Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09003 * 109.47417 * 305.00034 * 7 6 5 9 9 C 1.52998 * 109.47127 * 65.00023 * 7 6 5 10 10 C 1.50703 * 109.46887 * 185.00098 * 7 6 5 11 11 O 1.21276 * 120.00397 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99626 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99655 * 180.02562 * 12 10 7 14 14 H 1.09008 * 109.46969 * 324.99513 * 13 12 10 15 15 C 1.52992 * 109.47279 * 84.99552 * 13 12 10 16 16 C 1.50702 * 109.46911 * 204.99939 * 13 12 10 17 17 H 1.07994 * 120.00050 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99704 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00378 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99726 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47256 * 89.99826 * 20 18 16 22 22 H 1.48500 * 109.47035 * 210.00278 * 20 18 16 23 23 H 1.48508 * 109.46991 * 329.99617 * 20 18 16 24 24 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 5 4 26 26 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 27 27 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 28 28 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 29 29 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 31 31 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 32 32 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 33 33 H 1.09002 * 109.47282 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47593 * 299.99810 * 9 7 6 35 35 H 1.08998 * 109.47300 * 60.00058 * 9 7 6 36 36 H 0.96995 * 120.00287 * 359.97438 * 12 10 7 37 37 H 1.09008 * 109.47152 * 60.00073 * 15 13 12 38 38 H 1.08998 * 109.47313 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.47520 * 299.99804 * 15 13 12 40 40 H 0.97000 * 120.00104 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.99658 * 179.97438 * 24 5 4 42 42 H 1.07999 * 119.99990 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 0.8378 1.9952 9 6 5.8758 -1.3116 2.1361 10 6 7.7851 0.1209 1.4639 11 8 8.3922 0.2028 0.4172 12 7 8.4536 0.1395 2.6340 13 6 9.9137 0.2604 2.6416 14 1 10.3266 -0.2702 1.7835 15 6 10.3035 1.7378 2.5635 16 6 10.4606 -0.3370 3.9124 17 1 9.7880 -0.7637 4.6416 18 6 11.8198 -0.3389 4.1440 19 7 12.6389 0.1802 3.2557 20 14 12.4978 -1.0801 5.7189 21 1 12.7833 -2.5215 5.5047 22 1 13.7505 -0.3781 6.0971 23 1 11.4984 -0.9298 6.8071 24 6 3.5805 -1.1972 0.0000 25 6 2.1981 -1.1972 -0.0054 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1324 0.0104 31 1 6.1439 -0.8890 -0.5025 32 1 6.1439 0.8909 -0.4990 33 1 6.2356 -1.3139 3.1650 34 1 4.7895 -1.4012 2.1305 35 1 6.3124 -2.1524 1.5971 36 1 7.9681 0.0736 3.4711 37 1 9.8905 2.2684 3.4216 38 1 11.3897 1.8278 2.5696 39 1 9.9079 2.1699 1.6443 40 1 13.5952 0.1786 3.4185 41 1 4.1205 -2.1325 -0.0002 42 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181157956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -43.104396 kcal Electronic energy + Delta-G solvation = -20702.084989 eV Core-core repulsion = 17645.742074 eV Total energy + Delta-G solvation = -3056.342915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83911 -38.84130 -35.34720 -34.56565 -32.58299 -31.93899 -30.99604 -29.01500 -27.96525 -25.50099 -25.23678 -23.20827 -22.66055 -21.01950 -20.17912 -19.13258 -17.17276 -16.22023 -15.61923 -15.51443 -15.29876 -14.97367 -14.59902 -14.42405 -13.91734 -13.51033 -13.32850 -13.17849 -12.83390 -12.55058 -12.43490 -12.21190 -12.00446 -11.89122 -11.62498 -11.14394 -11.11098 -10.99291 -10.94794 -10.88120 -10.74187 -10.67868 -10.28518 -10.22193 -9.03787 -9.00157 -8.89024 -8.53966 -8.47377 -7.86320 -6.11120 -4.20303 1.26437 1.34216 3.24949 3.31470 3.33303 3.45994 3.65362 4.14099 4.39179 4.71362 4.72340 4.94164 4.99104 5.04541 5.10974 5.20979 5.26527 5.35438 5.37709 5.43516 5.58569 5.60846 5.73881 5.84895 5.91792 5.95582 6.05338 6.10619 6.32895 6.34566 6.38921 6.50108 6.67656 6.84570 6.96382 6.98874 7.17654 7.50028 7.59103 7.71688 7.93874 8.17047 8.71332 8.80465 9.18045 9.47601 10.94874 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.003161 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.494066 B = 8854.742755 C = 9162.094502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.076 4.076 6 C -0.062 4.062 7 C -0.106 4.106 8 H 0.090 0.910 9 C -0.144 4.144 10 C 0.505 3.495 11 O -0.557 6.557 12 N -0.708 5.708 13 C 0.264 3.736 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.111 4.111 25 C -0.121 4.121 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.026 0.974 38 H 0.089 0.911 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.420 -0.454 -3.965 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.076 4.076 6 C -0.100 4.100 7 C -0.127 4.127 8 H 0.108 0.892 9 C -0.202 4.202 10 C 0.289 3.711 11 O -0.436 6.436 12 N -0.356 5.356 13 C 0.162 3.838 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.129 4.129 25 C -0.139 4.139 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.220 0.780 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.737 -0.357 -4.728 21.272 hybrid contribution 0.237 -0.357 1.315 1.383 sum -20.500 -0.714 -3.413 20.794 Atomic orbital electron populations 1.20764 0.91515 1.02558 1.02078 1.19879 0.95862 0.93332 1.00743 1.20995 0.94178 0.97372 1.01249 1.21093 0.94040 0.97852 1.00177 1.19983 0.95895 0.93062 0.98691 1.20407 0.89461 1.04413 0.95682 1.21272 0.93798 1.00220 0.97439 0.89187 1.21832 1.01606 0.96092 1.00649 1.20398 0.88957 0.77074 0.84648 1.90643 1.69990 1.51132 1.31857 1.46524 1.10470 1.71720 1.06873 1.18724 0.73533 0.93535 0.98019 0.93452 1.22074 1.04226 0.97572 0.96672 1.21225 0.92317 1.39554 1.04023 0.92126 1.24893 0.96772 0.95109 0.96984 1.69904 1.03449 1.44212 1.34571 0.86455 0.78486 0.79187 0.83003 1.20573 1.21077 1.19855 1.21099 0.93965 0.97825 1.00025 1.21001 0.94201 0.97358 1.01332 0.91439 0.91727 0.91734 0.86353 0.86017 0.90340 0.90142 0.91992 0.91744 0.92157 0.77980 0.95528 0.89198 0.96685 0.92598 0.85963 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.10 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.08 -0.91 4.71 -104.62 -0.49 -1.41 16 6 C -0.06 -0.86 4.19 -27.88 -0.12 -0.97 16 7 C -0.11 -1.54 2.71 -91.77 -0.25 -1.79 16 8 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 9 C -0.14 -1.84 8.66 37.16 0.32 -1.52 16 10 C 0.50 10.06 7.12 -10.98 -0.08 9.98 16 11 O -0.56 -13.34 15.58 5.56 0.09 -13.26 16 12 N -0.71 -14.89 4.96 -54.93 -0.27 -15.16 16 13 C 0.26 6.79 2.56 -69.08 -0.18 6.62 16 14 H 0.05 1.41 7.58 -51.92 -0.39 1.02 16 15 C -0.15 -3.71 9.26 37.15 0.34 -3.36 16 16 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.11 -1.22 7.97 -39.58 -0.32 -1.53 16 25 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 32 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 33 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 34 H 0.06 0.72 6.27 -51.93 -0.33 0.39 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.39 7.11 7.96 -40.82 -0.32 6.78 16 37 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.22 8.04 -52.49 -0.42 0.80 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.79 345.50 -8.70 -39.49 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.77 Total: 6.15 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.57 Total: -13.67 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.36 Total: -39.65 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.79 -8.70 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181157956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.611 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds