Wall clock time and date at job start Mon Mar 30 2020 02:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99823 * 2 1 4 4 C 1.38216 * 119.99725 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99877 * 359.69851 * 5 4 3 7 7 C 1.50698 * 120.00297 * 180.29937 * 6 5 4 8 8 H 1.09000 * 109.47511 * 200.25921 * 7 6 5 9 9 N 1.46506 * 109.46946 * 320.25600 * 7 6 5 10 10 C 1.34776 * 119.99993 * 204.99742 * 9 7 6 11 11 O 1.21692 * 120.00215 * 0.02562 * 10 9 7 12 12 C 1.46371 * 119.99962 * 179.97438 * 10 9 7 13 13 H 1.08005 * 120.00039 * 0.02562 * 12 10 9 14 14 C 1.40048 * 120.00176 * 179.97438 * 12 10 9 15 15 N 1.30679 * 119.99944 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00411 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47151 * 89.99886 * 16 14 12 18 18 H 1.48498 * 109.47335 * 210.00788 * 16 14 12 19 19 H 1.48504 * 109.46775 * 330.00107 * 16 14 12 20 20 C 1.53000 * 109.47234 * 80.25431 * 7 6 5 21 21 C 1.52998 * 109.46997 * 60.00233 * 20 7 6 22 22 C 1.52998 * 109.47396 * 180.02562 * 20 7 6 23 23 C 1.52994 * 109.46952 * 300.00523 * 20 7 6 24 24 C 1.38212 * 119.99857 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46665 * 270.01967 * 1 2 3 26 26 H 1.09001 * 109.47281 * 30.01624 * 1 2 3 27 27 H 1.08992 * 109.47193 * 150.02279 * 1 2 3 28 28 H 1.07997 * 120.00472 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.99686 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00093 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99979 * 24.99803 * 9 7 6 32 32 H 0.96992 * 119.99749 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47114 * 59.99682 * 21 20 7 34 34 H 1.08998 * 109.47476 * 180.02562 * 21 20 7 35 35 H 1.09003 * 109.47145 * 299.99947 * 21 20 7 36 36 H 1.09001 * 109.46806 * 59.99542 * 22 20 7 37 37 H 1.08989 * 109.47258 * 180.02562 * 22 20 7 38 38 H 1.09002 * 109.46679 * 300.00296 * 22 20 7 39 39 H 1.08995 * 109.47728 * 59.99783 * 23 20 7 40 40 H 1.09002 * 109.47333 * 180.02562 * 23 20 7 41 41 H 1.09001 * 109.47068 * 299.99448 * 23 20 7 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 4.3341 -2.5020 0.0131 8 1 3.6810 -3.3005 -0.3389 9 7 5.4984 -2.3984 -0.8701 10 6 6.0247 -3.5085 -1.4244 11 8 5.5326 -4.5968 -1.1916 12 6 7.1875 -3.4048 -2.3073 13 1 7.6241 -2.4389 -2.5143 14 6 7.7348 -4.5583 -2.8829 15 7 7.2069 -5.7272 -2.6321 16 14 9.2193 -4.4263 -4.0090 17 1 10.4624 -4.5384 -3.2046 18 1 9.1784 -5.5203 -5.0123 19 1 9.1969 -3.1149 -4.7056 20 6 4.8001 -2.8145 1.4365 21 6 3.5842 -2.9228 2.3589 22 6 5.5655 -4.1392 1.4434 23 6 5.7168 -1.6937 1.9306 24 6 2.1981 -1.1970 0.0005 25 1 -0.3632 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6584 2.1326 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 5.8904 -1.5308 -1.0560 32 1 7.5857 -6.5260 -3.0310 33 1 2.9310 -3.7212 2.0069 34 1 3.9161 -3.1450 3.3731 35 1 3.0392 -1.9788 2.3540 36 1 6.4317 -4.0617 0.7863 37 1 5.8970 -4.3621 2.4575 38 1 4.9126 -4.9379 1.0912 39 1 5.1719 -0.7498 1.9257 40 1 6.0492 -1.9165 2.9445 41 1 6.5831 -1.6166 1.2735 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187734058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:37 Heat of formation + Delta-G solvation = -32.585797 kcal Electronic energy + Delta-G solvation = -22081.365720 eV Core-core repulsion = 19025.478925 eV Total energy + Delta-G solvation = -3055.886795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96527 -37.83306 -35.78220 -32.92236 -32.50245 -31.82433 -30.68426 -27.31658 -26.81771 -26.49005 -26.10384 -24.76420 -21.95618 -20.65301 -19.77903 -17.90628 -17.41724 -16.16296 -15.45521 -15.12885 -14.81976 -14.77590 -14.18249 -13.91658 -13.69183 -13.46541 -13.06157 -12.72144 -12.50137 -12.23586 -12.16293 -11.92429 -11.73190 -11.61387 -11.34796 -11.20787 -11.02572 -10.97761 -10.86830 -10.60857 -10.44243 -10.41675 -10.18889 -9.99420 -9.83559 -8.82203 -8.56518 -8.35125 -7.53775 -7.38661 -6.15539 -4.60703 1.55560 1.59274 3.15057 3.22375 3.25335 3.93750 4.13165 4.61660 4.79962 4.95065 5.04241 5.10174 5.29797 5.37454 5.39289 5.52273 5.58317 5.62866 5.68868 5.81944 5.83927 5.88946 6.01257 6.09851 6.19174 6.22434 6.24844 6.29828 6.42194 6.48945 6.63608 6.63958 6.68616 6.74378 6.82048 6.90748 7.05496 7.22259 7.41118 7.46044 7.96278 8.15290 8.36475 9.05756 9.57704 10.63148 10.82987 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.005224 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.430059 B = 5358.553711 C = 5815.186786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.062 4.062 7 C 0.202 3.798 8 H 0.082 0.918 9 N -0.757 5.757 10 C 0.558 3.442 11 O -0.572 6.572 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.090 3.910 15 N -0.767 5.767 16 Si 0.904 3.096 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.071 4.071 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.112 4.112 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.378 0.622 32 H 0.267 0.733 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 11.497 6.933 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.063 4.063 7 C 0.095 3.905 8 H 0.100 0.900 9 N -0.412 5.412 10 C 0.362 3.638 11 O -0.455 6.455 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.396 5.396 16 Si 0.729 3.271 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.072 4.072 21 C -0.196 4.196 22 C -0.183 4.183 23 C -0.199 4.199 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.210 0.790 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.362 10.459 7.052 15.134 hybrid contribution 0.997 0.542 -0.649 1.307 sum -7.365 11.001 6.404 14.706 Atomic orbital electron populations 1.20760 0.91592 1.02522 1.01973 1.19831 0.95733 0.93180 1.00301 1.20908 0.94264 0.97113 1.02687 1.21064 0.94220 0.97785 1.00578 1.21035 1.00096 0.91887 1.00382 1.20185 0.93663 0.95528 0.96910 1.19484 0.88613 0.92562 0.89814 0.90005 1.46261 1.32473 1.10383 1.52084 1.18091 0.83909 0.82059 0.79702 1.90606 1.63750 1.26713 1.64419 1.20879 1.13729 0.93951 1.29795 0.91711 1.25653 0.96988 0.94830 0.95496 1.70014 1.35872 0.98311 1.35379 0.86438 0.81940 0.78611 0.80155 1.19824 1.20535 1.19008 1.20872 0.95265 0.96513 0.94568 1.21874 0.97770 1.01166 0.98803 1.21847 1.01677 0.95473 0.99269 1.21973 0.99734 0.98016 1.00169 1.20909 0.93548 0.97466 1.01120 0.91489 0.91882 0.91631 0.86727 0.86446 0.85892 0.78959 0.92235 0.92930 0.93285 0.92998 0.90867 0.95262 0.92161 0.92787 0.93723 0.92201 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.77 16 3 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 4 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 5 C -0.12 -1.68 6.85 -39.59 -0.27 -1.95 16 6 C -0.06 -1.00 3.79 -104.63 -0.40 -1.39 16 7 C 0.20 3.84 1.81 -69.08 -0.13 3.72 16 8 H 0.08 1.79 7.44 -51.93 -0.39 1.40 16 9 N -0.76 -16.44 4.14 -56.34 -0.23 -16.68 16 10 C 0.56 15.18 6.10 -12.99 -0.08 15.10 16 11 O -0.57 -17.36 12.14 5.20 0.06 -17.30 16 12 C -0.55 -15.15 9.54 -35.63 -0.34 -15.49 16 13 H 0.06 1.67 7.85 -52.48 -0.41 1.26 16 14 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 15 N -0.77 -22.59 11.83 55.55 0.66 -21.93 16 16 Si 0.90 20.10 29.56 -169.99 -5.02 15.07 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.07 -1.23 0.62 -154.51 -0.10 -1.33 16 21 C -0.14 -2.08 8.07 37.16 0.30 -1.78 16 22 C -0.13 -2.59 7.00 37.16 0.26 -2.33 16 23 C -0.14 -2.24 7.24 37.15 0.27 -1.97 16 24 C -0.11 -1.64 8.36 -39.58 -0.33 -1.97 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.74 6.10 -52.49 -0.32 1.42 16 31 H 0.38 7.48 6.83 -40.82 -0.28 7.20 16 32 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.73 6.64 -51.93 -0.34 0.39 16 36 H 0.07 1.78 5.78 -51.93 -0.30 1.48 16 37 H 0.03 0.53 8.14 -51.94 -0.42 0.11 16 38 H 0.06 1.36 7.52 -51.93 -0.39 0.97 16 39 H 0.05 0.78 5.62 -51.93 -0.29 0.49 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.01 7.60 -51.93 -0.39 0.62 16 42 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -31.63 330.21 -7.98 -39.61 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.47 Total: 9.64 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.94 Total: -13.40 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.42 Total: -38.61 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.06 Total: -17.30 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.63 -7.98 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187734058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.027 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds