Wall clock time and date at job start Mon Mar 30 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53773 * 113.61406 * 2 1 4 4 C 1.53779 * 87.08301 * 89.11782 * 3 2 1 5 5 N 1.46504 * 113.61601 * 139.98025 * 4 3 2 6 6 C 1.39672 * 119.99575 * 156.52893 * 5 4 3 7 7 C 1.38970 * 120.05126 * 0.02562 * 6 5 4 8 8 C 1.38105 * 120.03860 * 179.97438 * 7 6 5 9 9 C 1.38226 * 120.12633 * 359.74694 * 8 7 6 10 10 C 1.38763 * 120.09039 * 0.50784 * 9 8 7 11 11 O 1.35905 * 120.01951 * 179.76750 * 10 9 8 12 12 C 1.42901 * 116.99604 * 359.72480 * 11 10 9 13 13 C 1.52998 * 109.47046 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00175 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99988 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99802 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47100 * 90.00108 * 18 16 14 20 20 H 1.48502 * 109.47426 * 209.99898 * 18 16 14 21 21 H 1.48506 * 109.47455 * 330.00292 * 18 16 14 22 22 C 1.38618 * 119.96644 * 359.49430 * 10 9 8 23 23 C 1.53776 * 87.17302 * 25.38900 * 4 3 2 24 24 H 1.09001 * 109.46947 * 60.00093 * 1 2 3 25 25 H 1.09007 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47160 * 299.99966 * 1 2 3 27 27 H 1.09000 * 112.85109 * 228.80522 * 2 1 3 28 28 H 1.09003 * 113.61577 * 334.56720 * 3 2 1 29 29 H 1.09001 * 113.61859 * 203.66673 * 3 2 1 30 30 H 1.09005 * 113.61044 * 270.80086 * 4 3 2 31 31 H 0.96989 * 119.99987 * 336.53418 * 5 4 3 32 32 H 1.08008 * 119.98021 * 359.95603 * 7 6 5 33 33 H 1.08002 * 119.93903 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.94954 * 180.27654 * 9 8 7 35 35 H 1.08998 * 109.47043 * 300.00197 * 12 11 10 36 36 H 1.08999 * 109.47144 * 59.99795 * 12 11 10 37 37 H 1.08996 * 109.47090 * 300.00216 * 13 12 11 38 38 H 1.09007 * 109.46935 * 60.00317 * 13 12 11 39 39 H 0.97004 * 119.99745 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.06229 * 180.23539 * 22 10 9 41 41 H 1.09003 * 113.61203 * 89.15696 * 23 4 3 42 42 H 1.09002 * 113.61899 * 220.06362 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0930 1.3467 1.5356 5 7 3.2741 1.9183 2.1873 6 6 3.1899 2.3838 3.5014 7 6 1.9864 2.3048 4.1919 8 6 1.9036 2.7647 5.4915 9 6 3.0178 3.2996 6.1105 10 6 4.2207 3.3859 5.4242 11 8 5.3141 3.9164 6.0326 12 6 5.1514 4.3710 7.3776 13 6 6.4795 4.9308 7.8909 14 6 6.3078 5.4107 9.3091 15 1 5.3475 5.3246 9.7958 16 6 7.3766 5.9597 9.9853 17 7 7.2269 6.3781 11.2231 18 14 9.0373 6.1093 9.1433 19 1 9.1238 7.4187 8.4482 20 1 10.1173 6.0154 10.1582 21 1 9.1913 5.0126 8.1538 22 6 4.3082 2.9255 4.1197 23 6 2.1448 -0.1841 1.3994 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9533 -0.6616 -0.7558 28 1 1.4945 2.1704 -0.4289 29 1 3.1590 1.4427 -0.4009 30 1 1.1574 1.7163 1.9555 31 1 4.1144 1.9734 1.7061 32 1 1.1153 1.8838 3.7118 33 1 0.9676 2.7022 6.0268 34 1 2.9509 3.6543 7.1284 35 1 4.3915 5.1518 7.4078 36 1 4.8410 3.5375 8.0078 37 1 7.2390 4.1496 7.8607 38 1 6.7903 5.7642 7.2608 39 1 7.9788 6.7647 11.6986 40 1 5.2446 2.9884 3.5854 41 1 3.1576 -0.5868 1.3818 42 1 1.4923 -0.7071 2.0986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184437497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:05 Heat of formation + Delta-G solvation = -22.290805 kcal Electronic energy + Delta-G solvation = -20130.380244 eV Core-core repulsion = 17074.939874 eV Total energy + Delta-G solvation = -3055.440370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17039 -40.34231 -38.53799 -35.51056 -34.96719 -32.91331 -31.20843 -30.15121 -28.66665 -27.06950 -26.58396 -24.53984 -23.74604 -22.68720 -21.73707 -19.66503 -19.52966 -18.66695 -17.52801 -16.96517 -16.91501 -16.84389 -16.35783 -16.06459 -15.45277 -14.85062 -14.74182 -14.45588 -14.40497 -14.33918 -13.86492 -13.79813 -13.30188 -13.24432 -13.15753 -12.73843 -12.45996 -12.36986 -12.25934 -11.96224 -11.77387 -11.75816 -11.62949 -11.41469 -11.30571 -11.07378 -10.81986 -10.70824 -9.23619 -8.35197 -8.32467 -6.41886 0.56548 0.68193 1.35640 1.36998 1.50065 2.18586 2.32997 2.72325 2.94390 2.99534 3.60418 3.67075 3.87665 3.95324 3.99203 4.22780 4.23551 4.27470 4.34219 4.46421 4.54330 4.61078 4.65938 4.69689 4.79024 4.82177 4.92969 4.97893 5.06236 5.12047 5.15960 5.19042 5.29942 5.32151 5.39370 5.49575 5.50811 5.53730 5.66568 5.75321 6.16111 6.43552 6.58443 6.63498 6.83481 7.23099 8.80519 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.002687 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.307115 B =10418.566687 C =10863.854619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.124 3.876 5 N -0.728 5.728 6 C 0.252 3.748 7 C -0.238 4.238 8 C -0.034 4.034 9 C -0.284 4.284 10 C 0.154 3.846 11 O -0.337 6.337 12 C 0.089 3.911 13 C -0.006 4.006 14 C -0.537 4.537 15 H 0.042 0.958 16 C 0.013 3.987 17 N -0.942 5.942 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.251 1.251 22 C -0.250 4.250 23 C -0.154 4.154 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.404 0.596 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.270 0.730 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -13.430 -25.597 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.177 4.177 4 C 0.019 3.981 5 N -0.356 5.356 6 C 0.147 3.853 7 C -0.260 4.260 8 C -0.052 4.052 9 C -0.305 4.305 10 C 0.107 3.893 11 O -0.251 6.251 12 C 0.014 3.986 13 C -0.044 4.044 14 C -0.574 4.574 15 H 0.060 0.940 16 C -0.185 4.185 17 N -0.581 5.581 18 Si 0.773 3.227 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.175 1.175 22 C -0.274 4.274 23 C -0.193 4.193 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.240 0.760 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.247 -13.391 -25.590 31.775 hybrid contribution 1.065 0.425 0.497 1.250 sum -12.182 -12.965 -25.093 30.760 Atomic orbital electron populations 1.21647 0.93122 1.02394 1.02337 1.22186 0.96337 0.96934 0.97192 1.23397 1.02165 0.97875 0.94306 1.22679 0.89190 0.93233 0.93029 1.44768 1.13424 1.67023 1.10408 1.17491 0.92435 0.89852 0.85473 1.20766 0.97348 1.11808 0.96080 1.20948 0.97526 0.92649 0.94098 1.21216 0.94063 1.13235 1.01967 1.19091 0.86121 0.91724 0.92338 1.86002 1.34568 1.74811 1.29693 1.22645 0.99597 0.97714 0.78636 1.19450 0.93742 0.96533 0.94634 1.21106 0.97802 1.41075 0.97462 0.94008 1.25889 1.03320 0.94027 0.95312 1.70026 1.33477 1.42331 1.12303 0.85665 0.78331 0.79951 0.78797 1.18913 1.20346 1.17509 1.19788 0.99922 1.13457 0.94221 1.23613 1.01461 0.96659 0.97532 0.91641 0.91915 0.92445 0.89706 0.90326 0.89317 0.87392 0.75987 0.83896 0.83581 0.86415 0.92500 0.92543 0.95454 0.95533 0.92079 0.85533 0.90298 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.59 71.98 0.69 -0.38 16 2 C -0.11 -0.98 4.55 -10.21 -0.05 -1.03 16 3 C -0.14 -1.38 7.42 31.12 0.23 -1.15 16 4 C 0.12 1.63 3.65 45.51 0.17 1.80 16 5 N -0.73 -12.87 5.54 -316.52 -1.75 -14.63 16 6 C 0.25 6.16 6.65 38.20 0.25 6.42 16 7 C -0.24 -5.47 9.26 22.41 0.21 -5.26 16 8 C -0.03 -0.86 10.03 22.24 0.22 -0.64 16 9 C -0.28 -9.23 9.04 22.39 0.20 -9.02 16 10 C 0.15 5.48 6.68 22.49 0.15 5.63 16 11 O -0.34 -13.91 10.13 -92.48 -0.94 -14.85 16 12 C 0.09 3.86 4.68 71.98 0.34 4.20 16 13 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 14 C -0.54 -31.43 9.66 25.60 0.25 -31.19 16 15 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 16 C 0.01 0.75 5.47 84.66 0.46 1.21 16 17 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 18 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 22 C -0.25 -7.56 9.83 22.49 0.22 -7.34 16 23 C -0.15 -1.84 7.45 31.18 0.23 -1.61 16 24 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.06 0.46 7.34 -2.39 -0.02 0.44 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 30 H 0.11 1.40 5.72 -2.38 -0.01 1.38 16 31 H 0.40 6.24 8.72 -92.72 -0.81 5.43 16 32 H 0.14 2.48 6.08 -2.91 -0.02 2.46 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.12 3.94 6.29 -2.91 -0.02 3.92 16 35 H 0.06 2.43 7.67 -2.39 -0.02 2.41 16 36 H 0.06 2.41 7.65 -2.39 -0.02 2.40 16 37 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 38 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 Total: -1.00 -67.18 339.75 3.34 -63.84 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.14 Total: 15.97 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.71 Total: -38.53 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.45 Total: -73.18 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.94 Total: -14.85 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -67.18 3.34 -63.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184437497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.546 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds