Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46845 * 90.00215 * 6 5 4 8 8 H 1.09006 * 109.46930 * 55.00196 * 7 6 5 9 9 C 1.53001 * 109.46940 * 295.00060 * 7 6 5 10 10 C 1.50698 * 109.46752 * 175.00013 * 7 6 5 11 11 O 1.21283 * 120.00445 * 0.02562 * 10 7 6 12 12 N 1.34781 * 119.99641 * 179.97438 * 10 7 6 13 13 C 1.46498 * 119.99776 * 180.02562 * 12 10 7 14 14 H 1.09005 * 109.47509 * 325.00300 * 13 12 10 15 15 C 1.52994 * 109.47050 * 85.00623 * 13 12 10 16 16 C 1.50705 * 109.47181 * 205.00497 * 13 12 10 17 17 H 1.08002 * 119.99807 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00177 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99882 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00085 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47457 * 89.99740 * 20 18 16 22 22 H 1.48508 * 109.46727 * 209.99713 * 20 18 16 23 23 H 1.48495 * 109.46862 * 329.99147 * 20 18 16 24 24 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 5 4 26 26 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 27 27 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 28 28 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 29 29 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 31 31 H 1.08998 * 109.47268 * 210.00355 * 6 5 4 32 32 H 1.08998 * 109.47151 * 330.00502 * 6 5 4 33 33 H 1.08999 * 109.47095 * 60.00418 * 9 7 6 34 34 H 1.09001 * 109.46853 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47093 * 299.99811 * 9 7 6 36 36 H 0.96994 * 120.00168 * 0.02562 * 12 10 7 37 37 H 1.09005 * 109.47007 * 299.99493 * 15 13 12 38 38 H 1.09002 * 109.47505 * 59.99948 * 15 13 12 39 39 H 1.09009 * 109.47345 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00114 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.00087 * 180.02562 * 24 5 4 42 42 H 1.07999 * 120.00181 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 6.2898 0.0003 1.4404 8 1 5.8555 -0.8413 1.9801 9 6 5.8856 1.3080 2.1242 10 6 7.7916 -0.1236 1.4411 11 8 8.3940 -0.2039 0.3915 12 7 8.4656 -0.1441 2.6082 13 6 9.9256 -0.2640 2.6088 14 1 10.2379 -0.9059 1.7850 15 6 10.5512 1.1220 2.4408 16 6 10.3797 -0.8652 3.9140 17 1 9.6533 -1.1318 4.6675 18 6 11.7225 -1.0750 4.1463 19 7 12.6070 -0.7509 3.2286 20 14 12.2852 -1.8209 5.7638 21 1 12.3300 -3.2998 5.6380 22 1 13.6392 -1.3114 6.0993 23 1 11.3340 -1.4442 6.8400 24 6 3.5804 -1.1973 -0.0006 25 6 2.1981 -1.1973 -0.0001 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1323 -0.0053 31 1 6.1416 -0.8904 -0.5155 32 1 6.1417 0.8895 -0.5161 33 1 4.7993 1.3976 2.1237 34 1 6.2500 1.3086 3.1515 35 1 6.3199 2.1495 1.5845 36 1 7.9839 -0.0795 3.4476 37 1 10.2228 1.5568 1.4967 38 1 10.2390 1.7639 3.2646 39 1 11.6377 1.0329 2.4418 40 1 13.5517 -0.8989 3.3918 41 1 4.1204 -2.1326 -0.0002 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181157975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -43.096377 kcal Electronic energy + Delta-G solvation = -20704.347691 eV Core-core repulsion = 17648.005123 eV Total energy + Delta-G solvation = -3056.342568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.83920 -38.84160 -35.34583 -34.56729 -32.58435 -31.93760 -30.99558 -29.00737 -27.98999 -25.49309 -25.23969 -23.19607 -22.65842 -21.03056 -20.20831 -19.10870 -17.14912 -16.25263 -15.63111 -15.51996 -15.26897 -14.99191 -14.56398 -14.43093 -13.92607 -13.54978 -13.36211 -13.16624 -12.76154 -12.52547 -12.40670 -12.33741 -11.93861 -11.92684 -11.63294 -11.16370 -11.08378 -10.96184 -10.95564 -10.92826 -10.78203 -10.62940 -10.28928 -10.22021 -9.03698 -9.00089 -8.88967 -8.53907 -8.47381 -7.86359 -6.11131 -4.20369 1.26494 1.34278 3.24988 3.31517 3.33422 3.45980 3.65399 4.13907 4.39357 4.71405 4.72407 4.94192 4.99105 5.04364 5.10497 5.20850 5.26075 5.35191 5.37345 5.43501 5.58365 5.60921 5.73568 5.84588 5.90838 5.94299 6.05095 6.10246 6.30878 6.34475 6.38847 6.50193 6.67670 6.84766 6.96446 6.99117 7.17791 7.50076 7.59131 7.71703 7.93916 8.17137 8.71331 8.80410 9.18053 9.47568 10.94833 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036846 B = 0.003159 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.741097 B = 8862.205664 C = 9103.435583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.076 4.076 6 C -0.062 4.062 7 C -0.106 4.106 8 H 0.091 0.909 9 C -0.144 4.144 10 C 0.505 3.495 11 O -0.557 6.557 12 N -0.708 5.708 13 C 0.264 3.736 14 H 0.048 0.952 15 C -0.146 4.146 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.113 4.113 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.244 2.838 -3.952 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.076 4.076 6 C -0.100 4.100 7 C -0.128 4.128 8 H 0.109 0.891 9 C -0.201 4.201 10 C 0.289 3.711 11 O -0.436 6.436 12 N -0.356 5.356 13 C 0.162 3.838 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.131 4.131 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.220 0.780 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.561 2.779 -4.720 21.279 hybrid contribution 0.181 -0.382 1.336 1.402 sum -20.380 2.398 -3.384 20.798 Atomic orbital electron populations 1.20765 0.91516 1.02558 1.02077 1.19880 0.95862 0.93333 1.00741 1.20995 0.94196 0.97349 1.01365 1.21091 0.93961 0.97799 1.00089 1.19984 0.95893 0.93062 0.98702 1.20407 0.89441 1.04409 0.95697 1.21273 0.93808 1.00222 0.97464 0.89111 1.21829 1.01678 0.96093 1.00536 1.20395 0.88907 0.77086 0.84682 1.90644 1.70342 1.51098 1.31544 1.46522 1.10446 1.71732 1.06881 1.18723 0.73245 0.93985 0.97863 0.93465 1.22069 1.04428 0.97416 0.96572 1.21232 0.92485 1.42276 1.01169 0.92128 1.24894 0.96472 0.95283 0.97105 1.69908 1.01818 1.46826 1.33582 0.86452 0.78049 0.79351 0.83264 1.20570 1.21074 1.19855 1.21103 0.94043 0.97878 1.00107 1.21001 0.94183 0.97379 1.01217 0.91436 0.91729 0.91735 0.86364 0.85994 0.90103 0.90383 0.91697 0.92059 0.92233 0.77980 0.96687 0.95533 0.89211 0.92599 0.85980 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.10 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.11 -1.21 7.96 -39.58 -0.32 -1.53 16 5 C -0.08 -0.92 4.71 -104.62 -0.49 -1.41 16 6 C -0.06 -0.86 4.19 -27.88 -0.12 -0.97 16 7 C -0.11 -1.55 2.71 -91.77 -0.25 -1.80 16 8 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 9 C -0.14 -1.80 8.66 37.16 0.32 -1.48 16 10 C 0.50 10.06 7.12 -10.98 -0.08 9.99 16 11 O -0.56 -13.34 15.58 5.56 0.09 -13.26 16 12 N -0.71 -14.89 4.96 -54.93 -0.27 -15.16 16 13 C 0.26 6.79 2.56 -69.08 -0.18 6.62 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.69 9.26 37.15 0.34 -3.34 16 16 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 25 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 31 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 32 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.06 0.71 6.27 -51.93 -0.33 0.39 16 34 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 7.11 7.96 -40.82 -0.32 6.79 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.45 6.07 -51.92 -0.32 2.14 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.81 345.50 -8.70 -39.52 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.77 Total: 6.11 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.57 Total: -13.65 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.35 Total: -39.66 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.81 -8.70 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181157975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.579 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds