Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53773 * 113.61406 * 2 1 4 4 C 1.53779 * 87.08301 * 89.11782 * 3 2 1 5 5 N 1.46504 * 113.61601 * 139.98025 * 4 3 2 6 6 C 1.39672 * 119.99575 * 156.52893 * 5 4 3 7 7 C 1.38970 * 120.05126 * 0.02562 * 6 5 4 8 8 C 1.38105 * 120.03860 * 179.97438 * 7 6 5 9 9 C 1.38226 * 120.12633 * 359.74694 * 8 7 6 10 10 C 1.38763 * 120.09039 * 0.50784 * 9 8 7 11 11 O 1.35905 * 120.01951 * 179.76750 * 10 9 8 12 12 C 1.42901 * 116.99604 * 359.72480 * 11 10 9 13 13 C 1.52998 * 109.47046 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00175 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99988 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99802 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47100 * 90.00108 * 18 16 14 20 20 H 1.48502 * 109.47426 * 209.99898 * 18 16 14 21 21 H 1.48506 * 109.47455 * 330.00292 * 18 16 14 22 22 C 1.38618 * 119.96644 * 359.49430 * 10 9 8 23 23 C 1.53776 * 87.17302 * 25.38900 * 4 3 2 24 24 H 1.09001 * 109.46947 * 60.00093 * 1 2 3 25 25 H 1.09007 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47160 * 299.99966 * 1 2 3 27 27 H 1.09000 * 112.85109 * 228.80522 * 2 1 3 28 28 H 1.09003 * 113.61577 * 334.56720 * 3 2 1 29 29 H 1.09001 * 113.61859 * 203.66673 * 3 2 1 30 30 H 1.09005 * 113.61044 * 270.80086 * 4 3 2 31 31 H 0.96989 * 119.99987 * 336.53418 * 5 4 3 32 32 H 1.08008 * 119.98021 * 359.95603 * 7 6 5 33 33 H 1.08002 * 119.93903 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.94954 * 180.27654 * 9 8 7 35 35 H 1.08998 * 109.47043 * 300.00197 * 12 11 10 36 36 H 1.08999 * 109.47144 * 59.99795 * 12 11 10 37 37 H 1.08996 * 109.47090 * 300.00216 * 13 12 11 38 38 H 1.09007 * 109.46935 * 60.00317 * 13 12 11 39 39 H 0.97004 * 119.99745 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.06229 * 180.23539 * 22 10 9 41 41 H 1.09003 * 113.61203 * 89.15696 * 23 4 3 42 42 H 1.09002 * 113.61899 * 220.06362 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0930 1.3467 1.5356 5 7 3.2741 1.9183 2.1873 6 6 3.1899 2.3838 3.5014 7 6 1.9864 2.3048 4.1919 8 6 1.9036 2.7647 5.4915 9 6 3.0178 3.2996 6.1105 10 6 4.2207 3.3859 5.4242 11 8 5.3141 3.9164 6.0326 12 6 5.1514 4.3710 7.3776 13 6 6.4795 4.9308 7.8909 14 6 6.3078 5.4107 9.3091 15 1 5.3475 5.3246 9.7958 16 6 7.3766 5.9597 9.9853 17 7 7.2269 6.3781 11.2231 18 14 9.0373 6.1093 9.1433 19 1 9.1238 7.4187 8.4482 20 1 10.1173 6.0154 10.1582 21 1 9.1913 5.0126 8.1538 22 6 4.3082 2.9255 4.1197 23 6 2.1448 -0.1841 1.3994 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9533 -0.6616 -0.7558 28 1 1.4945 2.1704 -0.4289 29 1 3.1590 1.4427 -0.4009 30 1 1.1574 1.7163 1.9555 31 1 4.1144 1.9734 1.7061 32 1 1.1153 1.8838 3.7118 33 1 0.9676 2.7022 6.0268 34 1 2.9509 3.6543 7.1284 35 1 4.3915 5.1518 7.4078 36 1 4.8410 3.5375 8.0078 37 1 7.2390 4.1496 7.8607 38 1 6.7903 5.7642 7.2608 39 1 7.9788 6.7647 11.6986 40 1 5.2446 2.9884 3.5854 41 1 3.1576 -0.5868 1.3818 42 1 1.4923 -0.7071 2.0986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184437497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = -4.836835 kcal Electronic energy + Delta-G solvation = -20129.623383 eV Core-core repulsion = 17074.939874 eV Total energy + Delta-G solvation = -3054.683509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20449 -39.37577 -37.34101 -34.16835 -33.26960 -31.08095 -30.08851 -29.14691 -27.83842 -26.05044 -25.22366 -23.72815 -22.49461 -21.28544 -20.26688 -19.08298 -18.15038 -16.82964 -16.67789 -15.80395 -15.73711 -15.36169 -14.99712 -14.77770 -14.17373 -14.07237 -13.57911 -13.39322 -13.36243 -12.85240 -12.75198 -12.71424 -12.44302 -12.17767 -11.70217 -11.59813 -11.42197 -11.12275 -10.91431 -10.72948 -10.70066 -10.51803 -10.13710 -10.01416 -9.83384 -9.70418 -9.31523 -8.60417 -7.99515 -7.33268 -6.11483 -4.12028 1.69713 1.84208 3.24472 3.30094 3.37192 3.43029 3.96647 4.04818 4.14475 4.18476 4.40981 4.42319 4.53783 4.98762 5.05700 5.08022 5.22695 5.26062 5.30867 5.36468 5.41632 5.51092 5.52758 5.53770 5.65139 5.69733 5.76894 5.85401 5.98690 5.98763 6.01710 6.12150 6.39540 6.48235 6.61157 6.75253 6.85088 7.10568 7.26724 7.39753 7.63755 7.68473 8.01742 8.41352 8.89645 9.48973 11.01061 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.002687 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.307115 B =10418.566687 C =10863.854619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.134 3.866 5 N -0.737 5.737 6 C 0.246 3.754 7 C -0.243 4.243 8 C -0.036 4.036 9 C -0.263 4.263 10 C 0.187 3.813 11 O -0.321 6.321 12 C 0.074 3.926 13 C -0.009 4.009 14 C -0.525 4.525 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.239 4.239 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.398 0.602 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.023 0.977 39 H 0.265 0.735 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -12.377 -22.833 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.183 4.183 4 C 0.027 3.973 5 N -0.366 5.366 6 C 0.144 3.856 7 C -0.266 4.266 8 C -0.055 4.055 9 C -0.284 4.284 10 C 0.139 3.861 11 O -0.234 6.234 12 C 0.000 4.000 13 C -0.047 4.047 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.262 4.262 23 C -0.193 4.193 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.233 0.767 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.714 -12.313 -22.776 28.844 hybrid contribution 1.069 0.187 -0.265 1.117 sum -11.645 -12.126 -23.041 28.523 Atomic orbital electron populations 1.21627 0.93723 1.02010 1.02050 1.22206 0.95907 0.97254 0.98004 1.23411 1.01662 0.97412 0.95849 1.22424 0.90017 0.92789 0.92038 1.44618 1.12272 1.68145 1.11586 1.17397 0.93008 0.90878 0.84344 1.20417 0.96651 1.13018 0.96476 1.20635 0.97381 0.93872 0.93615 1.21162 0.93430 1.11739 1.02054 1.18777 0.86253 0.89828 0.91252 1.86094 1.32923 1.73728 1.30615 1.23060 1.01648 0.97790 0.77547 1.19590 0.91876 0.96480 0.96743 1.20851 0.98932 1.40975 0.95574 0.90722 1.24937 0.98964 0.94494 0.94687 1.69895 1.31929 1.41199 1.10607 0.86754 0.83621 0.79273 0.79593 1.20084 1.21206 1.18756 1.19660 0.98802 1.12887 0.94840 1.23636 1.01560 0.97517 0.96582 0.92271 0.92286 0.92365 0.90312 0.90854 0.89768 0.87657 0.76697 0.86660 0.86275 0.85454 0.92482 0.92463 0.95457 0.95892 0.92483 0.85871 0.89815 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.59 37.16 0.36 -0.36 16 2 C -0.11 -0.68 4.55 -89.72 -0.41 -1.09 16 3 C -0.15 -0.92 7.42 -25.92 -0.19 -1.12 16 4 C 0.13 1.06 3.65 -67.12 -0.24 0.82 16 5 N -0.74 -7.37 5.54 -51.40 -0.28 -7.65 16 6 C 0.25 3.23 6.65 -83.81 -0.56 2.68 16 7 C -0.24 -3.10 9.26 -39.36 -0.36 -3.47 16 8 C -0.04 -0.49 10.03 -39.63 -0.40 -0.89 16 9 C -0.26 -4.27 9.04 -39.39 -0.36 -4.62 16 10 C 0.19 3.31 6.68 -39.25 -0.26 3.04 16 11 O -0.32 -6.52 10.13 -19.44 -0.20 -6.72 16 12 C 0.07 1.56 4.68 37.16 0.17 1.74 16 13 C -0.01 -0.23 4.41 -27.88 -0.12 -0.36 16 14 C -0.53 -14.98 9.66 -34.44 -0.33 -15.32 16 15 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.24 -3.68 9.83 -39.24 -0.39 -4.06 16 23 C -0.15 -1.11 7.45 -25.83 -0.19 -1.31 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.31 7.34 -51.93 -0.38 -0.07 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.11 0.86 5.72 -51.93 -0.30 0.56 16 31 H 0.40 3.50 8.72 -40.82 -0.36 3.14 16 32 H 0.12 1.21 6.08 -52.48 -0.32 0.89 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 35 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 36 H 0.06 1.18 7.65 -51.93 -0.40 0.78 16 37 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 38 H 0.02 0.56 7.57 -51.92 -0.39 0.17 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -30.93 339.75 -9.27 -40.21 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.63 Total: 0.95 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -3.38 Total: -22.33 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.49 Total: -34.37 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.20 Total: -6.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.93 -9.27 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184437497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.370 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds