Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00632 * 2 1 4 4 C 1.38215 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99729 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00594 * 359.70935 * 5 4 3 7 7 C 1.38214 * 119.99785 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99948 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.46712 * 333.68813 * 8 7 2 10 10 N 1.46499 * 109.46726 * 213.69688 * 8 7 2 11 11 C 1.34778 * 119.99886 * 154.99698 * 10 8 7 12 12 O 1.21688 * 119.99916 * 359.97438 * 11 10 8 13 13 C 1.46373 * 120.00177 * 179.72188 * 11 10 8 14 14 H 1.08003 * 119.99746 * 0.27639 * 13 11 10 15 15 C 1.40046 * 120.00177 * 180.27641 * 13 11 10 16 16 N 1.30669 * 119.99927 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00006 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47251 * 59.99985 * 17 15 13 19 19 H 1.48496 * 109.46909 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47007 * 299.99763 * 17 15 13 21 21 C 1.52995 * 109.47660 * 93.69165 * 8 7 2 22 22 C 1.53000 * 109.47196 * 178.63572 * 21 8 7 23 23 C 1.53000 * 109.47287 * 298.64371 * 21 8 7 24 24 C 1.53008 * 109.46885 * 58.64040 * 21 8 7 25 25 H 1.09003 * 109.46911 * 275.72521 * 1 2 3 26 26 H 1.09003 * 109.46907 * 35.72104 * 1 2 3 27 27 H 1.08991 * 109.47390 * 155.72485 * 1 2 3 28 28 H 1.08003 * 119.99602 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99919 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99566 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.00318 * 180.29479 * 6 5 4 32 32 H 0.96994 * 120.00438 * 334.99365 * 10 8 7 33 33 H 0.97001 * 119.99862 * 179.97438 * 16 15 13 34 34 H 1.09000 * 109.46847 * 60.00253 * 22 21 8 35 35 H 1.09004 * 109.46838 * 180.02562 * 22 21 8 36 36 H 1.09002 * 109.47186 * 300.00306 * 22 21 8 37 37 H 1.08998 * 109.47273 * 53.62842 * 23 21 8 38 38 H 1.08999 * 109.47199 * 173.63520 * 23 21 8 39 39 H 1.09004 * 109.46811 * 293.62875 * 23 21 8 40 40 H 1.09000 * 109.47001 * 51.99461 * 24 21 8 41 41 H 1.09001 * 109.47079 * 171.99717 * 24 21 8 42 42 H 1.09006 * 109.46903 * 291.99966 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0061 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0005 9 1 0.4648 -2.3559 0.4557 10 7 2.1952 -3.4994 0.7674 11 6 1.5507 -4.5382 1.3347 12 8 0.3451 -4.6475 1.2104 13 6 2.3015 -5.5380 2.0957 14 1 3.3715 -5.4407 2.2064 15 6 1.6326 -6.6206 2.6804 16 7 0.3381 -6.7379 2.5469 17 14 2.5908 -7.8961 3.6523 18 1 3.2742 -7.2375 4.7944 19 1 1.6578 -8.9315 4.1646 20 1 3.6021 -8.5329 2.7708 21 6 1.2703 -2.9906 -1.4388 22 6 0.5352 -4.3324 -1.4366 23 6 0.4572 -1.9647 -2.2308 24 6 2.6448 -3.1633 -2.0885 25 1 -0.3633 0.1025 1.0226 26 1 -0.3633 0.8344 -0.6000 27 1 -0.3634 -0.9367 -0.4224 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1324 0.0010 30 1 5.3517 -0.0002 0.0005 31 1 4.1206 -2.1324 0.0109 32 1 3.1561 -3.4121 0.8668 33 1 -0.1252 -7.4880 2.9515 34 1 -0.4440 -4.2094 -0.9738 35 1 0.4116 -4.6806 -2.4621 36 1 1.1145 -5.0632 -0.8724 37 1 0.9219 -0.9831 -2.1382 38 1 0.4290 -2.2558 -3.2808 39 1 -0.5586 -1.9244 -1.8376 40 1 3.2738 -3.7826 -1.4490 41 1 2.5297 -3.6439 -3.0600 42 1 3.1102 -2.1863 -2.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187767880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -25.246806 kcal Electronic energy + Delta-G solvation = -22459.951716 eV Core-core repulsion = 19404.383164 eV Total energy + Delta-G solvation = -3055.568552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16441 -37.69413 -35.76316 -32.82281 -32.59722 -32.19444 -30.33875 -27.31491 -26.89207 -26.38803 -26.13170 -24.70354 -21.80486 -20.80262 -19.72402 -17.97888 -17.40870 -16.03402 -15.55658 -15.08430 -15.04273 -14.77604 -14.05438 -13.97602 -13.67714 -13.28964 -12.93352 -12.77092 -12.50993 -12.19859 -12.07064 -11.94825 -11.76338 -11.43639 -11.36869 -11.19924 -11.04509 -10.87147 -10.76303 -10.57492 -10.46285 -10.41975 -10.21541 -9.90531 -9.81785 -8.81872 -8.55509 -8.30802 -7.54486 -7.38813 -6.15695 -4.61005 1.57078 1.60524 3.16635 3.21876 3.23337 3.95569 4.12754 4.61390 4.84460 5.00698 5.06566 5.15208 5.22562 5.37362 5.47439 5.49945 5.59639 5.76711 5.82918 5.87411 5.89371 5.98338 6.05535 6.08201 6.17997 6.22781 6.28539 6.35241 6.48375 6.49028 6.62737 6.65746 6.67852 6.73000 6.82404 6.92244 7.06046 7.23340 7.40533 7.45608 7.95817 8.15257 8.35930 9.05393 9.57155 10.62932 10.82708 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.005691 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.812686 B = 4918.491679 C = 5366.708870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.128 4.128 5 C -0.128 4.128 6 C -0.107 4.107 7 C -0.068 4.068 8 C 0.199 3.801 9 H 0.087 0.913 10 N -0.758 5.758 11 C 0.559 3.441 12 O -0.572 6.572 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.090 3.910 16 N -0.767 5.767 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.377 0.623 33 H 0.267 0.733 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 12.016 -6.914 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.125 4.125 7 C -0.069 4.069 8 C 0.093 3.907 9 H 0.105 0.895 10 N -0.413 5.413 11 C 0.363 3.637 12 O -0.455 6.455 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.396 5.396 17 Si 0.729 3.271 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.072 4.072 22 C -0.183 4.183 23 C -0.202 4.202 24 C -0.195 4.195 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.530 11.803 -6.944 14.142 hybrid contribution 1.121 -0.531 0.565 1.363 sum 4.650 11.272 -6.379 13.762 Atomic orbital electron populations 1.21165 0.91491 1.03677 1.02480 1.19720 0.96034 0.92402 0.99545 1.20932 0.94217 0.97173 1.01908 1.21006 0.94260 0.97717 1.01624 1.21052 0.99510 0.92563 1.01439 1.21004 0.93865 0.98010 0.99663 1.20069 0.93832 0.94920 0.98032 1.19520 0.95734 0.84301 0.91162 0.89486 1.46286 1.09592 1.27571 1.57864 1.18072 0.87311 0.79804 0.78522 1.90601 1.14674 1.76408 1.63818 1.20843 0.94543 1.08174 1.34857 0.91776 1.25645 0.94578 0.97769 0.94949 1.69999 1.08086 1.26892 1.34577 0.86502 0.79994 0.80332 0.80313 1.19396 1.20622 1.19371 1.20883 0.95362 0.96291 0.94694 1.21864 1.01437 0.95986 0.99027 1.22096 0.99786 0.98949 0.99348 1.21888 0.96992 1.00821 0.99781 0.91307 0.91886 0.89719 0.86563 0.86699 0.86522 0.85991 0.78977 0.92175 0.92015 0.95242 0.90940 0.92506 0.93327 0.92550 0.92239 0.93642 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.54 36.01 0.31 -1.45 16 2 C -0.08 -1.11 4.77 -104.62 -0.50 -1.61 16 3 C -0.12 -1.59 9.73 -39.58 -0.38 -1.97 16 4 C -0.13 -1.56 10.05 -39.59 -0.40 -1.95 16 5 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 6 C -0.11 -1.58 7.29 -39.58 -0.29 -1.87 16 7 C -0.07 -1.09 3.89 -104.62 -0.41 -1.50 16 8 C 0.20 3.77 1.49 -69.08 -0.10 3.66 16 9 H 0.09 1.87 5.81 -51.93 -0.30 1.57 16 10 N -0.76 -16.42 4.07 -56.35 -0.23 -16.65 16 11 C 0.56 15.13 6.05 -12.99 -0.08 15.05 16 12 O -0.57 -17.24 12.14 5.20 0.06 -17.18 16 13 C -0.55 -15.13 9.54 -35.63 -0.34 -15.47 16 14 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 15 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 16 N -0.77 -22.51 11.83 55.55 0.66 -21.85 16 17 Si 0.90 20.07 29.56 -169.99 -5.02 15.04 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.07 -1.23 0.62 -154.51 -0.10 -1.32 16 22 C -0.13 -2.59 6.98 37.16 0.26 -2.33 16 23 C -0.14 -2.13 6.99 37.16 0.26 -1.87 16 24 C -0.14 -2.18 7.32 37.16 0.27 -1.90 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.08 1.22 3.38 -51.93 -0.18 1.05 16 28 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.76 6.18 -52.49 -0.32 1.43 16 32 H 0.38 7.45 6.45 -40.82 -0.26 7.18 16 33 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 34 H 0.06 1.39 7.43 -51.93 -0.39 1.00 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.75 5.81 -51.93 -0.30 1.45 16 37 H 0.06 0.80 5.58 -51.93 -0.29 0.51 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.82 6.69 -51.93 -0.35 0.48 16 40 H 0.06 1.00 7.26 -51.93 -0.38 0.62 16 41 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.05 0.72 6.58 -51.93 -0.34 0.38 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.45 319.90 -7.74 -39.19 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.04 Total: 10.83 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.99 Total: -14.19 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.43 Total: -38.50 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.06 Total: -17.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.45 -7.74 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187767880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.940 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds