Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99779 * 359.50247 * 4 3 2 6 6 C 1.38211 * 120.00163 * 0.44980 * 5 4 3 7 7 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46872 * 324.99410 * 8 7 2 10 10 C 1.52996 * 109.47235 * 84.99426 * 8 7 2 11 11 C 1.53002 * 109.46880 * 185.00218 * 10 8 7 12 12 C 1.53000 * 109.47236 * 65.00061 * 11 10 8 13 13 C 1.52997 * 109.47018 * 185.00228 * 11 10 8 14 14 N 1.46504 * 109.46807 * 204.99936 * 8 7 2 15 15 C 1.34779 * 119.99817 * 154.99818 * 14 8 7 16 16 O 1.21689 * 119.99985 * 359.97438 * 15 14 8 17 17 C 1.46368 * 120.00152 * 179.97438 * 15 14 8 18 18 H 1.08001 * 119.99738 * 359.97438 * 17 15 14 19 19 C 1.40051 * 120.00288 * 180.02562 * 17 15 14 20 20 N 1.30672 * 119.99818 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99850 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47321 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47057 * 119.99907 * 21 19 17 24 24 H 1.48506 * 109.46754 * 239.99431 * 21 19 17 25 25 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 26 26 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 27 27 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08004 * 120.00379 * 180.28376 * 5 4 3 31 31 H 1.08002 * 120.00349 * 179.83142 * 6 5 4 32 32 H 1.08997 * 109.47380 * 304.99894 * 10 8 7 33 33 H 1.08999 * 109.47105 * 65.00653 * 10 8 7 34 34 H 1.09005 * 109.47016 * 304.99843 * 11 10 8 35 35 H 1.08995 * 109.46815 * 299.99976 * 12 11 10 36 36 H 1.08996 * 109.47121 * 60.00165 * 12 11 10 37 37 H 1.09008 * 109.46875 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47702 * 60.00041 * 13 11 10 39 39 H 1.09003 * 109.47008 * 180.02562 * 13 11 10 40 40 H 1.08996 * 109.47173 * 299.99734 * 13 11 10 41 41 H 0.96990 * 119.99759 * 334.98980 * 14 8 7 42 42 H 0.96994 * 119.99599 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 0.0006 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5340 -2.3954 0.5915 10 6 1.0799 -2.8818 -1.4348 11 6 0.2088 -4.1396 -1.4244 12 6 -1.1229 -3.8320 -0.7367 13 6 -0.0523 -4.5910 -2.8628 14 7 2.2847 -3.5505 0.5858 15 6 1.7152 -4.6323 1.1534 16 8 0.5033 -4.7379 1.1810 17 6 2.5546 -5.6800 1.7365 18 1 3.6303 -5.5865 1.7115 19 6 1.9630 -6.8044 2.3258 20 7 0.6615 -6.9178 2.3555 21 14 3.0343 -8.1412 3.0705 22 1 4.4646 -7.7763 2.9094 23 1 2.7184 -8.2814 4.5147 24 1 2.7713 -9.4288 2.3790 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6584 2.1326 -0.0005 29 1 4.1205 2.1325 -0.0099 30 1 5.3517 -0.0003 0.0001 31 1 4.1205 -2.1324 0.0018 32 1 0.5300 -2.0630 -1.8987 33 1 1.9905 -3.0753 -2.0018 34 1 0.7230 -4.9332 -0.8822 35 1 -0.9368 -3.5105 0.2880 36 1 -1.6371 -3.0385 -1.2788 37 1 -1.7433 -4.7283 -0.7289 38 1 0.8963 -4.8102 -3.3528 39 1 -0.6733 -5.4868 -2.8554 40 1 -0.5665 -3.7975 -3.4049 41 1 3.2506 -3.4662 0.5640 42 1 0.2518 -7.6963 2.7639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186073224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -48.545111 kcal Electronic energy + Delta-G solvation = -22090.722276 eV Core-core repulsion = 19034.143433 eV Total energy + Delta-G solvation = -3056.578843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05115 -39.29267 -37.02183 -35.01957 -34.42450 -33.73760 -31.72303 -29.50463 -28.01691 -27.91210 -27.60522 -24.85449 -23.09447 -21.68998 -21.10580 -20.53587 -19.16030 -17.59541 -17.23344 -16.71242 -16.27006 -15.98266 -15.66179 -15.35634 -15.08366 -14.64721 -14.38396 -14.28374 -13.86067 -13.80472 -13.44720 -13.14098 -13.08422 -13.01401 -12.90107 -12.80667 -12.62531 -12.50130 -12.41203 -12.00720 -11.93952 -11.77221 -11.53275 -11.27635 -11.10766 -10.85447 -9.68914 -9.56817 -9.45208 -9.18806 -8.20611 -6.75507 0.49370 0.53351 1.38780 1.39765 1.55382 2.26216 2.57524 2.89337 3.21609 3.70897 3.77991 4.00731 4.08724 4.17177 4.23379 4.24439 4.30838 4.43686 4.60487 4.70084 4.76929 4.79630 4.86057 4.90327 4.92381 4.93974 4.97753 5.05409 5.12330 5.20631 5.26054 5.35289 5.37382 5.48209 5.62266 5.66319 5.69881 5.80462 5.86427 5.99322 6.18344 6.31112 6.45530 6.95661 7.65535 8.60219 8.80241 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005986 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.232524 B = 4676.812561 C = 5642.396661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.099 4.099 8 C 0.192 3.808 9 H 0.067 0.933 10 C -0.099 4.099 11 C -0.095 4.095 12 C -0.117 4.117 13 C -0.136 4.136 14 N -0.753 5.753 15 C 0.545 3.455 16 O -0.593 6.593 17 C -0.577 4.577 18 H 0.074 0.926 19 C 0.037 3.963 20 N -0.815 5.815 21 Si 0.985 3.015 22 H -0.253 1.253 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.386 0.614 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 13.700 -7.069 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.100 4.100 8 C 0.087 3.913 9 H 0.084 0.916 10 C -0.138 4.138 11 C -0.113 4.113 12 C -0.174 4.174 13 C -0.194 4.194 14 N -0.409 5.409 15 C 0.348 3.652 16 O -0.478 6.478 17 C -0.614 4.614 18 H 0.093 0.907 19 C -0.178 4.178 20 N -0.445 5.445 21 Si 0.806 3.194 22 H -0.176 1.176 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.319 13.531 -7.005 15.594 hybrid contribution 0.709 -1.095 0.563 1.421 sum 4.029 12.436 -6.442 14.574 Atomic orbital electron populations 1.20897 0.90714 1.02845 1.03043 1.19935 0.96788 0.92529 0.99998 1.21298 0.94797 0.97422 1.00471 1.21459 0.94295 0.98747 0.99556 1.21372 1.00898 0.91992 1.00209 1.21076 0.93560 0.99027 1.00872 1.20004 0.94491 0.94263 1.01214 1.19589 0.93262 0.84382 0.94104 0.91570 1.21852 0.98991 0.97304 0.95606 1.21059 0.96541 0.97901 0.95818 1.21594 0.95980 0.99250 1.00588 1.21782 1.01041 1.00849 0.95687 1.46103 1.08707 1.22043 1.63999 1.18313 0.88081 0.81306 0.77513 1.90560 1.15471 1.79380 1.62429 1.21404 0.94130 1.05239 1.40646 0.90747 1.26711 0.96145 1.00682 0.94276 1.70163 1.12162 1.27459 1.34673 0.85154 0.79173 0.77129 0.77972 1.17595 1.19590 1.19572 0.89929 0.93128 0.89822 0.83644 0.83287 0.84020 0.86475 0.90620 0.92667 0.93507 0.93300 0.92547 0.95890 0.92975 0.93926 0.91328 0.77929 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.40 71.24 0.67 -2.28 16 2 C -0.09 -2.54 5.88 -19.86 -0.12 -2.66 16 3 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 5 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 6 C -0.13 -3.73 9.24 22.27 0.21 -3.52 16 7 C -0.10 -3.21 5.06 -19.86 -0.10 -3.31 16 8 C 0.19 7.44 1.88 44.24 0.08 7.52 16 9 H 0.07 2.94 3.94 -2.38 -0.01 2.93 16 10 C -0.10 -3.51 4.34 30.59 0.13 -3.38 16 11 C -0.09 -3.85 2.38 -10.79 -0.03 -3.87 16 12 C -0.12 -4.84 8.03 71.98 0.58 -4.27 16 13 C -0.14 -4.51 9.19 71.98 0.66 -3.85 16 14 N -0.75 -33.84 4.94 -450.39 -2.23 -36.06 16 15 C 0.54 30.45 6.30 86.36 0.54 30.99 16 16 O -0.59 -36.33 9.97 -4.31 -0.04 -36.38 16 17 C -0.58 -32.65 9.54 24.83 0.24 -32.42 16 18 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 19 C 0.04 2.06 5.50 85.31 0.47 2.53 16 20 N -0.81 -49.12 11.83 21.84 0.26 -48.86 16 21 Si 0.98 41.66 29.56 68.60 2.03 43.68 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.52 6.03 -2.39 -0.01 1.51 16 27 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 28 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.12 3.44 6.07 -2.91 -0.02 3.42 16 32 H 0.08 2.33 7.94 -2.39 -0.02 2.31 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.42 5.19 -2.38 -0.01 2.41 16 35 H 0.05 2.33 4.75 -2.39 -0.01 2.32 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.39 15.70 6.18 -92.72 -0.57 15.12 16 42 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 Total: -1.00 -70.17 329.65 4.46 -65.70 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.45 Total: 37.96 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.00 Total: -26.05 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.97 Total: -84.92 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.04 Total: -36.38 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.17 4.46 -65.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186073224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.159 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds