Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.50697 * 109.47266 * 270.21872 * 9 8 2 11 11 O 1.21285 * 120.00137 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00244 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00097 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46850 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47158 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47422 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00150 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00223 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00186 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99985 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46806 * 89.99839 * 20 18 16 22 22 H 1.48496 * 109.47209 * 209.99647 * 20 18 16 23 23 H 1.48496 * 109.47023 * 330.00251 * 20 18 16 24 24 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 27 27 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 31 31 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 32 32 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 33 33 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 34 34 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 35 35 H 0.96996 * 119.99735 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47290 * 299.99696 * 13 12 10 37 37 H 1.09000 * 109.46876 * 60.00094 * 13 12 10 38 38 H 1.09005 * 109.47199 * 299.99727 * 14 13 12 39 39 H 1.09000 * 109.47390 * 60.00304 * 14 13 12 40 40 H 1.08997 * 109.47510 * 300.00272 * 15 14 13 41 41 H 1.09005 * 109.47229 * 59.99686 * 15 14 13 42 42 H 0.96999 * 119.99595 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1883 -2.9399 1.4096 11 8 1.5793 -2.2593 2.3342 12 7 0.5245 -4.0877 1.6513 13 6 0.2757 -4.5135 3.0308 14 6 -0.4893 -5.8384 3.0255 15 6 -0.7497 -6.2828 4.4662 16 6 -1.5037 -7.5875 4.4610 17 1 -1.7703 -8.0535 3.5237 18 6 -1.8525 -8.1870 5.6526 19 7 -2.5110 -9.3254 5.6480 20 14 -1.3909 -7.3815 7.2736 21 1 -2.4811 -6.4679 7.7004 22 1 -1.1896 -8.4286 8.3071 23 1 -0.1353 -6.6075 7.1018 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1326 0.0004 28 1 4.1204 2.1326 0.0100 29 1 5.3516 0.0002 0.0096 30 1 4.5118 -2.8187 1.0287 31 1 3.7470 -3.2607 -0.5166 32 1 5.2885 -2.3708 -0.5089 33 1 0.4942 -2.3709 -0.5265 34 1 2.0358 -3.2608 -0.5225 35 1 0.2121 -4.6322 0.9119 36 1 1.2264 -4.6454 3.5474 37 1 -0.3146 -3.7546 3.5444 38 1 -1.4400 -5.7070 2.5088 39 1 0.1015 -6.5971 2.5121 40 1 0.2008 -6.4141 4.9834 41 1 -1.3406 -5.5241 4.9793 42 1 -2.7561 -9.7473 6.4864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180395170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = -61.700045 kcal Electronic energy + Delta-G solvation = -20468.849440 eV Core-core repulsion = 17411.700156 eV Total energy + Delta-G solvation = -3057.149283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31178 -39.88426 -36.97585 -35.12932 -34.47312 -34.30528 -33.23312 -30.20709 -28.80720 -27.52195 -27.32191 -24.61436 -22.33286 -22.19610 -21.59234 -20.90072 -18.97963 -17.95293 -17.32432 -17.29449 -16.62024 -16.46436 -16.13568 -15.38285 -15.32711 -15.08300 -14.78780 -14.28162 -14.06557 -13.89259 -13.80624 -13.79249 -13.71862 -13.53972 -13.18760 -12.73994 -12.69991 -12.50240 -12.38708 -11.94683 -11.80470 -11.76687 -11.68400 -11.59744 -11.33494 -10.91014 -10.76780 -10.06306 -9.48220 -9.40660 -8.30066 -6.33771 0.43706 0.50064 1.35977 1.37731 1.49397 1.67295 2.26427 2.35588 2.88654 3.05731 3.66761 3.89465 3.97478 4.05670 4.12474 4.18366 4.18550 4.24124 4.42942 4.47828 4.50560 4.57872 4.75529 4.79815 4.81834 4.82890 4.88620 4.92435 4.98338 5.01435 5.03812 5.30001 5.35692 5.40952 5.51650 5.55425 5.61280 5.64681 5.66341 5.76706 6.17742 6.26974 6.61764 6.74532 7.30276 7.31314 8.86332 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.002953 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.403510 B = 9479.228387 C = 9572.842757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.118 4.118 8 C -0.086 4.086 9 C -0.101 4.101 10 C 0.511 3.489 11 O -0.580 6.580 12 N -0.719 5.719 13 C 0.128 3.872 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 20.270 -16.513 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.086 4.086 7 C -0.174 4.174 8 C -0.087 4.087 9 C -0.140 4.140 10 C 0.299 3.701 11 O -0.460 6.460 12 N -0.371 5.371 13 C 0.004 3.996 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.173 1.173 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.936 20.609 -15.744 28.549 hybrid contribution -0.277 -0.450 0.795 0.954 sum 11.659 20.159 -14.949 27.673 Atomic orbital electron populations 1.20850 0.90389 1.02759 1.03192 1.20028 0.96903 0.92915 0.98658 1.21250 0.94785 0.97824 1.02054 1.21405 0.94461 0.98727 0.99294 1.21253 1.00602 0.92026 1.02041 1.20023 0.93322 0.96506 0.98700 1.20891 1.00584 0.93860 1.02049 1.19217 0.93236 0.93868 1.02350 1.20792 1.03770 0.96505 0.92965 1.21064 0.76789 0.80172 0.92066 1.90704 1.52433 1.55137 1.47702 1.46013 1.57887 1.24044 1.09184 1.21250 0.99317 0.95992 0.83064 1.21475 0.99685 0.94552 0.98020 1.19469 0.96073 0.94694 0.94826 1.21467 1.35545 1.06487 0.93296 0.94283 1.25971 0.94556 0.95257 1.03392 1.70057 1.41458 1.19319 1.28242 0.85715 0.80145 0.78508 0.78647 1.19259 1.20980 1.17291 0.89068 0.92588 0.91093 0.84622 0.84115 0.84635 0.92456 0.90218 0.89884 0.85650 0.85430 0.74755 0.92849 0.92777 0.91591 0.91596 0.96259 0.96373 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.19 71.24 0.65 -1.35 16 2 C -0.08 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.14 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 5 C -0.14 -2.78 9.70 22.27 0.22 -2.57 16 6 C -0.09 -1.83 5.88 -19.86 -0.12 -1.95 16 7 C -0.12 -2.04 9.61 71.24 0.68 -1.36 16 8 C -0.09 -1.90 4.37 -19.87 -0.09 -1.99 16 9 C -0.10 -1.84 4.74 29.10 0.14 -1.70 16 10 C 0.51 13.46 7.40 87.66 0.65 14.10 16 11 O -0.58 -20.88 16.03 -3.05 -0.05 -20.93 16 12 N -0.72 -17.68 5.56 -463.06 -2.57 -20.26 16 13 C 0.13 4.03 5.67 86.38 0.49 4.52 16 14 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 15 C -0.01 -0.58 4.04 29.84 0.12 -0.46 16 16 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.01 0.30 5.47 84.65 0.46 0.76 16 19 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 20 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.08 6.37 -2.39 -0.02 1.07 16 26 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.13 5.95 -2.39 -0.01 1.12 16 32 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.13 1.67 6.72 -2.39 -0.02 1.66 16 34 H 0.13 1.68 5.95 -2.39 -0.01 1.66 16 35 H 0.42 7.51 8.47 -92.71 -0.79 6.72 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.81 7.57 -2.38 -0.02 0.79 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.75 344.12 3.67 -70.08 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.16 Total: 15.34 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.94 Total: -31.63 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.27 Total: -79.24 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -73.75 3.67 -70.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180395170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.378 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds