Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38238 * 119.99499 * 2 1 4 4 C 1.38236 * 119.99529 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99706 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99979 * 359.97438 * 4 3 2 7 7 C 1.50700 * 119.99980 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.46869 * 90.00014 * 7 6 4 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52997 * 109.47288 * 275.00460 * 11 10 8 14 14 C 1.50700 * 109.47343 * 155.00212 * 11 10 8 15 15 H 1.07995 * 119.99741 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00332 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99735 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47297 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47136 * 120.00166 * 18 16 14 21 21 H 1.48499 * 109.47166 * 239.99464 * 18 16 14 22 22 C 1.38233 * 120.00375 * 0.27509 * 6 4 3 23 23 C 1.50699 * 120.00443 * 179.72682 * 22 6 4 24 24 C 1.38234 * 120.00036 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46778 * 90.00372 * 1 2 3 26 26 H 1.09003 * 109.46896 * 209.99656 * 1 2 3 27 27 H 1.08997 * 109.47071 * 329.99500 * 1 2 3 28 28 H 1.07994 * 120.00177 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46747 * 269.97707 * 5 4 3 30 30 H 1.08998 * 109.47260 * 29.97775 * 5 4 3 31 31 H 1.08997 * 109.47176 * 149.98416 * 5 4 3 32 32 H 1.09004 * 109.47210 * 330.00307 * 7 6 4 33 33 H 1.08994 * 109.47551 * 209.99960 * 7 6 4 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 35 35 H 1.09006 * 109.47495 * 60.00048 * 13 11 10 36 36 H 1.09007 * 109.47320 * 179.97438 * 13 11 10 37 37 H 1.08993 * 109.47268 * 299.99834 * 13 11 10 38 38 H 0.97002 * 120.00028 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47201 * 89.99533 * 23 22 6 40 40 H 1.08993 * 109.47314 * 210.00219 * 23 22 6 41 41 H 1.09003 * 109.46942 * 329.99775 * 23 22 6 42 42 H 1.08002 * 119.99959 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0011 6 6 4.2717 0.0001 0.0016 7 6 5.7787 0.0001 0.0016 8 6 6.2810 0.0014 1.4225 9 8 5.4928 0.0017 2.3443 10 7 7.6060 -0.0040 1.6688 11 6 8.0943 -0.0089 3.0500 12 1 7.4196 -0.5973 3.6718 13 6 8.1510 1.4267 3.5760 14 6 9.4736 -0.6144 3.0931 15 1 9.9400 -0.9606 2.1826 16 6 10.1401 -0.7265 4.2949 17 7 9.5720 -0.3053 5.4036 18 14 11.8495 -1.4778 4.3483 19 1 12.2610 -1.8700 2.9765 20 1 12.8110 -0.4826 4.8874 21 1 11.8359 -2.6773 5.2236 22 6 3.5806 -1.1971 -0.0036 23 6 4.3341 -2.5021 -0.0087 24 6 2.1983 -1.1971 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.5163 2.8170 -1.0264 30 1 3.7445 3.2620 0.5145 31 1 5.2860 2.3721 0.5155 32 1 6.1421 0.8897 -0.5130 33 1 6.1421 -0.8902 -0.5114 34 1 8.2364 -0.0046 0.9316 35 1 7.1533 1.8648 3.5449 36 1 8.5139 1.4231 4.6039 37 1 8.8256 2.0151 2.9542 38 1 10.0410 -0.3838 6.2491 39 1 4.5154 -2.8210 1.0177 40 1 3.7453 -3.2596 -0.5259 41 1 5.2867 -2.3697 -0.5216 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179894314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -39.295235 kcal Electronic energy + Delta-G solvation = -21275.867332 eV Core-core repulsion = 18219.689594 eV Total energy + Delta-G solvation = -3056.177738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04138 -38.39360 -34.86699 -34.00892 -33.44222 -32.34201 -30.09208 -28.40647 -27.82758 -26.59032 -25.27766 -24.94601 -21.34776 -20.63483 -19.89570 -19.24477 -17.08693 -16.25458 -15.91181 -15.53279 -15.02539 -14.26153 -14.15854 -14.13921 -13.80554 -13.22088 -13.07656 -12.85512 -12.82298 -12.65448 -12.55727 -12.50306 -12.31820 -11.85750 -11.62646 -11.37442 -11.11285 -11.04314 -10.93431 -10.77241 -10.69543 -10.58036 -10.28126 -10.22890 -9.02750 -9.00696 -8.54089 -8.35042 -8.16510 -7.85825 -6.11294 -4.20495 1.51080 1.57472 3.23742 3.31512 3.34130 3.47299 3.77450 4.25102 4.47449 4.81399 4.85782 4.94893 5.09806 5.20583 5.22978 5.37982 5.46281 5.53903 5.56320 5.60476 5.61277 5.68935 5.80043 5.81715 5.85663 5.90438 6.02795 6.08321 6.36395 6.42391 6.68217 6.71062 6.84648 6.88555 6.98836 7.17820 7.22452 7.50372 7.59734 7.71882 7.94192 8.17028 8.71513 8.81210 9.19812 9.47641 10.94673 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.003926 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.433577 B = 7130.474856 C = 7440.959004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.064 4.064 5 C -0.117 4.117 6 C -0.060 4.060 7 C -0.113 4.113 8 C 0.504 3.496 9 O -0.545 6.545 10 N -0.713 5.713 11 C 0.265 3.735 12 H 0.047 0.953 13 C -0.146 4.146 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.128 4.128 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.387 0.613 35 H 0.014 0.986 36 H 0.089 0.911 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 1.203 -13.742 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.064 4.064 5 C -0.173 4.173 6 C -0.060 4.060 7 C -0.153 4.153 8 C 0.288 3.712 9 O -0.423 6.423 10 N -0.361 5.361 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.205 4.205 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.064 4.064 23 C -0.175 4.175 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.219 0.781 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.535 1.215 -12.838 17.984 hybrid contribution 1.286 -0.355 -0.161 1.344 sum -11.249 0.860 -12.999 17.212 Atomic orbital electron populations 1.20742 0.91571 1.02533 1.01830 1.19783 0.95657 0.93186 1.00190 1.20757 0.93312 0.97279 1.03248 1.19646 0.93587 0.94679 0.98538 1.20822 1.00624 0.94124 1.01735 1.19001 0.93762 0.92363 1.00889 1.20832 0.93090 1.04502 0.96830 1.20252 0.83316 0.77540 0.90094 1.90677 1.55414 1.50150 1.46040 1.46535 1.05403 1.72800 1.11363 1.18710 0.94369 0.93859 0.76761 0.93494 1.22070 0.97086 0.97472 1.03870 1.21266 1.00606 1.41129 0.94091 0.92051 1.24896 0.98253 0.95225 0.95394 1.69917 1.37714 1.45999 0.98459 0.86406 0.83722 0.78895 0.78141 1.19736 1.20895 1.20888 1.19654 0.93602 0.94724 0.98429 1.20864 0.99772 0.93917 1.02906 1.20756 0.93305 0.97292 1.03211 0.91564 0.91780 0.91787 0.86516 0.91375 0.91618 0.91188 0.88672 0.88408 0.78052 0.96724 0.89239 0.95540 0.92661 0.90651 0.91871 0.91364 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.13 -1.74 9.36 -39.58 -0.37 -2.11 16 4 C -0.06 -0.95 5.88 -104.62 -0.62 -1.57 16 5 C -0.12 -1.50 9.19 36.01 0.33 -1.17 16 6 C -0.06 -0.93 4.37 -104.63 -0.46 -1.39 16 7 C -0.11 -1.68 4.75 -29.03 -0.14 -1.82 16 8 C 0.50 10.09 7.38 -10.98 -0.08 10.01 16 9 O -0.54 -13.32 15.70 5.55 0.09 -13.24 16 10 N -0.71 -14.84 5.07 -54.93 -0.28 -15.12 16 11 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 12 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 14 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.06 -0.95 5.88 -104.62 -0.62 -1.57 16 23 C -0.12 -1.55 9.60 36.01 0.35 -1.20 16 24 C -0.13 -1.74 9.36 -39.58 -0.37 -2.11 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.07 1.01 6.37 -51.93 -0.33 0.68 16 32 H 0.10 1.20 6.70 -51.93 -0.35 0.86 16 33 H 0.10 1.25 5.94 -51.93 -0.31 0.94 16 34 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.07 0.82 5.94 -51.93 -0.31 0.52 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -31.83 342.82 -8.40 -40.23 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.53 Total: 6.66 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.45 Total: -14.90 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.35 Total: -39.58 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.83 -8.40 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179894314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.938 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds