Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 120.00310 * 2 1 4 4 C 1.38233 * 120.00237 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99941 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00425 * 359.95393 * 4 3 2 7 7 C 1.38245 * 119.99597 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.99910 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46500 * 90.00332 * 8 7 6 10 10 C 1.50709 * 109.46716 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.38235 * 119.99916 * 180.23343 * 2 1 3 25 25 H 1.08999 * 109.47147 * 89.99653 * 1 2 3 26 26 H 1.09004 * 109.47084 * 210.00043 * 1 2 3 27 27 H 1.09000 * 109.46625 * 329.99859 * 1 2 3 28 28 H 1.08001 * 120.00054 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47233 * 269.97714 * 5 4 3 30 30 H 1.09000 * 109.47040 * 29.97843 * 5 4 3 31 31 H 1.09004 * 109.46919 * 149.97941 * 5 4 3 32 32 H 1.08000 * 120.00698 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47301 * 330.00408 * 8 7 6 34 34 H 1.09000 * 109.47108 * 210.00094 * 8 7 6 35 35 H 1.08998 * 109.46869 * 60.00399 * 9 8 7 36 36 H 1.08995 * 109.47564 * 299.99999 * 9 8 7 37 37 H 0.96997 * 119.99849 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 39 39 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 40 40 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00559 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2718 0.0000 -0.0001 7 6 3.5805 -1.1972 0.0003 8 6 4.3340 -2.5023 0.0002 9 6 4.5894 -2.9437 1.4427 10 6 5.3424 -4.2492 1.4427 11 8 5.6453 -4.7744 0.3923 12 7 5.6792 -4.8329 2.6099 13 6 6.4116 -6.1017 2.6099 14 1 7.1039 -6.1216 1.7680 15 6 5.4221 -7.2618 2.4839 16 6 7.1826 -6.2366 3.8976 17 1 7.1325 -5.4553 4.6415 18 6 7.9530 -7.3572 4.1257 19 7 8.0145 -8.3084 3.2196 20 14 8.9093 -7.5241 5.7216 21 1 9.6517 -8.8102 5.7217 22 1 9.8694 -6.3978 5.8435 23 1 7.9665 -7.4972 6.8687 24 6 2.1981 -1.1971 -0.0049 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7450 3.2620 0.5124 31 1 5.2865 2.3720 0.5127 32 1 5.3517 -0.0001 -0.0009 33 1 5.2863 -2.3721 -0.5139 34 1 3.7448 -3.2621 -0.5133 35 1 3.6372 -3.0740 1.9568 36 1 5.1786 -2.1841 1.9563 37 1 5.4366 -4.4130 3.4499 38 1 5.9671 -8.2057 2.4834 39 1 4.7299 -7.2419 3.3256 40 1 4.8645 -7.1641 1.5524 41 1 8.5568 -9.0966 3.3800 42 1 1.6582 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178281419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -65.086339 kcal Electronic energy + Delta-G solvation = -20286.969004 eV Core-core repulsion = 17229.672880 eV Total energy + Delta-G solvation = -3057.296124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84271 -40.23363 -36.81476 -35.34746 -34.34485 -34.30875 -31.77920 -30.34923 -28.12186 -27.51781 -27.35378 -25.78997 -22.89728 -21.57670 -21.29957 -20.95927 -18.88921 -17.52756 -17.16023 -17.08763 -16.90640 -16.11123 -15.96742 -15.25962 -14.93874 -14.63432 -14.47663 -14.19289 -13.97139 -13.81677 -13.74668 -13.58440 -13.29873 -13.28600 -12.98180 -12.88119 -12.77161 -12.69448 -12.27606 -12.17472 -12.11796 -12.08358 -11.77416 -11.72233 -11.12429 -10.73116 -10.56865 -9.73796 -9.46709 -9.41600 -8.18068 -6.36100 0.45609 0.48651 1.44479 1.46814 1.54684 1.84678 2.35696 2.63037 2.86249 3.12026 3.76002 3.87475 3.97252 4.04322 4.21783 4.29153 4.34377 4.51079 4.53633 4.67097 4.71577 4.75557 4.79816 4.83701 4.84994 4.87989 4.91668 5.07955 5.09132 5.09838 5.16241 5.33262 5.40696 5.43332 5.61334 5.69118 5.69339 5.69906 5.78746 5.90897 6.09707 6.18249 6.72134 6.98476 7.31982 7.58324 8.88123 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003009 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.515314 B = 9302.490008 C = 9678.524407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.113 4.113 6 C -0.138 4.138 7 C -0.077 4.077 8 C -0.058 4.058 9 C -0.117 4.117 10 C 0.495 3.505 11 O -0.603 6.603 12 N -0.708 5.708 13 C 0.269 3.731 14 H -0.004 1.004 15 C -0.134 4.134 16 C -0.550 4.550 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.405 0.595 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.011 0.989 41 H 0.266 0.734 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 20.842 -2.914 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.089 4.089 5 C -0.169 4.169 6 C -0.156 4.156 7 C -0.077 4.077 8 C -0.096 4.096 9 C -0.157 4.157 10 C 0.283 3.717 11 O -0.486 6.486 12 N -0.357 5.357 13 C 0.165 3.835 14 H 0.014 0.986 15 C -0.192 4.192 16 C -0.588 4.588 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.212 1.212 22 H -0.195 1.195 23 H -0.188 1.188 24 C -0.155 4.155 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.240 0.760 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.914 20.280 -3.666 24.321 hybrid contribution 0.728 -0.644 0.773 1.242 sum -12.187 19.636 -2.894 23.291 Atomic orbital electron populations 1.20828 0.89519 1.03577 1.02983 1.20205 0.97355 0.92785 0.98480 1.21170 0.93545 0.98216 1.02226 1.20202 0.94335 0.95803 0.98510 1.20830 1.00004 0.93119 1.02974 1.21100 1.00140 0.91763 1.02580 1.19835 0.94035 0.94385 0.99492 1.20198 1.00027 0.93859 0.95480 1.21596 1.01779 0.93124 0.99197 1.21455 0.79399 0.87473 0.83398 1.90629 1.57487 1.67415 1.33040 1.46324 1.56485 1.24517 1.08326 1.18323 0.89232 0.79967 0.95936 0.98586 1.21898 0.98305 1.02042 0.97003 1.21547 1.28918 1.05393 1.02910 0.90816 1.25839 0.97293 0.95034 1.00532 1.70054 1.40352 1.09196 1.36076 0.85372 0.78524 0.77304 0.78984 1.21158 1.19520 1.18789 1.21099 0.93409 0.98451 1.02527 0.90494 0.91175 0.90301 0.84277 0.90501 0.90276 0.91245 0.85859 0.91706 0.91541 0.87033 0.87248 0.75956 0.91540 0.94042 0.96964 0.92525 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.74 16 2 C -0.09 -1.64 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.35 9.36 22.27 0.21 -2.14 16 4 C -0.09 -1.67 5.88 -19.87 -0.12 -1.78 16 5 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 6 C -0.14 -3.04 9.36 22.27 0.21 -2.83 16 7 C -0.08 -1.85 5.13 -19.86 -0.10 -1.95 16 8 C -0.06 -1.60 4.64 29.85 0.14 -1.46 16 9 C -0.12 -3.24 5.68 29.85 0.17 -3.07 16 10 C 0.49 19.89 7.79 87.66 0.68 20.57 16 11 O -0.60 -30.04 15.65 -3.04 -0.05 -30.09 16 12 N -0.71 -29.79 5.07 -446.09 -2.26 -32.05 16 13 C 0.27 14.25 2.56 44.24 0.11 14.36 16 14 H 0.00 -0.24 7.58 -2.38 -0.02 -0.25 16 15 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 16 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 18 C 0.01 0.71 5.30 84.66 0.45 1.16 16 19 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 20 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 21 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 C -0.14 -2.98 9.36 22.27 0.21 -2.77 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 27 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 28 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 31 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 32 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 34 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.41 14.20 8.54 -92.71 -0.79 13.41 16 38 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -68.73 351.53 4.32 -64.41 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.20 Total: 25.36 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.16 Total: -18.72 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.02 Total: -85.21 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.73 4.32 -64.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178281419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.672 kcal (2) G-P(sol) polarization free energy of solvation -68.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds