Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.99984 * 2 1 4 4 C 1.38235 * 119.99867 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99813 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00082 * 359.97434 * 4 3 2 7 7 C 1.50696 * 119.99950 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47260 * 90.00511 * 7 6 4 9 9 O 1.21281 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47185 * 325.00421 * 11 10 8 13 13 C 1.53007 * 109.46819 * 85.00386 * 11 10 8 14 14 C 1.50702 * 109.47119 * 205.00085 * 11 10 8 15 15 H 1.08007 * 119.99981 * 354.48131 * 14 11 10 16 16 C 1.37872 * 120.00181 * 174.48618 * 14 11 10 17 17 N 1.31507 * 120.00188 * 164.58940 * 16 14 11 18 18 Si 1.86797 * 119.99894 * 344.86064 * 16 14 11 19 19 H 1.48501 * 109.47054 * 269.72685 * 18 16 14 20 20 H 1.48506 * 109.47355 * 29.72399 * 18 16 14 21 21 H 1.48500 * 109.47516 * 149.72369 * 18 16 14 22 22 C 1.38232 * 119.99966 * 0.28468 * 6 4 3 23 23 C 1.50705 * 120.00215 * 179.72396 * 22 6 4 24 24 C 1.38233 * 119.99979 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47524 * 89.99621 * 1 2 3 26 26 H 1.09001 * 109.47319 * 210.00060 * 1 2 3 27 27 H 1.09002 * 109.47583 * 329.99755 * 1 2 3 28 28 H 1.08002 * 120.00172 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.46428 * 269.97174 * 5 4 3 30 30 H 1.08992 * 109.46947 * 29.97180 * 5 4 3 31 31 H 1.08994 * 109.46934 * 149.97931 * 5 4 3 32 32 H 1.09001 * 109.47104 * 330.00057 * 7 6 4 33 33 H 1.09001 * 109.47310 * 210.00671 * 7 6 4 34 34 H 0.97002 * 120.00007 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.46889 * 53.54518 * 13 11 10 36 36 H 1.09000 * 109.46645 * 173.54640 * 13 11 10 37 37 H 1.08995 * 109.46571 * 293.54314 * 13 11 10 38 38 H 0.97004 * 120.00365 * 355.18112 * 17 16 14 39 39 H 1.09007 * 109.47150 * 89.99427 * 23 22 6 40 40 H 1.08998 * 109.46964 * 209.99511 * 23 22 6 41 41 H 1.08998 * 109.46749 * 329.99993 * 23 22 6 42 42 H 1.08003 * 119.99621 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0000 0.0016 7 6 5.7786 0.0000 0.0028 8 6 6.2799 0.0005 1.4239 9 8 5.4910 0.0013 2.3452 10 7 7.6047 0.0001 1.6713 11 6 8.0919 0.0011 3.0529 12 1 7.4192 0.5914 3.6750 13 6 8.1423 -1.4355 3.5770 14 6 9.4737 0.6010 3.0978 15 1 9.9781 0.8647 2.1799 16 6 10.0941 0.8131 4.3107 17 7 11.3879 1.0441 4.3559 18 14 9.0982 0.7647 5.8903 19 1 8.5927 2.1265 6.1986 20 1 7.9507 -0.1633 5.7238 21 1 9.9592 0.2923 7.0041 22 6 3.5805 -1.1971 -0.0038 23 6 4.3339 -2.5023 -0.0089 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1325 -0.0004 29 1 4.5164 2.8168 -1.0265 30 1 3.7445 3.2619 0.5144 31 1 5.2860 2.3719 0.5156 32 1 6.1423 0.8898 -0.5112 33 1 6.1424 -0.8902 -0.5105 34 1 8.2356 -0.0002 0.9345 35 1 8.7225 -2.0524 2.8908 36 1 8.6111 -1.4470 4.5609 37 1 7.1292 -1.8303 3.6525 38 1 11.9179 0.9963 3.5449 39 1 4.5152 -2.8213 1.0176 40 1 3.7451 -3.2597 -0.5262 41 1 5.2866 -2.3698 -0.5217 42 1 1.6580 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179894296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -38.408666 kcal Electronic energy + Delta-G solvation = -21365.593376 eV Core-core repulsion = 18309.454083 eV Total energy + Delta-G solvation = -3056.139293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14205 -38.56453 -35.05051 -34.10591 -33.51529 -32.42938 -30.44733 -28.90485 -27.90373 -26.66060 -25.21066 -24.69317 -21.26634 -20.70713 -19.87531 -19.43560 -17.74828 -16.35236 -16.26967 -15.89683 -15.00660 -14.30958 -14.20907 -14.16238 -13.62350 -13.26666 -13.14520 -12.95476 -12.91159 -12.75370 -12.73548 -12.55150 -12.48254 -12.19269 -11.90176 -11.64395 -11.46048 -11.26612 -11.12047 -10.77157 -10.73698 -10.54274 -10.11780 -9.65944 -9.19508 -9.01644 -8.42365 -8.40929 -8.25433 -8.11664 -6.56610 -4.21850 1.43433 1.50219 3.29891 3.41598 3.45475 3.60199 3.68846 4.20850 4.44193 4.73272 4.78721 4.87672 5.01872 5.14055 5.18430 5.30326 5.39988 5.48198 5.48990 5.49490 5.52860 5.62556 5.70812 5.74832 5.78915 5.80776 5.95661 6.00108 6.28944 6.34848 6.40515 6.55203 6.60942 6.64252 6.68820 6.80760 6.97917 7.15029 7.30644 7.43023 7.68133 8.24252 8.51657 8.71766 9.03231 9.46976 10.82618 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.004255 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.262676 B = 6578.733755 C = 6708.119218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.063 4.063 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.112 4.112 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.706 5.706 11 C 0.242 3.758 12 H 0.041 0.959 13 C -0.153 4.153 14 C -0.616 4.616 15 H 0.061 0.939 16 C 0.040 3.960 17 N -0.900 5.900 18 Si 1.038 2.962 19 H -0.284 1.284 20 H -0.267 1.267 21 H -0.284 1.284 22 C -0.065 4.065 23 C -0.118 4.118 24 C -0.128 4.128 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.392 0.608 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 -3.123 -12.104 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.063 4.063 5 C -0.174 4.174 6 C -0.062 4.062 7 C -0.152 4.152 8 C 0.289 3.711 9 O -0.424 6.424 10 N -0.354 5.354 11 C 0.138 3.862 12 H 0.059 0.941 13 C -0.212 4.212 14 C -0.654 4.654 15 H 0.079 0.921 16 C -0.166 4.166 17 N -0.533 5.533 18 Si 0.865 3.135 19 H -0.210 1.210 20 H -0.192 1.192 21 H -0.210 1.210 22 C -0.065 4.065 23 C -0.174 4.174 24 C -0.146 4.146 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.224 0.776 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.305 -2.903 -9.772 20.085 hybrid contribution 0.357 -0.188 -2.019 2.059 sum -16.948 -3.091 -11.791 20.876 Atomic orbital electron populations 1.20746 0.91521 1.02560 1.01895 1.19788 0.95692 0.93164 1.00032 1.20775 0.93307 0.97338 1.03146 1.19664 0.93609 0.94698 0.98353 1.20837 1.00640 0.94097 1.01863 1.18983 0.93648 0.92407 1.01140 1.20808 0.93193 1.04686 0.96478 1.20331 0.83172 0.77260 0.90330 1.90668 1.55355 1.50247 1.46139 1.46301 1.05511 1.72888 1.10747 1.19029 0.95431 0.93092 0.78610 0.94072 1.22433 0.98657 0.99251 1.00864 1.22109 1.00244 1.47402 0.95624 0.92051 1.25669 0.96415 0.92739 1.01804 1.70826 1.05412 1.45207 1.31859 0.84193 0.75967 0.77683 0.75671 1.21047 1.19219 1.20962 1.19639 0.93616 0.94654 0.98561 1.20860 0.99800 0.93998 1.02750 1.20755 0.93282 0.97318 1.03247 0.91506 0.91767 0.91748 0.86436 0.91279 0.91528 0.91154 0.88450 0.88350 0.77554 0.93874 0.92538 0.95217 0.92078 0.90801 0.91800 0.91412 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.09 -1.08 5.88 -104.63 -0.62 -1.70 16 3 C -0.13 -1.68 9.36 -39.58 -0.37 -2.05 16 4 C -0.06 -0.91 5.88 -104.62 -0.62 -1.52 16 5 C -0.12 -1.50 9.20 36.01 0.33 -1.17 16 6 C -0.06 -0.92 4.37 -104.63 -0.46 -1.38 16 7 C -0.11 -1.61 4.75 -29.04 -0.14 -1.74 16 8 C 0.50 9.66 7.38 -10.99 -0.08 9.58 16 9 O -0.55 -12.62 15.70 5.56 0.09 -12.53 16 10 N -0.71 -14.26 5.07 -54.93 -0.28 -14.54 16 11 C 0.24 5.86 2.11 -69.08 -0.15 5.72 16 12 H 0.04 1.09 6.21 -51.93 -0.32 0.77 16 13 C -0.15 -3.50 8.76 37.16 0.33 -3.18 16 14 C -0.62 -16.70 9.02 -34.44 -0.31 -17.01 16 15 H 0.06 1.73 7.96 -52.48 -0.42 1.31 16 16 C 0.04 1.13 5.33 -17.82 -0.09 1.04 16 17 N -0.90 -26.90 13.69 55.43 0.76 -26.14 16 18 Si 1.04 25.28 26.17 -169.99 -4.45 20.83 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.19 5.53 56.52 0.31 -5.88 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.06 -0.91 5.88 -104.62 -0.62 -1.53 16 23 C -0.12 -1.43 9.60 36.01 0.35 -1.08 16 24 C -0.13 -1.66 9.36 -39.58 -0.37 -2.03 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.07 1.02 6.36 -51.93 -0.33 0.69 16 32 H 0.10 1.21 6.70 -51.93 -0.35 0.87 16 33 H 0.10 1.19 5.94 -51.93 -0.31 0.88 16 34 H 0.39 6.96 8.53 -40.82 -0.35 6.61 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.31 5.06 -51.93 -0.26 1.04 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.07 0.75 5.94 -51.93 -0.31 0.45 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.51 337.86 -7.77 -40.27 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.53 Total: 5.72 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.45 Total: -18.71 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.48 Total: -40.68 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.45 Total: 20.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.51 -7.77 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179894296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.866 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds