Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09003 * 109.47417 * 305.00034 * 7 6 5 9 9 C 1.52998 * 109.47127 * 65.00023 * 7 6 5 10 10 C 1.50703 * 109.46887 * 185.00098 * 7 6 5 11 11 O 1.21276 * 120.00397 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99626 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99655 * 180.02562 * 12 10 7 14 14 H 1.09008 * 109.46969 * 324.99513 * 13 12 10 15 15 C 1.52992 * 109.47279 * 84.99552 * 13 12 10 16 16 C 1.50702 * 109.46911 * 204.99939 * 13 12 10 17 17 H 1.07994 * 120.00050 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99704 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00378 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99726 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47256 * 89.99826 * 20 18 16 22 22 H 1.48500 * 109.47035 * 210.00278 * 20 18 16 23 23 H 1.48508 * 109.46991 * 329.99617 * 20 18 16 24 24 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 5 4 26 26 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 27 27 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 28 28 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 29 29 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 31 31 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 32 32 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 33 33 H 1.09002 * 109.47282 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47593 * 299.99810 * 9 7 6 35 35 H 1.08998 * 109.47300 * 60.00058 * 9 7 6 36 36 H 0.96995 * 120.00287 * 359.97438 * 12 10 7 37 37 H 1.09008 * 109.47152 * 60.00073 * 15 13 12 38 38 H 1.08998 * 109.47313 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.47520 * 299.99804 * 15 13 12 40 40 H 0.97000 * 120.00104 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.99658 * 179.97438 * 24 5 4 42 42 H 1.07999 * 119.99990 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 0.8378 1.9952 9 6 5.8758 -1.3116 2.1361 10 6 7.7851 0.1209 1.4639 11 8 8.3922 0.2028 0.4172 12 7 8.4536 0.1395 2.6340 13 6 9.9137 0.2604 2.6416 14 1 10.3266 -0.2702 1.7835 15 6 10.3035 1.7378 2.5635 16 6 10.4606 -0.3370 3.9124 17 1 9.7880 -0.7637 4.6416 18 6 11.8198 -0.3389 4.1440 19 7 12.6389 0.1802 3.2557 20 14 12.4978 -1.0801 5.7189 21 1 12.7833 -2.5215 5.5047 22 1 13.7505 -0.3781 6.0971 23 1 11.4984 -0.9298 6.8071 24 6 3.5805 -1.1972 0.0000 25 6 2.1981 -1.1972 -0.0054 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1324 0.0104 31 1 6.1439 -0.8890 -0.5025 32 1 6.1439 0.8909 -0.4990 33 1 6.2356 -1.3139 3.1650 34 1 4.7895 -1.4012 2.1305 35 1 6.3124 -2.1524 1.5971 36 1 7.9681 0.0736 3.4711 37 1 9.8905 2.2684 3.4216 38 1 11.3897 1.8278 2.5696 39 1 9.9079 2.1699 1.6443 40 1 13.5952 0.1786 3.4185 41 1 4.1205 -2.1325 -0.0002 42 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181157956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -60.153601 kcal Electronic energy + Delta-G solvation = -20702.824298 eV Core-core repulsion = 17645.742074 eV Total energy + Delta-G solvation = -3057.082224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03783 -40.10876 -36.90401 -36.07269 -34.35618 -33.08261 -31.77615 -30.75582 -29.01325 -27.35535 -26.43335 -24.52552 -23.51018 -22.45029 -21.42491 -20.75855 -18.86354 -17.66193 -17.19796 -16.68614 -16.51276 -16.19085 -15.85204 -15.82127 -15.01353 -14.69241 -14.51874 -14.37258 -14.19836 -13.89514 -13.64122 -13.40083 -13.15926 -12.96525 -12.91879 -12.84730 -12.79553 -12.68362 -12.27601 -12.13983 -12.06333 -11.98334 -11.82627 -11.69302 -11.11679 -10.66364 -10.52003 -9.75964 -9.73307 -9.31831 -8.17969 -6.35707 0.45366 0.55485 1.44537 1.45089 1.55948 1.84083 2.35329 2.61997 2.90770 3.12330 3.76106 3.88303 3.95427 4.09841 4.12059 4.21706 4.26763 4.45362 4.50642 4.66324 4.74041 4.78699 4.86245 4.88900 4.91297 4.91483 4.95474 5.03698 5.09157 5.20091 5.24539 5.30292 5.36208 5.43514 5.57693 5.61710 5.68964 5.76302 5.80572 5.90698 6.09728 6.18764 6.72551 6.98104 7.32143 7.57422 8.88433 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.003161 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.494066 B = 8854.742755 C = 9162.094502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.090 4.090 6 C -0.054 4.054 7 C -0.091 4.091 8 H 0.111 0.889 9 C -0.138 4.138 10 C 0.500 3.500 11 O -0.602 6.602 12 N -0.704 5.704 13 C 0.270 3.730 14 H -0.004 1.004 15 C -0.134 4.134 16 C -0.546 4.546 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.118 4.118 25 C -0.126 4.126 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.404 0.596 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.011 0.989 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.089 -0.992 -2.334 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.092 4.092 7 C -0.113 4.113 8 H 0.129 0.871 9 C -0.196 4.196 10 C 0.287 3.713 11 O -0.484 6.484 12 N -0.353 5.353 13 C 0.166 3.834 14 H 0.014 0.986 15 C -0.193 4.193 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.136 4.136 25 C -0.143 4.143 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.239 0.761 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.453 -0.897 -3.077 23.671 hybrid contribution 1.013 -0.176 0.720 1.255 sum -22.440 -1.074 -2.357 22.589 Atomic orbital electron populations 1.20819 0.89495 1.03582 1.02934 1.20267 0.97441 0.93011 0.99258 1.21257 0.93750 0.98576 1.00807 1.21223 0.94854 0.97698 1.00480 1.19791 0.94356 0.94037 1.00832 1.20262 0.91225 1.02967 0.94774 1.21234 0.89123 1.02210 0.98686 0.87140 1.21816 1.02982 0.94349 1.00423 1.21374 0.91217 0.75285 0.83374 1.90620 1.71566 1.52834 1.33405 1.46295 1.08762 1.71972 1.08254 1.18330 0.76154 0.92973 0.95950 0.98591 1.21900 1.02679 0.97635 0.97056 1.21548 0.92915 1.39651 1.04301 0.90831 1.25828 0.97140 0.95397 1.00352 1.70058 1.03736 1.45300 1.36605 0.85329 0.77863 0.78039 0.79008 1.20351 1.20948 1.18283 1.21221 0.94693 0.97609 1.00068 1.21281 0.93818 0.98521 1.00722 0.90556 0.90685 0.90815 0.84511 0.85810 0.91636 0.91861 0.91412 0.89489 0.92973 0.76092 0.94045 0.91518 0.97004 0.92555 0.85426 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.49 16 2 C -0.10 -1.66 5.88 -19.87 -0.12 -1.77 16 3 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 4 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 5 C -0.09 -2.08 4.71 -19.86 -0.09 -2.17 16 6 C -0.05 -1.52 4.19 29.85 0.12 -1.39 16 7 C -0.09 -2.60 2.71 -11.54 -0.03 -2.63 16 8 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 9 C -0.14 -3.29 8.66 71.98 0.62 -2.67 16 10 C 0.50 20.29 7.12 87.66 0.62 20.91 16 11 O -0.60 -30.15 15.58 -3.02 -0.05 -30.20 16 12 N -0.70 -29.75 4.96 -446.08 -2.21 -31.96 16 13 C 0.27 14.26 2.56 44.24 0.11 14.37 16 14 H 0.00 -0.24 7.58 -2.38 -0.02 -0.26 16 15 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 16 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 18 C 0.01 0.69 5.30 84.65 0.45 1.14 16 19 N -0.92 -53.34 11.32 21.45 0.24 -53.09 16 20 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 C -0.12 -2.39 7.97 22.27 0.18 -2.22 16 25 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 29 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 32 H 0.06 1.95 7.90 -2.39 -0.02 1.93 16 33 H 0.07 1.54 7.56 -2.39 -0.02 1.52 16 34 H 0.09 1.72 6.27 -2.39 -0.01 1.70 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.40 14.37 7.96 -92.71 -0.74 13.63 16 37 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.13 2.37 8.04 -2.91 -0.02 2.35 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -67.96 345.50 4.39 -63.57 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.26 Total: 26.06 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.12 Total: -18.59 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.97 Total: -85.05 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -67.96 4.39 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181157956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.415 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds