Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46845 * 90.00215 * 6 5 4 8 8 H 1.09006 * 109.46930 * 55.00196 * 7 6 5 9 9 C 1.53001 * 109.46940 * 295.00060 * 7 6 5 10 10 C 1.50698 * 109.46752 * 175.00013 * 7 6 5 11 11 O 1.21283 * 120.00445 * 0.02562 * 10 7 6 12 12 N 1.34781 * 119.99641 * 179.97438 * 10 7 6 13 13 C 1.46498 * 119.99776 * 180.02562 * 12 10 7 14 14 H 1.09005 * 109.47509 * 325.00300 * 13 12 10 15 15 C 1.52994 * 109.47050 * 85.00623 * 13 12 10 16 16 C 1.50705 * 109.47181 * 205.00497 * 13 12 10 17 17 H 1.08002 * 119.99807 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00177 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99882 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00085 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47457 * 89.99740 * 20 18 16 22 22 H 1.48508 * 109.46727 * 209.99713 * 20 18 16 23 23 H 1.48495 * 109.46862 * 329.99147 * 20 18 16 24 24 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 5 4 26 26 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 27 27 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 28 28 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 29 29 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 31 31 H 1.08998 * 109.47268 * 210.00355 * 6 5 4 32 32 H 1.08998 * 109.47151 * 330.00502 * 6 5 4 33 33 H 1.08999 * 109.47095 * 60.00418 * 9 7 6 34 34 H 1.09001 * 109.46853 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47093 * 299.99811 * 9 7 6 36 36 H 0.96994 * 120.00168 * 0.02562 * 12 10 7 37 37 H 1.09005 * 109.47007 * 299.99493 * 15 13 12 38 38 H 1.09002 * 109.47505 * 59.99948 * 15 13 12 39 39 H 1.09009 * 109.47345 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00114 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.00087 * 180.02562 * 24 5 4 42 42 H 1.07999 * 120.00181 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 6.2898 0.0003 1.4404 8 1 5.8555 -0.8413 1.9801 9 6 5.8856 1.3080 2.1242 10 6 7.7916 -0.1236 1.4411 11 8 8.3940 -0.2039 0.3915 12 7 8.4656 -0.1441 2.6082 13 6 9.9256 -0.2640 2.6088 14 1 10.2379 -0.9059 1.7850 15 6 10.5512 1.1220 2.4408 16 6 10.3797 -0.8652 3.9140 17 1 9.6533 -1.1318 4.6675 18 6 11.7225 -1.0750 4.1463 19 7 12.6070 -0.7509 3.2286 20 14 12.2852 -1.8209 5.7638 21 1 12.3300 -3.2998 5.6380 22 1 13.6392 -1.3114 6.0993 23 1 11.3340 -1.4442 6.8400 24 6 3.5804 -1.1973 -0.0006 25 6 2.1981 -1.1973 -0.0001 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1323 -0.0053 31 1 6.1416 -0.8904 -0.5155 32 1 6.1417 0.8895 -0.5161 33 1 4.7993 1.3976 2.1237 34 1 6.2500 1.3086 3.1515 35 1 6.3199 2.1495 1.5845 36 1 7.9839 -0.0795 3.4476 37 1 10.2228 1.5568 1.4967 38 1 10.2390 1.7639 3.2646 39 1 11.6377 1.0329 2.4418 40 1 13.5517 -0.8989 3.3918 41 1 4.1204 -2.1326 -0.0002 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181157975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -60.176424 kcal Electronic energy + Delta-G solvation = -20705.088337 eV Core-core repulsion = 17648.005123 eV Total energy + Delta-G solvation = -3057.083214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03840 -40.10913 -36.90223 -36.07318 -34.35826 -33.07828 -31.77711 -30.75688 -29.02573 -27.34757 -26.42683 -24.50926 -23.51099 -22.48148 -21.42985 -20.74399 -18.83631 -17.71691 -17.19022 -16.64191 -16.52961 -16.14334 -15.90991 -15.84470 -14.99908 -14.69879 -14.49504 -14.35385 -14.21734 -13.89507 -13.65417 -13.39735 -13.15085 -12.97391 -12.90498 -12.85246 -12.74626 -12.73987 -12.27199 -12.13490 -12.06245 -11.98655 -11.82766 -11.69427 -11.11491 -10.66767 -10.51663 -9.75884 -9.73608 -9.31922 -8.18186 -6.36030 0.45288 0.55377 1.44413 1.44967 1.55883 1.84135 2.35076 2.62057 2.90696 3.12042 3.76066 3.88432 3.95334 4.09683 4.12149 4.21607 4.26735 4.45174 4.50912 4.66238 4.74426 4.79157 4.85937 4.88820 4.91566 4.92019 4.95490 5.03564 5.09579 5.20146 5.24480 5.30090 5.36136 5.43649 5.57603 5.61535 5.69071 5.76216 5.80492 5.90702 6.09789 6.18685 6.72245 6.98056 7.31904 7.57344 8.88174 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036846 B = 0.003159 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.741097 B = 8862.205664 C = 9103.435583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.090 4.090 6 C -0.054 4.054 7 C -0.092 4.092 8 H 0.108 0.892 9 C -0.138 4.138 10 C 0.500 3.500 11 O -0.602 6.602 12 N -0.704 5.704 13 C 0.269 3.731 14 H -0.004 1.004 15 C -0.133 4.133 16 C -0.547 4.547 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.125 4.125 25 C -0.126 4.126 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.404 0.596 37 H 0.011 0.989 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.921 3.080 -2.295 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.090 4.090 6 C -0.092 4.092 7 C -0.113 4.113 8 H 0.126 0.874 9 C -0.195 4.195 10 C 0.288 3.712 11 O -0.484 6.484 12 N -0.353 5.353 13 C 0.166 3.834 14 H 0.014 0.986 15 C -0.191 4.191 16 C -0.585 4.585 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.143 4.143 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.284 3.029 -3.044 23.677 hybrid contribution 0.961 -0.465 0.733 1.295 sum -22.323 2.564 -2.311 22.588 Atomic orbital electron populations 1.20819 0.89491 1.03583 1.02935 1.20268 0.97444 0.93010 0.99260 1.21284 0.93829 0.98504 1.00682 1.21222 0.94675 0.97589 1.00018 1.19793 0.94363 0.94036 1.00830 1.20263 0.91198 1.02963 0.94796 1.21235 0.89110 1.02273 0.98702 0.87387 1.21814 1.03031 0.94262 1.00390 1.21372 0.91173 0.75290 0.83408 1.90622 1.71909 1.52797 1.33106 1.46293 1.08757 1.71970 1.08259 1.18330 0.76015 0.93127 0.95945 0.98636 1.21887 1.02834 0.97508 0.96913 1.21557 0.93082 1.42387 1.01498 0.90871 1.25827 0.96600 0.95577 1.00689 1.70060 1.02140 1.47784 1.35690 0.85325 0.77666 0.78213 0.79016 1.20376 1.20907 1.18287 1.21224 0.94875 0.97715 1.00535 1.21255 0.93738 0.98593 1.00846 0.90553 0.90863 0.90637 0.84229 0.85283 0.92031 0.91465 0.89520 0.91359 0.92750 0.76094 0.97009 0.94017 0.91555 0.92544 0.85957 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.49 16 2 C -0.10 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -2.35 7.96 22.27 0.18 -2.17 16 5 C -0.09 -2.08 4.71 -19.86 -0.09 -2.18 16 6 C -0.05 -1.52 4.19 29.85 0.13 -1.39 16 7 C -0.09 -2.62 2.71 -11.54 -0.03 -2.66 16 8 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 9 C -0.14 -3.18 8.66 71.98 0.62 -2.56 16 10 C 0.50 20.30 7.12 87.66 0.62 20.93 16 11 O -0.60 -30.17 15.58 -3.04 -0.05 -30.21 16 12 N -0.70 -29.77 4.96 -446.09 -2.21 -31.98 16 13 C 0.27 14.26 2.56 44.25 0.11 14.37 16 14 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 15 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 16 C -0.55 -29.32 8.73 25.60 0.22 -29.09 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 18 C 0.01 0.71 5.30 84.65 0.45 1.15 16 19 N -0.92 -53.34 11.32 21.45 0.24 -53.09 16 20 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 25 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.13 2.33 8.04 -2.91 -0.02 2.30 16 31 H 0.06 1.92 7.90 -2.39 -0.02 1.90 16 32 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 33 H 0.09 1.67 6.27 -2.39 -0.01 1.65 16 34 H 0.07 1.49 7.56 -2.39 -0.02 1.47 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.40 14.38 7.96 -92.71 -0.74 13.64 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 3.74 6.07 -2.38 -0.01 3.73 16 40 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -68.05 345.50 4.39 -63.66 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.26 Total: 25.93 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 4.12 Total: -18.56 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.97 Total: -85.08 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.05 4.39 -63.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181157975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.483 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds