Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38238 * 119.99499 * 2 1 4 4 C 1.38236 * 119.99529 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99706 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99979 * 359.97438 * 4 3 2 7 7 C 1.50700 * 119.99980 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.46869 * 90.00014 * 7 6 4 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52997 * 109.47288 * 275.00460 * 11 10 8 14 14 C 1.50700 * 109.47343 * 155.00212 * 11 10 8 15 15 H 1.07995 * 119.99741 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00332 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99735 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47297 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47136 * 120.00166 * 18 16 14 21 21 H 1.48499 * 109.47166 * 239.99464 * 18 16 14 22 22 C 1.38233 * 120.00375 * 0.27509 * 6 4 3 23 23 C 1.50699 * 120.00443 * 179.72682 * 22 6 4 24 24 C 1.38234 * 120.00036 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46778 * 90.00372 * 1 2 3 26 26 H 1.09003 * 109.46896 * 209.99656 * 1 2 3 27 27 H 1.08997 * 109.47071 * 329.99500 * 1 2 3 28 28 H 1.07994 * 120.00177 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46747 * 269.97707 * 5 4 3 30 30 H 1.08998 * 109.47260 * 29.97775 * 5 4 3 31 31 H 1.08997 * 109.47176 * 149.98416 * 5 4 3 32 32 H 1.09004 * 109.47210 * 330.00307 * 7 6 4 33 33 H 1.08994 * 109.47551 * 209.99960 * 7 6 4 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 35 35 H 1.09006 * 109.47495 * 60.00048 * 13 11 10 36 36 H 1.09007 * 109.47320 * 179.97438 * 13 11 10 37 37 H 1.08993 * 109.47268 * 299.99834 * 13 11 10 38 38 H 0.97002 * 120.00028 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47201 * 89.99533 * 23 22 6 40 40 H 1.08993 * 109.47314 * 210.00219 * 23 22 6 41 41 H 1.09003 * 109.46942 * 329.99775 * 23 22 6 42 42 H 1.08002 * 119.99959 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0011 6 6 4.2717 0.0001 0.0016 7 6 5.7787 0.0001 0.0016 8 6 6.2810 0.0014 1.4225 9 8 5.4928 0.0017 2.3443 10 7 7.6060 -0.0040 1.6688 11 6 8.0943 -0.0089 3.0500 12 1 7.4196 -0.5973 3.6718 13 6 8.1510 1.4267 3.5760 14 6 9.4736 -0.6144 3.0931 15 1 9.9400 -0.9606 2.1826 16 6 10.1401 -0.7265 4.2949 17 7 9.5720 -0.3053 5.4036 18 14 11.8495 -1.4778 4.3483 19 1 12.2610 -1.8700 2.9765 20 1 12.8110 -0.4826 4.8874 21 1 11.8359 -2.6773 5.2236 22 6 3.5806 -1.1971 -0.0036 23 6 4.3341 -2.5021 -0.0087 24 6 2.1983 -1.1971 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.5163 2.8170 -1.0264 30 1 3.7445 3.2620 0.5145 31 1 5.2860 2.3721 0.5155 32 1 6.1421 0.8897 -0.5130 33 1 6.1421 -0.8902 -0.5114 34 1 8.2364 -0.0046 0.9316 35 1 7.1533 1.8648 3.5449 36 1 8.5139 1.4231 4.6039 37 1 8.8256 2.0151 2.9542 38 1 10.0410 -0.3838 6.2491 39 1 4.5154 -2.8210 1.0177 40 1 3.7453 -3.2596 -0.5259 41 1 5.2867 -2.3697 -0.5216 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179894314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = -57.763709 kcal Electronic energy + Delta-G solvation = -21276.668185 eV Core-core repulsion = 18219.689594 eV Total energy + Delta-G solvation = -3056.978591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26275 -39.89688 -36.72117 -35.15476 -34.47038 -34.28800 -31.59549 -29.96428 -28.79956 -27.59747 -27.34865 -26.11545 -23.11445 -21.67125 -21.34649 -20.71347 -18.87703 -17.53292 -17.31251 -17.23854 -16.58916 -15.85634 -15.58322 -15.22144 -15.08793 -14.55989 -14.34854 -14.09839 -13.98957 -13.87067 -13.71595 -13.64146 -13.53017 -13.46620 -12.98504 -12.91501 -12.75521 -12.65950 -12.40524 -12.27566 -12.11785 -12.04174 -11.71438 -11.68163 -11.09040 -10.74216 -10.57552 -9.71428 -9.39501 -9.24524 -8.17472 -6.35164 0.44317 0.52112 1.44183 1.45061 1.57330 1.88334 2.36007 2.59202 2.97157 3.13091 3.72458 3.86906 4.00130 4.04190 4.20676 4.25156 4.41378 4.47794 4.57800 4.62753 4.70456 4.75071 4.78343 4.81085 4.81970 4.87824 4.91351 5.00863 5.03996 5.10335 5.10961 5.38570 5.40398 5.45261 5.62840 5.63695 5.70137 5.71089 5.81154 5.92529 6.10585 6.21501 6.73769 7.01986 7.33261 7.62171 8.89033 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.003926 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.433577 B = 7130.474856 C = 7440.959004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.081 4.081 5 C -0.114 4.114 6 C -0.089 4.089 7 C -0.098 4.098 8 C 0.503 3.497 9 O -0.594 6.594 10 N -0.708 5.708 11 C 0.272 3.728 12 H -0.006 1.006 13 C -0.132 4.132 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.973 3.027 19 H -0.258 1.258 20 H -0.279 1.279 21 H -0.284 1.284 22 C -0.082 4.082 23 C -0.116 4.116 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.405 0.595 35 H 0.009 0.991 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 1.085 -15.961 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.089 4.089 7 C -0.137 4.137 8 C 0.291 3.709 9 O -0.475 6.475 10 N -0.358 5.358 11 C 0.168 3.832 12 H 0.012 0.988 13 C -0.191 4.191 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.798 3.202 19 H -0.182 1.182 20 H -0.205 1.205 21 H -0.210 1.210 22 C -0.082 4.082 23 C -0.173 4.173 24 C -0.160 4.160 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.240 0.760 35 H 0.028 0.972 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.440 1.100 -15.109 19.603 hybrid contribution 1.143 -0.307 0.541 1.301 sum -11.298 0.793 -14.569 18.453 Atomic orbital electron populations 1.20796 0.89141 1.03313 1.03191 1.20236 0.97563 0.92794 0.98601 1.21083 0.93165 0.98496 1.03148 1.19986 0.94483 0.95163 0.98440 1.20834 0.99423 0.93621 1.03175 1.19195 0.93987 0.93120 1.02636 1.20766 0.93103 1.06864 0.92962 1.21127 0.82301 0.75570 0.91928 1.90651 1.56486 1.52070 1.48264 1.46291 1.06438 1.73027 1.10021 1.18291 0.93253 0.93040 0.78611 0.98802 1.21885 0.96918 0.97620 1.02691 1.21593 1.00811 1.41141 0.94754 0.90715 1.25829 1.02391 0.95552 0.94963 1.70071 1.39482 1.47080 0.99108 0.85282 0.78559 0.77739 0.78661 1.18178 1.20459 1.21038 1.19974 0.94505 0.95155 0.98555 1.20867 1.00621 0.94012 1.01755 1.21084 0.93164 0.98529 1.03180 0.89778 0.91057 0.90986 0.84593 0.88771 0.91006 0.93189 0.86049 0.86034 0.75990 0.97197 0.91675 0.93972 0.92614 0.93083 0.89454 0.90492 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.09 -2.25 5.88 -19.86 -0.12 -2.37 16 3 C -0.14 -3.64 9.36 22.27 0.21 -3.43 16 4 C -0.08 -2.31 5.88 -19.87 -0.12 -2.43 16 5 C -0.11 -2.80 9.19 71.24 0.65 -2.14 16 6 C -0.09 -2.71 4.37 -19.87 -0.09 -2.80 16 7 C -0.10 -2.80 4.75 29.10 0.14 -2.66 16 8 C 0.50 20.34 7.38 87.66 0.65 20.98 16 9 O -0.59 -30.12 15.70 -3.04 -0.05 -30.17 16 10 N -0.71 -29.53 5.07 -446.10 -2.26 -31.79 16 11 C 0.27 14.31 2.56 44.24 0.11 14.43 16 12 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 13 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 14 C -0.54 -28.99 8.73 25.60 0.22 -28.77 16 15 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.67 5.30 84.65 0.45 1.12 16 17 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 18 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.08 -2.38 5.88 -19.87 -0.12 -2.50 16 23 C -0.12 -2.96 9.60 71.24 0.68 -2.28 16 24 C -0.14 -3.71 9.36 22.27 0.21 -3.50 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 27 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 28 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 31 H 0.05 1.41 6.37 -2.39 -0.02 1.40 16 32 H 0.12 2.82 6.70 -2.38 -0.02 2.80 16 33 H 0.12 2.87 5.94 -2.39 -0.01 2.85 16 34 H 0.41 13.93 8.54 -92.71 -0.79 13.14 16 35 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.06 3.69 6.07 -2.38 -0.01 3.67 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 41 H 0.08 1.76 5.94 -2.39 -0.01 1.74 16 42 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.95 342.82 4.45 -66.50 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.22 Total: 28.08 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 4.27 Total: -23.63 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -2.02 Total: -84.91 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -70.95 4.45 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179894314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.732 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds