Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.50697 * 109.47266 * 270.21872 * 9 8 2 11 11 O 1.21285 * 120.00137 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00244 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99589 * 0.02562 * 12 10 9 14 14 C 1.46501 * 120.00097 * 179.97438 * 12 10 9 15 15 H 1.09001 * 109.46991 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.47032 * 239.99921 * 14 12 10 17 17 C 1.50703 * 109.46849 * 120.00048 * 14 12 10 18 18 H 1.07993 * 119.99895 * 0.02562 * 17 14 12 19 19 C 1.37873 * 119.99888 * 179.97438 * 17 14 12 20 20 N 1.31519 * 120.00062 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47052 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47303 * 120.00062 * 21 19 17 24 24 H 1.48501 * 109.47075 * 240.00061 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 28 28 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 30 30 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 32 32 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 33 33 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 34 34 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 35 35 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 36 36 H 1.08995 * 109.47160 * 90.00135 * 13 12 10 37 37 H 1.08998 * 109.46787 * 209.99724 * 13 12 10 38 38 H 1.08994 * 109.47160 * 329.99939 * 13 12 10 39 39 H 1.09001 * 109.47459 * 60.00361 * 16 14 12 40 40 H 1.09001 * 109.47116 * 180.02562 * 16 14 12 41 41 H 1.08994 * 109.47451 * 300.00343 * 16 14 12 42 42 H 0.96991 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1883 -2.9399 1.4096 11 8 1.5793 -2.2593 2.3342 12 7 0.5245 -4.0877 1.6513 13 6 0.0527 -4.9101 0.5345 14 6 0.2757 -4.5135 3.0308 15 1 0.6974 -3.7807 3.7189 16 6 0.9312 -5.8750 3.2704 17 6 -1.2093 -4.6231 3.2626 18 1 -1.8987 -4.3986 2.4623 19 6 -1.6877 -5.0111 4.4961 20 7 -0.8480 -5.2851 5.4706 21 14 -3.5284 -5.1477 4.7832 22 1 -4.2518 -4.7875 3.5374 23 1 -3.8674 -6.5415 5.1676 24 1 -3.9295 -4.2222 5.8731 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6581 2.1326 0.0004 29 1 4.1204 2.1326 0.0100 30 1 5.3516 0.0002 0.0096 31 1 4.5118 -2.8187 1.0287 32 1 3.7470 -3.2607 -0.5166 33 1 5.2885 -2.3708 -0.5089 34 1 0.4942 -2.3709 -0.5265 35 1 2.0358 -3.2608 -0.5225 36 1 0.8254 -5.6281 0.2601 37 1 -0.8499 -5.4437 0.8322 38 1 -0.1686 -4.2703 -0.3198 39 1 2.0053 -5.7957 3.1028 40 1 0.7458 -6.1920 4.2967 41 1 0.5093 -6.6075 2.5824 42 1 -1.1846 -5.5577 6.3385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180264914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -39.696481 kcal Electronic energy + Delta-G solvation = -21780.755145 eV Core-core repulsion = 18724.560008 eV Total energy + Delta-G solvation = -3056.195137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29284 -39.88762 -37.07795 -34.88003 -34.45556 -34.13129 -31.55335 -29.55589 -27.62816 -27.50877 -27.36928 -27.21930 -23.41294 -21.70211 -21.57222 -19.80752 -18.51970 -17.91100 -17.20942 -17.16793 -16.83590 -16.03413 -15.81409 -15.37943 -14.96616 -14.50246 -14.19062 -14.07398 -13.96281 -13.81660 -13.77099 -13.54347 -13.48545 -13.21275 -13.04288 -12.85912 -12.71617 -12.64074 -12.46762 -12.37221 -12.19518 -12.10182 -11.74342 -11.66470 -11.17350 -10.68917 -10.47914 -9.43605 -9.38572 -9.28400 -8.14359 -6.30926 0.47548 0.52365 1.40250 1.42057 1.53285 1.86875 2.33756 2.51281 2.91684 3.13635 3.71768 3.90880 3.96961 4.08274 4.14395 4.23074 4.38561 4.46169 4.54718 4.59253 4.74224 4.75871 4.78127 4.81807 4.82938 4.83403 4.90302 4.98514 5.02380 5.05641 5.09173 5.30712 5.37865 5.48755 5.61710 5.62573 5.68459 5.68970 5.80841 6.05945 6.17615 6.20861 6.78015 6.88321 7.34395 7.54042 8.90220 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.004820 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.383611 B = 5807.940265 C = 6243.684329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.139 4.139 6 C -0.087 4.087 7 C -0.115 4.115 8 C -0.084 4.084 9 C -0.094 4.094 10 C 0.501 3.499 11 O -0.598 6.598 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.262 3.738 15 H 0.004 0.996 16 C -0.130 4.130 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.287 1.287 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 6.429 -16.534 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.157 4.157 6 C -0.087 4.087 7 C -0.171 4.171 8 C -0.084 4.084 9 C -0.133 4.133 10 C 0.290 3.710 11 O -0.479 6.479 12 N -0.334 5.334 13 C -0.065 4.065 14 C 0.160 3.840 15 H 0.022 0.978 16 C -0.189 4.189 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.213 1.213 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.010 6.677 -15.877 18.242 hybrid contribution -0.874 -0.178 0.998 1.338 sum 5.136 6.500 -14.879 17.030 Atomic orbital electron populations 1.20826 0.90831 1.02352 1.03086 1.20007 0.96704 0.93107 0.98913 1.21238 0.94927 0.97551 1.02052 1.21406 0.94264 0.98784 0.99373 1.21253 1.00653 0.91826 1.01936 1.20015 0.93124 0.96697 0.98874 1.20862 1.00644 0.93884 1.01746 1.19262 0.93483 0.93778 1.01921 1.20771 1.02979 0.96475 0.93047 1.21117 0.77508 0.80450 0.91911 1.90637 1.53930 1.55259 1.48108 1.48255 1.54254 1.22220 1.08695 1.21878 1.00517 0.95767 0.88344 1.18489 0.94780 0.92273 0.78467 0.97755 1.21852 0.96021 0.98228 1.02808 1.21617 0.91939 1.46086 0.97736 0.91968 1.25755 1.02558 0.94717 0.95574 1.70039 1.35850 1.46621 1.03330 0.85406 0.79643 0.77773 0.78185 1.18703 1.19970 1.21307 0.88724 0.93651 0.91092 0.84445 0.83667 0.84233 0.93066 0.90563 0.89282 0.86484 0.85882 0.91520 0.91290 0.89137 0.96315 0.91599 0.93377 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 9.19 71.24 0.65 -2.37 16 2 C -0.09 -2.58 5.88 -19.87 -0.12 -2.69 16 3 C -0.14 -3.62 9.70 22.27 0.22 -3.40 16 4 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.14 -3.51 9.70 22.27 0.22 -3.29 16 6 C -0.09 -2.50 5.88 -19.86 -0.12 -2.61 16 7 C -0.12 -2.81 9.61 71.24 0.68 -2.12 16 8 C -0.08 -2.60 4.37 -19.87 -0.09 -2.68 16 9 C -0.09 -2.76 3.29 29.10 0.10 -2.66 16 10 C 0.50 20.97 7.25 87.66 0.64 21.60 16 11 O -0.60 -31.43 15.36 -3.05 -0.05 -31.48 16 12 N -0.60 -25.64 2.75 -826.80 -2.28 -27.92 16 13 C 0.08 2.38 9.24 127.77 1.18 3.56 16 14 C 0.26 13.88 2.64 44.25 0.12 14.00 16 15 H 0.00 0.29 6.90 -2.39 -0.02 0.27 16 16 C -0.13 -6.40 8.97 71.98 0.65 -5.76 16 17 C -0.54 -29.32 7.99 25.60 0.20 -29.12 16 18 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 19 C 0.01 0.73 5.30 84.65 0.45 1.18 16 20 N -0.92 -53.79 11.32 21.45 0.24 -53.54 16 21 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.42 6.37 -2.39 -0.02 1.40 16 27 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 28 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.66 5.95 -2.39 -0.01 1.64 16 33 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.12 2.91 5.98 -2.39 -0.01 2.89 16 35 H 0.12 2.90 5.91 -2.39 -0.01 2.89 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.30 7.02 -2.39 -0.02 2.29 16 38 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 41 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -72.98 336.20 5.95 -67.03 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.00 Total: 19.59 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 5.00 Total: -19.03 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.03 Total: -81.46 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.48 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.98 5.95 -67.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180264914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.336 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds