Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38249 * 120.00003 * 2 1 4 4 C 1.38220 * 119.99816 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99909 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00195 * 359.74852 * 5 4 3 7 7 C 1.38213 * 119.99496 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00405 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46703 * 36.33737 * 8 7 2 10 10 C 1.52997 * 109.47556 * 276.33321 * 8 7 2 11 11 C 1.52992 * 109.47235 * 174.99966 * 10 8 7 12 12 C 1.52997 * 109.46987 * 175.00206 * 11 10 8 13 13 C 1.53008 * 109.47169 * 294.99907 * 11 10 8 14 14 N 1.46507 * 109.47186 * 156.33289 * 8 7 2 15 15 C 1.34774 * 119.99869 * 272.69184 * 14 8 7 16 16 O 1.21687 * 120.00153 * 359.97438 * 15 14 8 17 17 C 1.46378 * 119.99890 * 179.97438 * 15 14 8 18 18 H 1.08006 * 119.99655 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00205 * 179.97438 * 17 15 14 20 20 N 1.30670 * 120.00031 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00164 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47014 * 59.99687 * 21 19 17 23 23 H 1.48498 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47078 * 300.00464 * 21 19 17 25 25 H 1.09003 * 109.47123 * 270.01945 * 1 2 3 26 26 H 1.08998 * 109.47286 * 30.01634 * 1 2 3 27 27 H 1.09002 * 109.47513 * 150.02159 * 1 2 3 28 28 H 1.07993 * 120.00314 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.99829 * 180.02562 * 4 3 2 30 30 H 1.07996 * 119.99916 * 180.02562 * 5 4 3 31 31 H 1.07994 * 120.00196 * 180.27314 * 6 5 4 32 32 H 1.09005 * 109.46785 * 54.99976 * 10 8 7 33 33 H 1.09000 * 109.46941 * 295.00667 * 10 8 7 34 34 H 1.08999 * 109.47268 * 55.00481 * 11 10 8 35 35 H 1.09010 * 109.47359 * 60.00112 * 12 11 10 36 36 H 1.08999 * 109.47139 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47490 * 300.00030 * 12 11 10 38 38 H 1.09000 * 109.47029 * 300.00692 * 13 11 10 39 39 H 1.09002 * 109.46685 * 60.00357 * 13 11 10 40 40 H 1.08999 * 109.47134 * 180.02562 * 13 11 10 41 41 H 0.96997 * 119.99840 * 92.68514 * 14 8 7 42 42 H 0.96993 * 120.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0053 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 1 0.5457 -2.4032 -0.6069 10 6 1.0521 -2.8633 1.4357 11 6 0.1814 -4.1212 1.4248 12 6 -0.1076 -4.5540 2.8635 13 6 -1.1368 -3.8228 0.7075 14 7 2.2956 -3.5580 -0.5524 15 6 2.3217 -3.7739 -1.8825 16 8 1.6380 -3.0923 -2.6231 17 6 3.1726 -4.8285 -2.4361 18 1 3.7791 -5.4338 -1.7787 19 6 3.1994 -5.0533 -3.8182 20 7 2.4651 -4.3214 -4.6135 21 14 4.2846 -6.3996 -4.5246 22 1 3.8808 -7.7105 -3.9556 23 1 4.1339 -6.4329 -6.0016 24 1 5.7024 -6.1253 -4.1782 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6583 2.1325 0.0004 29 1 4.1204 2.1325 0.0010 30 1 5.3516 -0.0002 0.0014 31 1 4.1205 -2.1324 0.0097 32 1 0.4935 -2.0385 1.8783 33 1 1.9517 -3.0491 2.0226 34 1 0.7058 -4.9217 0.9030 35 1 -0.6321 -3.7535 3.3854 36 1 -0.7283 -5.4499 2.8558 37 1 0.8314 -4.7666 3.3746 38 1 -1.6612 -3.0223 1.2293 39 1 -0.9309 -3.5145 -0.3175 40 1 -1.7574 -4.7189 0.7001 41 1 2.8404 -4.1015 0.0380 42 1 2.4839 -4.4768 -5.5707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186073241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = -40.133226 kcal Electronic energy + Delta-G solvation = -21935.733571 eV Core-core repulsion = 18879.519495 eV Total energy + Delta-G solvation = -3056.214076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.54045 -37.40149 -36.02878 -33.32860 -32.48582 -32.21595 -30.23463 -28.14598 -26.96771 -26.43015 -26.00207 -23.43628 -21.44302 -20.33616 -19.86781 -19.04215 -17.24655 -16.13191 -15.56127 -15.15889 -14.74338 -14.67221 -14.10557 -13.87403 -13.75479 -13.42360 -13.12362 -12.70493 -12.46230 -12.21984 -12.17900 -12.00810 -11.84891 -11.67712 -11.58429 -11.24857 -11.09935 -10.98297 -10.80121 -10.57303 -10.43507 -10.34316 -10.25328 -10.18891 -10.03613 -8.82572 -8.29811 -8.07868 -7.57487 -7.48564 -6.15327 -4.61093 1.82889 1.88886 3.16600 3.21740 3.23264 4.12075 4.22051 4.61671 4.85343 4.99984 5.19619 5.22540 5.26529 5.31074 5.46403 5.54185 5.62940 5.74328 5.78139 5.85063 5.86372 5.90920 5.97863 6.05041 6.06889 6.08323 6.14654 6.20826 6.24266 6.42409 6.48852 6.53333 6.57933 6.70312 6.75966 6.91530 7.01022 7.20573 7.45607 7.50397 7.95548 8.14446 8.35833 9.05516 9.57543 10.63786 10.83411 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.006714 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.766949 B = 4169.403578 C = 5399.597062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.131 4.131 5 C -0.130 4.130 6 C -0.094 4.094 7 C -0.073 4.073 8 C 0.186 3.814 9 H 0.095 0.905 10 C -0.112 4.112 11 C -0.096 4.096 12 C -0.144 4.144 13 C -0.148 4.148 14 N -0.757 5.757 15 C 0.558 3.442 16 O -0.576 6.576 17 C -0.547 4.547 18 H 0.065 0.935 19 C 0.089 3.911 20 N -0.767 5.767 21 Si 0.904 3.096 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.378 0.622 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 4.691 12.611 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.113 4.113 7 C -0.075 4.075 8 C 0.080 3.920 9 H 0.113 0.887 10 C -0.150 4.150 11 C -0.114 4.114 12 C -0.201 4.201 13 C -0.206 4.206 14 N -0.412 5.412 15 C 0.362 3.638 16 O -0.458 6.458 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.131 4.131 20 N -0.396 5.396 21 Si 0.729 3.271 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.194 1.194 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.210 0.790 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.558 5.226 11.848 13.200 hybrid contribution 1.018 -0.829 -0.198 1.328 sum -1.540 4.398 11.650 12.547 Atomic orbital electron populations 1.20839 0.91783 1.03049 1.01541 1.19679 0.95792 0.92665 1.00311 1.20875 0.94210 0.97031 1.02399 1.20963 0.94282 0.97578 1.02106 1.21062 0.99387 0.92759 1.01635 1.21021 0.94017 0.97973 0.98251 1.20433 0.94178 0.95323 0.97585 1.19588 0.94187 0.84698 0.93544 0.88725 1.21862 0.99443 0.97594 0.96126 1.21086 0.96478 0.98183 0.95695 1.21836 1.01064 1.00709 0.96534 1.21878 0.96599 1.00825 1.01250 1.46210 1.48881 1.37133 1.08928 1.18150 0.82494 0.84156 0.78973 1.90603 1.46265 1.51220 1.57744 1.20841 1.27151 1.18182 0.92201 0.91652 1.25671 0.94564 0.95761 0.97068 1.70006 1.31879 1.33667 1.04049 0.86493 0.80914 0.81687 0.77995 1.19331 1.20617 1.19365 0.91689 0.92092 0.90807 0.86849 0.86945 0.86812 0.85914 0.91541 0.92017 0.90266 0.93168 0.93031 0.93002 0.93278 0.91756 0.93188 0.79006 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.23 36.01 0.33 -1.34 16 2 C -0.08 -1.43 5.88 -104.63 -0.62 -2.05 16 3 C -0.13 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 5 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 6 C -0.09 -1.76 9.32 -39.58 -0.37 -2.13 16 7 C -0.07 -1.38 5.05 -104.62 -0.53 -1.91 16 8 C 0.19 3.48 1.55 -69.08 -0.11 3.37 16 9 H 0.10 2.01 3.79 -51.93 -0.20 1.81 16 10 C -0.11 -1.63 4.20 -26.74 -0.11 -1.74 16 11 C -0.10 -1.34 2.86 -90.62 -0.26 -1.60 16 12 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 13 C -0.15 -2.11 8.95 37.16 0.33 -1.78 16 14 N -0.76 -16.21 3.13 -56.34 -0.18 -16.39 16 15 C 0.56 15.42 7.73 -12.99 -0.10 15.32 16 16 O -0.58 -18.30 14.64 5.20 0.08 -18.23 16 17 C -0.55 -15.24 9.54 -35.63 -0.34 -15.58 16 18 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 19 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 20 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 21 Si 0.90 20.22 29.56 -169.99 -5.02 15.19 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 25 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 26 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 27 H 0.07 1.18 6.05 -51.93 -0.31 0.87 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.30 7.23 -52.49 -0.38 1.92 16 32 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 35 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.09 6.46 -51.93 -0.34 0.76 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.38 7.21 8.60 -40.82 -0.35 6.86 16 42 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -33.36 341.99 -8.57 -41.93 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.56 Total: 10.38 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.70 Total: -15.67 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.48 Total: -38.77 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.08 Total: -18.23 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.36 -8.57 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186073241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.800 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds