97843 * 5 4 3 31 31 H 1.09004 * 109.46919 * 149.97941 * 5 4 3 32 32 H 1.08000 * 120.00698 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47301 * 330.00408 * 8 7 6 34 34 H 1.09000 * 109.47108 * 210.00094 * 8 7 6 35 35 H 1.08998 * 109.46869 * 60.00399 * 9 8 7 36 36 H 1.08995 * 109.47564 * 299.99999 * 9 8 7 37 37 H 0.96997 * 119.99849 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 39 39 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 40 40 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00559 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2718 0.0000 -0.0001 7 6 3.5805 -1.1972 0.0003 8 6 4.3340 -2.5023 0.0002 9 6 4.5894 -2.9437 1.4427 10 6 5.3424 -4.2492 1.4427 11 8 5.6453 -4.7744 0.3923 12 7 5.6792 -4.8329 2.6099 13 6 6.4116 -6.1017 2.6099 14 1 7.1039 -6.1216 1.7680 15 6 5.4221 -7.2618 2.4839 16 6 7.1826 -6.2366 3.8976 17 1 7.1325 -5.4553 4.6415 18 6 7.9530 -7.3572 4.1257 19 7 8.0145 -8.3084 3.2196 20 14 8.9093 -7.5241 5.7216 21 1 9.6517 -8.8102 5.7217 22 1 9.8694 -6.3978 5.8435 23 1 7.9665 -7.4972 6.8687 24 6 2.1981 -1.1971 -0.0049 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7450 3.2620 0.5124 31 1 5.2865 2.3720 0.5127 32 1 5.3517 -0.0001 -0.0009 33 1 5.2863 -2.3721 -0.5139 34 1 3.7448 -3.2621 -0.5133 35 1 3.6372 -3.0740 1.9568 36 1 5.1786 -2.1841 1.9563 37 1 5.4366 -4.4130 3.4499 38 1 5.9671 -8.2057 2.4834 39 1 4.7299 -7.2419 3.3256 40 1 4.8645 -7.1641 1.5524 41 1 8.5568 -9.0966 3.3800 42 1 1.6582 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178281419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -47.864526 kcal Electronic energy + Delta-G solvation = -20286.222210 eV Core-core repulsion = 17229.672880 eV Total energy + Delta-G solvation = -3056.549330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80442 -38.76291 -34.99409 -34.17469 -33.63984 -32.34687 -30.47511 -28.68672 -27.41638 -26.78895 -25.25757 -24.54882 -21.16415 -20.83416 -20.13384 -19.30883 -17.09078 -16.38027 -15.97340 -15.68271 -15.19643 -14.73524 -14.38524 -14.27944 -14.04339 -13.40435 -13.23371 -13.09264 -12.86304 -12.71979 -12.66626 -12.42218 -12.16092 -12.07344 -11.63816 -11.32475 -11.21269 -11.08549 -10.94240 -10.89906 -10.76116 -10.65016 -10.30991 -10.21881 -9.04881 -9.02009 -8.62833 -8.59253 -8.52014 -7.86866 -6.10927 -4.20299 1.29168 1.29507 3.26186 3.31311 3.32548 3.46293 3.61300 4.15345 4.39808 4.63681 4.67067 4.79978 5.05773 5.17801 5.18438 5.20989 5.27926 5.30559 5.37913 5.44023 5.46665 5.47414 5.66020 5.67584 5.69338 5.92023 5.94799 6.04953 6.16373 6.33975 6.47691 6.49388 6.66383 6.84702 6.97583 6.99006 7.17622 7.49955 7.58945 7.71648 7.93904 8.17163 8.71011 8.80278 9.18033 9.47535 10.95029 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003009 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.515314 B = 9302.490008 C = 9678.524407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.067 4.067 8 C -0.065 4.065 9 C -0.135 4.135 10 C 0.499 3.501 11 O -0.558 6.558 12 N -0.711 5.711 13 C 0.264 3.736 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.123 4.123 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.388 0.612 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.014 0.986 41 H 0.265 0.735 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 18.535 -4.509 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.141 4.141 7 C -0.067 4.067 8 C -0.103 4.103 9 C -0.175 4.175 10 C 0.284 3.716 11 O -0.437 6.437 12 N -0.359 5.359 13 C 0.162 3.838 14 H 0.066 0.934 15 C -0.205 4.205 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.211 1.211 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.220 0.780 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.745 17.935 -5.281 22.079 hybrid contribution 0.402 0.031 1.349 1.408 sum -11.343 17.966 -3.932 21.608 Atomic orbital electron populations 1.20782 0.91360 1.02680 1.02202 1.19875 0.95897 0.93131 0.99453 1.20831 0.93492 0.97342 1.03143 1.19879 0.93799 0.95238 0.99420 1.20785 0.99957 0.94087 1.02211 1.20967 0.99820 0.91409 1.01884 1.19994 0.93684 0.95170 0.97810 1.20336 1.00693 0.93046 0.96186 1.21648 1.01346 0.96336 0.98160 1.20485 0.80208 0.86204 0.84692 1.90648 1.55805 1.65828 1.31466 1.46544 1.56763 1.25689 1.06864 1.18717 0.89464 0.77690 0.97938 0.93447 1.22074 0.98586 1.03248 0.96627 1.21203 1.28653 1.04895 1.02557 0.92151 1.24898 0.96361 0.95439 0.97043 1.69898 1.39606 1.08645 1.33994 0.86505 0.79928 0.77433 0.83204 1.21124 1.20175 1.20166 1.20958 0.93639 0.97558 1.01947 0.91302 0.91489 0.91732 0.86506 0.91296 0.91733 0.91468 0.86047 0.90195 0.90236 0.89539 0.89466 0.77955 0.89198 0.95523 0.96682 0.92531 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.08 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.13 -1.31 9.36 -39.59 -0.37 -1.68 16 4 C -0.08 -0.87 5.88 -104.62 -0.62 -1.48 16 5 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 6 C -0.12 -1.42 9.36 -39.58 -0.37 -1.79 16 7 C -0.07 -0.82 5.13 -104.62 -0.54 -1.35 16 8 C -0.06 -0.90 4.64 -27.88 -0.13 -1.03 16 9 C -0.13 -1.93 5.68 -27.88 -0.16 -2.09 16 10 C 0.50 9.95 7.79 -10.98 -0.09 9.87 16 11 O -0.56 -13.38 15.65 5.56 0.09 -13.29 16 12 N -0.71 -14.99 5.07 -54.93 -0.28 -15.27 16 13 C 0.26 6.82 2.56 -69.09 -0.18 6.65 16 14 H 0.05 1.42 7.58 -51.92 -0.39 1.02 16 15 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 16 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 C -0.12 -1.41 9.36 -39.58 -0.37 -1.78 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 34 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.39 7.07 8.54 -40.82 -0.35 6.72 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -31.17 351.53 -8.96 -40.13 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.92 Total: 5.47 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.76 Total: -13.54 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.35 Total: -39.82 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.17 -8.96 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.731 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds