Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.99984 * 2 1 4 4 C 1.38235 * 119.99867 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99813 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00082 * 359.97434 * 4 3 2 7 7 C 1.50696 * 119.99950 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47260 * 90.00511 * 7 6 4 9 9 O 1.21281 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47185 * 325.00421 * 11 10 8 13 13 C 1.53007 * 109.46819 * 85.00386 * 11 10 8 14 14 C 1.50702 * 109.47119 * 205.00085 * 11 10 8 15 15 H 1.08007 * 119.99981 * 354.48131 * 14 11 10 16 16 C 1.37872 * 120.00181 * 174.48618 * 14 11 10 17 17 N 1.31507 * 120.00188 * 164.58940 * 16 14 11 18 18 Si 1.86797 * 119.99894 * 344.86064 * 16 14 11 19 19 H 1.48501 * 109.47054 * 269.72685 * 18 16 14 20 20 H 1.48506 * 109.47355 * 29.72399 * 18 16 14 21 21 H 1.48500 * 109.47516 * 149.72369 * 18 16 14 22 22 C 1.38232 * 119.99966 * 0.28468 * 6 4 3 23 23 C 1.50705 * 120.00215 * 179.72396 * 22 6 4 24 24 C 1.38233 * 119.99979 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47524 * 89.99621 * 1 2 3 26 26 H 1.09001 * 109.47319 * 210.00060 * 1 2 3 27 27 H 1.09002 * 109.47583 * 329.99755 * 1 2 3 28 28 H 1.08002 * 120.00172 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.46428 * 269.97174 * 5 4 3 30 30 H 1.08992 * 109.46947 * 29.97180 * 5 4 3 31 31 H 1.08994 * 109.46934 * 149.97931 * 5 4 3 32 32 H 1.09001 * 109.47104 * 330.00057 * 7 6 4 33 33 H 1.09001 * 109.47310 * 210.00671 * 7 6 4 34 34 H 0.97002 * 120.00007 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.46889 * 53.54518 * 13 11 10 36 36 H 1.09000 * 109.46645 * 173.54640 * 13 11 10 37 37 H 1.08995 * 109.46571 * 293.54314 * 13 11 10 38 38 H 0.97004 * 120.00365 * 355.18112 * 17 16 14 39 39 H 1.09007 * 109.47150 * 89.99427 * 23 22 6 40 40 H 1.08998 * 109.46964 * 209.99511 * 23 22 6 41 41 H 1.08998 * 109.46749 * 329.99993 * 23 22 6 42 42 H 1.08003 * 119.99621 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0000 0.0016 7 6 5.7786 0.0000 0.0028 8 6 6.2799 0.0005 1.4239 9 8 5.4910 0.0013 2.3452 10 7 7.6047 0.0001 1.6713 11 6 8.0919 0.0011 3.0529 12 1 7.4192 0.5914 3.6750 13 6 8.1423 -1.4355 3.5770 14 6 9.4737 0.6010 3.0978 15 1 9.9781 0.8647 2.1799 16 6 10.0941 0.8131 4.3107 17 7 11.3879 1.0441 4.3559 18 14 9.0982 0.7647 5.8903 19 1 8.5927 2.1265 6.1986 20 1 7.9507 -0.1633 5.7238 21 1 9.9592 0.2923 7.0041 22 6 3.5805 -1.1971 -0.0038 23 6 4.3339 -2.5023 -0.0089 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1325 -0.0004 29 1 4.5164 2.8168 -1.0265 30 1 3.7445 3.2619 0.5144 31 1 5.2860 2.3719 0.5156 32 1 6.1423 0.8898 -0.5112 33 1 6.1424 -0.8902 -0.5105 34 1 8.2356 -0.0002 0.9345 35 1 8.7225 -2.0524 2.8908 36 1 8.6111 -1.4470 4.5609 37 1 7.1292 -1.8303 3.6525 38 1 11.9179 0.9963 3.5449 39 1 4.5152 -2.8213 1.0176 40 1 3.7451 -3.2597 -0.5262 41 1 5.2866 -2.3698 -0.5217 42 1 1.6580 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179894296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -58.163507 kcal Electronic energy + Delta-G solvation = -21366.450010 eV Core-core repulsion = 18309.454083 eV Total energy + Delta-G solvation = -3056.995928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31635 -39.97469 -36.84645 -35.18215 -34.48745 -34.44913 -32.01910 -30.23372 -28.81526 -27.61089 -26.91378 -26.11848 -22.92983 -21.68600 -21.35026 -20.80937 -19.72540 -17.89198 -17.40788 -17.23068 -16.47547 -15.71425 -15.53761 -15.23962 -15.09860 -14.67018 -14.50003 -14.30727 -14.08830 -13.94686 -13.86321 -13.73572 -13.63191 -13.49238 -13.35972 -13.29380 -12.71796 -12.49779 -12.43357 -12.06757 -12.05605 -11.73898 -11.70345 -11.53868 -11.11909 -10.80226 -10.57447 -9.87430 -9.41032 -9.27265 -8.79563 -6.45602 0.42355 0.50636 1.46658 1.47446 1.69041 1.79467 2.41576 2.46399 2.90297 3.00102 3.69237 3.84998 3.98548 4.01355 4.15692 4.17531 4.39475 4.45296 4.51099 4.56134 4.61435 4.68527 4.71233 4.74782 4.78794 4.80079 4.80481 4.86986 4.98209 5.02600 5.09220 5.10338 5.37327 5.39192 5.42807 5.61511 5.66068 5.66420 5.69915 5.79254 6.00865 6.19590 6.52140 6.87552 7.27342 7.47993 8.58730 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.004255 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.262676 B = 6578.733755 C = 6708.119218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.089 4.089 7 C -0.099 4.099 8 C 0.507 3.493 9 O -0.586 6.586 10 N -0.707 5.707 11 C 0.245 3.755 12 H 0.020 0.980 13 C -0.147 4.147 14 C -0.611 4.611 15 H 0.042 0.958 16 C -0.004 4.004 17 N -0.929 5.929 18 Si 1.071 2.929 19 H -0.278 1.278 20 H -0.252 1.252 21 H -0.278 1.278 22 C -0.079 4.079 23 C -0.116 4.116 24 C -0.141 4.141 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 -3.724 -13.087 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.090 4.090 7 C -0.138 4.138 8 C 0.294 3.706 9 O -0.467 6.467 10 N -0.356 5.356 11 C 0.140 3.860 12 H 0.038 0.962 13 C -0.206 4.206 14 C -0.649 4.649 15 H 0.060 0.940 16 C -0.205 4.205 17 N -0.564 5.564 18 Si 0.893 3.107 19 H -0.204 1.204 20 H -0.176 1.176 21 H -0.203 1.203 22 C -0.080 4.080 23 C -0.172 4.172 24 C -0.159 4.159 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.317 -3.507 -10.799 22.407 hybrid contribution 0.923 0.023 -1.800 2.023 sum -18.394 -3.484 -12.600 22.566 Atomic orbital electron populations 1.20800 0.89175 1.03367 1.03171 1.20226 0.97532 0.92780 0.98477 1.21078 0.93124 0.98551 1.03175 1.19965 0.94486 0.95087 0.98521 1.20837 0.99425 0.93861 1.03066 1.19156 0.93780 0.93144 1.02875 1.20756 0.93278 1.06783 0.93029 1.21084 0.82046 0.75434 0.92029 1.90642 1.56163 1.51852 1.48000 1.46154 1.06556 1.73324 1.09568 1.18731 0.93195 0.93385 0.80704 0.96226 1.22318 0.99152 0.98290 1.00791 1.22269 1.01334 1.46523 0.94753 0.93952 1.26775 0.96533 0.92306 1.04843 1.70920 1.06380 1.47653 1.31461 0.83750 0.75471 0.78389 0.73047 1.20383 1.17587 1.20315 1.19965 0.94454 0.95109 0.98426 1.20876 1.00519 0.93850 1.01999 1.21093 0.93181 0.98507 1.03085 0.89873 0.90913 0.91024 0.84717 0.89038 0.90936 0.93300 0.86561 0.85852 0.76142 0.92774 0.93043 0.94612 0.93116 0.92566 0.89521 0.90616 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.23 0.71 -0.97 16 2 C -0.09 -2.06 5.88 -19.87 -0.12 -2.18 16 3 C -0.14 -3.48 9.36 22.27 0.21 -3.27 16 4 C -0.08 -2.22 5.88 -19.86 -0.12 -2.34 16 5 C -0.12 -2.81 9.20 71.24 0.66 -2.16 16 6 C -0.09 -2.56 4.37 -19.87 -0.09 -2.65 16 7 C -0.10 -2.70 4.75 29.10 0.14 -2.56 16 8 C 0.51 19.02 7.38 87.66 0.65 19.67 16 9 O -0.59 -26.99 15.70 -3.03 -0.05 -27.04 16 10 N -0.71 -28.05 5.07 -446.09 -2.26 -30.32 16 11 C 0.24 11.76 2.11 44.25 0.09 11.86 16 12 H 0.02 1.05 6.21 -2.39 -0.01 1.03 16 13 C -0.15 -6.55 8.76 71.98 0.63 -5.92 16 14 C -0.61 -33.30 9.02 25.60 0.23 -33.07 16 15 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 16 C 0.00 -0.22 5.33 84.65 0.45 0.23 16 17 N -0.93 -56.23 13.69 21.44 0.29 -55.94 16 18 Si 1.07 50.83 26.17 68.60 1.80 52.63 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.25 -11.23 5.53 99.48 0.55 -10.68 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.08 -2.13 5.88 -19.86 -0.12 -2.24 16 23 C -0.12 -2.61 9.60 71.24 0.68 -1.93 16 24 C -0.14 -3.39 9.36 22.27 0.21 -3.18 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 27 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 28 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.05 1.38 6.36 -2.39 -0.02 1.37 16 32 H 0.12 2.70 6.70 -2.39 -0.02 2.68 16 33 H 0.12 2.69 5.94 -2.39 -0.01 2.68 16 34 H 0.40 13.98 8.53 -92.71 -0.79 13.19 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 2.32 5.06 -2.39 -0.01 2.30 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.26 15.68 8.73 -92.71 -0.81 14.87 16 39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.08 1.53 5.94 -2.39 -0.01 1.51 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -70.04 337.86 4.04 -66.01 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.03 Total: 25.35 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 4.22 Total: -30.70 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -1.97 Total: -86.25 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.80 Total: 52.63 kcal Total: -70.04 4.04 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179894296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.842 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds