Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38249 * 120.00003 * 2 1 4 4 C 1.38220 * 119.99816 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99909 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00195 * 359.74852 * 5 4 3 7 7 C 1.38213 * 119.99496 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00405 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46703 * 36.33737 * 8 7 2 10 10 C 1.52997 * 109.47556 * 276.33321 * 8 7 2 11 11 C 1.52992 * 109.47235 * 174.99966 * 10 8 7 12 12 C 1.52997 * 109.46987 * 175.00206 * 11 10 8 13 13 C 1.53008 * 109.47169 * 294.99907 * 11 10 8 14 14 N 1.46507 * 109.47186 * 156.33289 * 8 7 2 15 15 C 1.34774 * 119.99869 * 272.69184 * 14 8 7 16 16 O 1.21687 * 120.00153 * 359.97438 * 15 14 8 17 17 C 1.46378 * 119.99890 * 179.97438 * 15 14 8 18 18 H 1.08006 * 119.99655 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00205 * 179.97438 * 17 15 14 20 20 N 1.30670 * 120.00031 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00164 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47014 * 59.99687 * 21 19 17 23 23 H 1.48498 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47078 * 300.00464 * 21 19 17 25 25 H 1.09003 * 109.47123 * 270.01945 * 1 2 3 26 26 H 1.08998 * 109.47286 * 30.01634 * 1 2 3 27 27 H 1.09002 * 109.47513 * 150.02159 * 1 2 3 28 28 H 1.07993 * 120.00314 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.99829 * 180.02562 * 4 3 2 30 30 H 1.07996 * 119.99916 * 180.02562 * 5 4 3 31 31 H 1.07994 * 120.00196 * 180.27314 * 6 5 4 32 32 H 1.09005 * 109.46785 * 54.99976 * 10 8 7 33 33 H 1.09000 * 109.46941 * 295.00667 * 10 8 7 34 34 H 1.08999 * 109.47268 * 55.00481 * 11 10 8 35 35 H 1.09010 * 109.47359 * 60.00112 * 12 11 10 36 36 H 1.08999 * 109.47139 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47490 * 300.00030 * 12 11 10 38 38 H 1.09000 * 109.47029 * 300.00692 * 13 11 10 39 39 H 1.09002 * 109.46685 * 60.00357 * 13 11 10 40 40 H 1.08999 * 109.47134 * 180.02562 * 13 11 10 41 41 H 0.96997 * 119.99840 * 92.68514 * 14 8 7 42 42 H 0.96993 * 120.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0053 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 1 0.5457 -2.4032 -0.6069 10 6 1.0521 -2.8633 1.4357 11 6 0.1814 -4.1212 1.4248 12 6 -0.1076 -4.5540 2.8635 13 6 -1.1368 -3.8228 0.7075 14 7 2.2956 -3.5580 -0.5524 15 6 2.3217 -3.7739 -1.8825 16 8 1.6380 -3.0923 -2.6231 17 6 3.1726 -4.8285 -2.4361 18 1 3.7791 -5.4338 -1.7787 19 6 3.1994 -5.0533 -3.8182 20 7 2.4651 -4.3214 -4.6135 21 14 4.2846 -6.3996 -4.5246 22 1 3.8808 -7.7105 -3.9556 23 1 4.1339 -6.4329 -6.0016 24 1 5.7024 -6.1253 -4.1782 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6583 2.1325 0.0004 29 1 4.1204 2.1325 0.0010 30 1 5.3516 -0.0002 0.0014 31 1 4.1205 -2.1324 0.0097 32 1 0.4935 -2.0385 1.8783 33 1 1.9517 -3.0491 2.0226 34 1 0.7058 -4.9217 0.9030 35 1 -0.6321 -3.7535 3.3854 36 1 -0.7283 -5.4499 2.8558 37 1 0.8314 -4.7666 3.3746 38 1 -1.6612 -3.0223 1.2293 39 1 -0.9309 -3.5145 -0.3175 40 1 -1.7574 -4.7189 0.7001 41 1 2.8404 -4.1015 0.0380 42 1 2.4839 -4.4768 -5.5707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186073241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = -59.635348 kcal Electronic energy + Delta-G solvation = -21936.579247 eV Core-core repulsion = 18879.519495 eV Total energy + Delta-G solvation = -3057.059751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94873 -39.08925 -37.58128 -34.96623 -34.35861 -33.71234 -31.80615 -29.56286 -28.05125 -27.99308 -27.63563 -24.76442 -22.94155 -21.89299 -21.19294 -20.55653 -19.20051 -17.54005 -17.40116 -16.81305 -16.15534 -15.96539 -15.61649 -15.31575 -15.12431 -14.81798 -14.37994 -14.33475 -13.94804 -13.86994 -13.48067 -13.26816 -13.06629 -13.01736 -12.94661 -12.73976 -12.69805 -12.55409 -12.42481 -12.08376 -11.99340 -11.81582 -11.51353 -11.47471 -11.35813 -10.90332 -9.80366 -9.61477 -9.41164 -9.33038 -8.25941 -6.81977 0.53444 0.57772 1.38041 1.41566 1.52493 2.24323 2.51907 2.91206 3.19515 3.62573 3.83861 4.03103 4.04763 4.06775 4.12761 4.25152 4.30040 4.40831 4.58295 4.62212 4.72125 4.79791 4.81477 4.83958 4.88968 4.94963 4.98038 5.03413 5.12806 5.18557 5.24144 5.32844 5.34194 5.37487 5.50244 5.56107 5.64034 5.70504 5.81129 5.93872 6.22078 6.28009 6.41056 6.89916 7.61994 8.55521 8.73418 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.006714 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.766949 B = 4169.403578 C = 5399.597062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.129 4.129 4 C -0.129 4.129 5 C -0.139 4.139 6 C -0.122 4.122 7 C -0.101 4.101 8 C 0.190 3.810 9 H 0.065 0.935 10 C -0.100 4.100 11 C -0.095 4.095 12 C -0.136 4.136 13 C -0.145 4.145 14 N -0.742 5.742 15 C 0.549 3.451 16 O -0.627 6.627 17 C -0.576 4.576 18 H 0.083 0.917 19 C 0.031 3.969 20 N -0.822 5.822 21 Si 0.991 3.009 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.256 1.256 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.390 0.610 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 5.066 14.390 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.140 4.140 7 C -0.102 4.102 8 C 0.084 3.916 9 H 0.083 0.917 10 C -0.137 4.137 11 C -0.114 4.114 12 C -0.193 4.193 13 C -0.202 4.202 14 N -0.395 5.395 15 C 0.352 3.648 16 O -0.514 6.514 17 C -0.613 4.613 18 H 0.101 0.899 19 C -0.184 4.184 20 N -0.451 5.451 21 Si 0.811 3.189 22 H -0.178 1.178 23 H -0.200 1.200 24 H -0.180 1.180 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.223 0.777 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.828 5.598 13.699 14.911 hybrid contribution 0.769 -0.853 -0.701 1.346 sum -1.059 4.745 12.998 13.877 Atomic orbital electron populations 1.20850 0.90343 1.02565 1.03099 1.20032 0.97137 0.92692 1.00161 1.21288 0.94682 0.97639 1.01069 1.21389 0.94505 0.98407 1.00398 1.21357 1.00576 0.92562 1.01244 1.21089 0.94250 0.98520 1.00135 1.20513 0.94506 0.95812 0.99382 1.19668 0.92438 0.84296 0.95208 0.91721 1.21791 1.00153 0.98447 0.93350 1.21065 0.95808 0.97050 0.97476 1.21761 1.01875 1.01490 0.94217 1.21840 0.97232 1.01850 0.99266 1.45817 1.48771 1.37622 1.07296 1.18401 0.81955 0.83835 0.80564 1.90555 1.48219 1.52955 1.59671 1.21397 1.27721 1.18797 0.93372 0.89875 1.26888 0.95840 0.98408 0.97267 1.70186 1.34151 1.36190 1.04597 0.85167 0.78685 0.77953 0.77081 1.17831 1.20026 1.18031 0.88991 0.90568 0.93254 0.83756 0.83553 0.84863 0.87289 0.89678 0.90998 0.92930 0.91591 0.92362 0.92168 0.91057 0.95618 0.92475 0.77700 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 9.23 71.24 0.66 -2.51 16 2 C -0.10 -3.34 5.88 -19.87 -0.12 -3.46 16 3 C -0.13 -3.74 9.70 22.27 0.22 -3.53 16 4 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 5 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 6 C -0.12 -4.61 9.32 22.27 0.21 -4.40 16 7 C -0.10 -3.85 5.05 -19.86 -0.10 -3.95 16 8 C 0.19 7.36 1.55 44.24 0.07 7.43 16 9 H 0.07 2.94 3.79 -2.39 -0.01 2.94 16 10 C -0.10 -2.86 4.20 30.59 0.13 -2.73 16 11 C -0.10 -2.64 2.86 -10.79 -0.03 -2.68 16 12 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 13 C -0.14 -4.16 8.95 71.98 0.64 -3.52 16 14 N -0.74 -33.30 3.13 -450.39 -1.41 -34.71 16 15 C 0.55 31.84 7.73 86.36 0.67 32.51 16 16 O -0.63 -42.32 14.64 -4.31 -0.06 -42.38 16 17 C -0.58 -33.05 9.54 24.83 0.24 -32.81 16 18 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 19 C 0.03 1.75 5.50 85.30 0.47 2.22 16 20 N -0.82 -51.27 11.83 21.83 0.26 -51.01 16 21 Si 0.99 41.86 29.56 68.60 2.03 43.89 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 H 0.09 2.04 8.04 -2.39 -0.02 2.02 16 26 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 27 H 0.05 1.64 6.05 -2.39 -0.01 1.63 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.11 4.26 7.23 -2.91 -0.02 4.24 16 32 H 0.08 2.14 7.67 -2.38 -0.02 2.13 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.73 7.62 -2.39 -0.02 1.71 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.02 0.92 6.46 -2.39 -0.02 0.90 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.39 15.45 8.60 -92.71 -0.80 14.65 16 42 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -76.70 341.99 5.18 -71.51 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: 0.21 Total: 39.96 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.16 Total: -27.26 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.15 Total: -85.72 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.06 Total: -42.38 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.70 5.18 -71.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186073241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.879 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds