Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99823 * 2 1 4 4 C 1.38216 * 119.99725 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99877 * 359.69851 * 5 4 3 7 7 C 1.50698 * 120.00297 * 180.29937 * 6 5 4 8 8 H 1.09000 * 109.47511 * 200.25921 * 7 6 5 9 9 N 1.46506 * 109.46946 * 320.25600 * 7 6 5 10 10 C 1.34776 * 119.99993 * 204.99742 * 9 7 6 11 11 O 1.21692 * 120.00215 * 0.02562 * 10 9 7 12 12 C 1.46371 * 119.99962 * 179.97438 * 10 9 7 13 13 H 1.08005 * 120.00039 * 0.02562 * 12 10 9 14 14 C 1.40048 * 120.00176 * 179.97438 * 12 10 9 15 15 N 1.30679 * 119.99944 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00411 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47151 * 89.99886 * 16 14 12 18 18 H 1.48498 * 109.47335 * 210.00788 * 16 14 12 19 19 H 1.48504 * 109.46775 * 330.00107 * 16 14 12 20 20 C 1.53000 * 109.47234 * 80.25431 * 7 6 5 21 21 C 1.52998 * 109.46997 * 60.00233 * 20 7 6 22 22 C 1.52998 * 109.47396 * 180.02562 * 20 7 6 23 23 C 1.52994 * 109.46952 * 300.00523 * 20 7 6 24 24 C 1.38212 * 119.99857 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46665 * 270.01967 * 1 2 3 26 26 H 1.09001 * 109.47281 * 30.01624 * 1 2 3 27 27 H 1.08992 * 109.47193 * 150.02279 * 1 2 3 28 28 H 1.07997 * 120.00472 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.99686 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00093 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99979 * 24.99803 * 9 7 6 32 32 H 0.96992 * 119.99749 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47114 * 59.99682 * 21 20 7 34 34 H 1.08998 * 109.47476 * 180.02562 * 21 20 7 35 35 H 1.09003 * 109.47145 * 299.99947 * 21 20 7 36 36 H 1.09001 * 109.46806 * 59.99542 * 22 20 7 37 37 H 1.08989 * 109.47258 * 180.02562 * 22 20 7 38 38 H 1.09002 * 109.46679 * 300.00296 * 22 20 7 39 39 H 1.08995 * 109.47728 * 59.99783 * 23 20 7 40 40 H 1.09002 * 109.47333 * 180.02562 * 23 20 7 41 41 H 1.09001 * 109.47068 * 299.99448 * 23 20 7 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 4.3341 -2.5020 0.0131 8 1 3.6810 -3.3005 -0.3389 9 7 5.4984 -2.3984 -0.8701 10 6 6.0247 -3.5085 -1.4244 11 8 5.5326 -4.5968 -1.1916 12 6 7.1875 -3.4048 -2.3073 13 1 7.6241 -2.4389 -2.5143 14 6 7.7348 -4.5583 -2.8829 15 7 7.2069 -5.7272 -2.6321 16 14 9.2193 -4.4263 -4.0090 17 1 10.4624 -4.5384 -3.2046 18 1 9.1784 -5.5203 -5.0123 19 1 9.1969 -3.1149 -4.7056 20 6 4.8001 -2.8145 1.4365 21 6 3.5842 -2.9228 2.3589 22 6 5.5655 -4.1392 1.4434 23 6 5.7168 -1.6937 1.9306 24 6 2.1981 -1.1970 0.0005 25 1 -0.3632 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6584 2.1326 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 5.8904 -1.5308 -1.0560 32 1 7.5857 -6.5260 -3.0310 33 1 2.9310 -3.7212 2.0069 34 1 3.9161 -3.1450 3.3731 35 1 3.0392 -1.9788 2.3540 36 1 6.4317 -4.0617 0.7863 37 1 5.8970 -4.3621 2.4575 38 1 4.9126 -4.9379 1.0912 39 1 5.1719 -0.7498 1.9257 40 1 6.0492 -1.9165 2.9445 41 1 6.5831 -1.6166 1.2735 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187734058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = -51.326979 kcal Electronic energy + Delta-G solvation = -22082.178399 eV Core-core repulsion = 19025.478925 eV Total energy + Delta-G solvation = -3056.699473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29658 -39.35154 -37.53936 -34.66014 -34.20312 -33.20738 -32.01206 -28.74539 -28.47284 -27.90060 -27.32569 -26.39167 -23.03812 -22.07902 -21.45115 -19.49473 -19.18871 -17.55897 -17.28033 -16.51351 -16.33886 -16.13626 -15.61136 -15.48962 -14.85749 -14.58007 -14.42213 -14.20811 -13.99497 -13.87255 -13.36799 -13.12464 -12.99289 -12.94815 -12.81377 -12.78239 -12.60600 -12.53363 -12.46229 -12.23676 -12.01121 -11.82667 -11.76435 -11.54717 -11.27337 -10.88501 -9.77274 -9.62295 -9.39722 -9.26192 -8.23934 -6.79656 0.48617 0.53500 1.39265 1.40537 1.54823 2.25422 2.53888 2.86508 3.21179 3.66107 3.73444 3.98757 4.01338 4.12405 4.12971 4.24001 4.34022 4.54972 4.56584 4.66421 4.71939 4.79566 4.84703 4.87770 4.92127 4.96581 5.03759 5.07732 5.11459 5.15597 5.26838 5.32958 5.35268 5.35903 5.52801 5.62014 5.65748 5.71552 5.77201 5.95352 6.18233 6.27986 6.39165 6.91982 7.62484 8.57112 8.75308 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.005224 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.430059 B = 5358.553711 C = 5815.186786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.079 4.079 7 C 0.206 3.794 8 H 0.040 0.960 9 N -0.745 5.745 10 C 0.548 3.452 11 O -0.614 6.614 12 C -0.577 4.577 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.819 5.819 16 Si 0.990 3.010 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.252 1.252 20 C -0.069 4.069 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.128 4.128 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.388 0.612 32 H 0.272 0.728 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.234 14.788 7.366 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.080 4.080 7 C 0.100 3.900 8 H 0.059 0.941 9 N -0.399 5.399 10 C 0.351 3.649 11 O -0.500 6.500 12 C -0.614 4.614 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.449 5.449 16 Si 0.810 3.190 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.175 1.175 20 C -0.070 4.070 21 C -0.187 4.187 22 C -0.172 4.172 23 C -0.190 4.190 24 C -0.146 4.146 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.223 0.777 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.610 13.804 7.507 17.917 hybrid contribution 0.965 -0.432 -0.751 1.297 sum -7.645 13.372 6.755 16.819 Atomic orbital electron populations 1.20820 0.89434 1.03362 1.03146 1.20169 0.97369 0.92556 0.98918 1.21327 0.94260 0.98075 1.00808 1.21386 0.94738 0.97961 0.99087 1.21076 1.00177 0.92100 1.01184 1.19880 0.94097 0.94220 0.99763 1.19446 0.87133 0.93560 0.89872 0.94142 1.45933 1.32845 1.09438 1.51662 1.18332 0.84085 0.82610 0.79835 1.90569 1.64958 1.28640 1.65856 1.21402 1.14425 0.95055 1.30478 0.90232 1.26821 1.00390 0.93992 0.96924 1.70182 1.38165 0.99474 1.37063 0.85131 0.77102 0.79169 0.77586 1.18748 1.19930 1.17533 1.20836 0.96442 0.95293 0.94444 1.21777 0.96405 1.01700 0.98775 1.21686 0.99703 0.96661 0.99138 1.21886 0.98741 0.97946 1.00407 1.20972 0.93104 0.98424 1.02117 0.90050 0.90032 0.91868 0.83535 0.83614 0.86008 0.77740 0.91851 0.93781 0.91551 0.91532 0.95076 0.93061 0.95393 0.90869 0.92202 0.93850 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 2 C -0.09 -2.06 5.88 -19.86 -0.12 -2.18 16 3 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 4 C -0.11 -2.49 10.05 22.27 0.22 -2.26 16 5 C -0.13 -3.49 6.85 22.27 0.15 -3.33 16 6 C -0.08 -2.51 3.79 -19.87 -0.08 -2.59 16 7 C 0.21 8.20 1.81 44.24 0.08 8.28 16 8 H 0.04 1.93 7.44 -2.39 -0.02 1.91 16 9 N -0.75 -33.88 4.14 -450.39 -1.87 -35.74 16 10 C 0.55 31.47 6.10 86.36 0.53 31.99 16 11 O -0.61 -39.98 12.14 -4.32 -0.05 -40.03 16 12 C -0.58 -33.00 9.54 24.83 0.24 -32.76 16 13 H 0.08 4.15 7.85 -2.91 -0.02 4.12 16 14 C 0.03 1.90 5.50 85.30 0.47 2.37 16 15 N -0.82 -50.40 11.83 21.84 0.26 -50.14 16 16 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 20 C -0.07 -2.46 0.62 -52.18 -0.03 -2.49 16 21 C -0.13 -3.81 8.07 71.98 0.58 -3.23 16 22 C -0.11 -5.01 7.00 71.98 0.50 -4.51 16 23 C -0.13 -4.07 7.24 71.98 0.52 -3.55 16 24 C -0.13 -3.66 8.36 22.27 0.19 -3.48 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.06 8.09 -2.39 -0.02 1.05 16 27 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 28 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.12 3.30 6.10 -2.91 -0.02 3.28 16 31 H 0.39 15.80 6.83 -92.71 -0.63 15.16 16 32 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.78 6.64 -2.39 -0.02 1.77 16 36 H 0.03 1.59 5.78 -2.39 -0.01 1.58 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.03 1.35 7.52 -2.39 -0.02 1.33 16 39 H 0.07 1.97 5.62 -2.39 -0.01 1.96 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.46 7.60 -2.39 -0.02 1.44 16 42 H 0.11 3.27 8.04 -2.91 -0.02 3.25 16 Total: -1.00 -73.44 330.21 4.93 -68.51 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.37 Total: 34.84 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.19 Total: -21.21 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.61 Total: -85.88 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.05 Total: -40.03 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -73.44 4.93 -68.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187734058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.188 kcal (2) G-P(sol) polarization free energy of solvation -73.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds