Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00632 * 2 1 4 4 C 1.38215 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99729 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00594 * 359.70935 * 5 4 3 7 7 C 1.38214 * 119.99785 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99948 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.46712 * 333.68813 * 8 7 2 10 10 N 1.46499 * 109.46726 * 213.69688 * 8 7 2 11 11 C 1.34778 * 119.99886 * 154.99698 * 10 8 7 12 12 O 1.21688 * 119.99916 * 359.97438 * 11 10 8 13 13 C 1.46373 * 120.00177 * 179.72188 * 11 10 8 14 14 H 1.08003 * 119.99746 * 0.27639 * 13 11 10 15 15 C 1.40046 * 120.00177 * 180.27641 * 13 11 10 16 16 N 1.30669 * 119.99927 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00006 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47251 * 59.99985 * 17 15 13 19 19 H 1.48496 * 109.46909 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47007 * 299.99763 * 17 15 13 21 21 C 1.52995 * 109.47660 * 93.69165 * 8 7 2 22 22 C 1.53000 * 109.47196 * 178.63572 * 21 8 7 23 23 C 1.53000 * 109.47287 * 298.64371 * 21 8 7 24 24 C 1.53008 * 109.46885 * 58.64040 * 21 8 7 25 25 H 1.09003 * 109.46911 * 275.72521 * 1 2 3 26 26 H 1.09003 * 109.46907 * 35.72104 * 1 2 3 27 27 H 1.08991 * 109.47390 * 155.72485 * 1 2 3 28 28 H 1.08003 * 119.99602 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99919 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99566 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.00318 * 180.29479 * 6 5 4 32 32 H 0.96994 * 120.00438 * 334.99365 * 10 8 7 33 33 H 0.97001 * 119.99862 * 179.97438 * 16 15 13 34 34 H 1.09000 * 109.46847 * 60.00253 * 22 21 8 35 35 H 1.09004 * 109.46838 * 180.02562 * 22 21 8 36 36 H 1.09002 * 109.47186 * 300.00306 * 22 21 8 37 37 H 1.08998 * 109.47273 * 53.62842 * 23 21 8 38 38 H 1.08999 * 109.47199 * 173.63520 * 23 21 8 39 39 H 1.09004 * 109.46811 * 293.62875 * 23 21 8 40 40 H 1.09000 * 109.47001 * 51.99461 * 24 21 8 41 41 H 1.09001 * 109.47079 * 171.99717 * 24 21 8 42 42 H 1.09006 * 109.46903 * 291.99966 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0061 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0005 9 1 0.4648 -2.3559 0.4557 10 7 2.1952 -3.4994 0.7674 11 6 1.5507 -4.5382 1.3347 12 8 0.3451 -4.6475 1.2104 13 6 2.3015 -5.5380 2.0957 14 1 3.3715 -5.4407 2.2064 15 6 1.6326 -6.6206 2.6804 16 7 0.3381 -6.7379 2.5469 17 14 2.5908 -7.8961 3.6523 18 1 3.2742 -7.2375 4.7944 19 1 1.6578 -8.9315 4.1646 20 1 3.6021 -8.5329 2.7708 21 6 1.2703 -2.9906 -1.4388 22 6 0.5352 -4.3324 -1.4366 23 6 0.4572 -1.9647 -2.2308 24 6 2.6448 -3.1633 -2.0885 25 1 -0.3633 0.1025 1.0226 26 1 -0.3633 0.8344 -0.6000 27 1 -0.3634 -0.9367 -0.4224 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1324 0.0010 30 1 5.3517 -0.0002 0.0005 31 1 4.1206 -2.1324 0.0109 32 1 3.1561 -3.4121 0.8668 33 1 -0.1252 -7.4880 2.9515 34 1 -0.4440 -4.2094 -0.9738 35 1 0.4116 -4.6806 -2.4621 36 1 1.1145 -5.0632 -0.8724 37 1 0.9219 -0.9831 -2.1382 38 1 0.4290 -2.2558 -3.2808 39 1 -0.5586 -1.9244 -1.8376 40 1 3.2738 -3.7826 -1.4490 41 1 2.5297 -3.6439 -3.0600 42 1 3.1102 -2.1863 -2.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187767880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -44.037345 kcal Electronic energy + Delta-G solvation = -22460.766535 eV Core-core repulsion = 19404.383164 eV Total energy + Delta-G solvation = -3056.383371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47907 -39.26006 -37.45926 -34.67048 -34.07368 -33.73126 -31.69347 -28.83102 -28.33362 -27.86740 -27.58466 -26.19956 -23.04355 -21.96554 -21.53836 -19.53705 -19.14364 -17.55235 -17.19364 -16.63968 -16.47182 -15.99346 -15.69679 -15.39102 -14.94107 -14.63911 -14.43067 -14.20782 -13.89464 -13.77221 -13.39482 -13.25457 -13.05450 -12.91830 -12.84132 -12.72619 -12.59999 -12.52678 -12.39452 -12.11280 -11.98556 -11.86165 -11.75834 -11.43046 -11.17157 -10.87256 -9.75084 -9.58678 -9.44573 -9.21107 -8.23451 -6.79174 0.50482 0.55415 1.39022 1.42117 1.52756 2.25465 2.54446 2.89124 3.21653 3.67796 3.76139 3.98879 4.02650 4.10844 4.16482 4.24333 4.32371 4.49778 4.59666 4.70155 4.76808 4.79536 4.80915 4.87603 4.92272 4.94870 4.99218 5.08959 5.12617 5.19421 5.29209 5.32179 5.35089 5.41014 5.53199 5.64452 5.65937 5.68824 5.82142 5.95831 6.19532 6.28377 6.41591 6.92296 7.62829 8.57530 8.75954 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.005691 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.812686 B = 4918.491679 C = 5366.708870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.089 4.089 8 C 0.204 3.796 9 H 0.051 0.949 10 N -0.747 5.747 11 C 0.549 3.451 12 O -0.613 6.613 13 C -0.578 4.578 14 H 0.078 0.922 15 C 0.034 3.966 16 N -0.818 5.818 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.069 4.069 22 C -0.115 4.115 23 C -0.135 4.135 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.387 0.613 33 H 0.272 0.728 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 13.994 -7.529 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.138 4.138 7 C -0.090 4.090 8 C 0.098 3.902 9 H 0.069 0.931 10 N -0.401 5.401 11 C 0.352 3.648 12 O -0.499 6.499 13 C -0.615 4.615 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.448 5.448 17 Si 0.809 3.191 18 H -0.182 1.182 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.070 4.070 22 C -0.172 4.172 23 C -0.192 4.192 24 C -0.186 4.186 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.222 0.778 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.917 13.823 -7.582 16.839 hybrid contribution 0.391 -1.035 0.732 1.327 sum 6.308 12.788 -6.850 15.819 Atomic orbital electron populations 1.21157 0.91283 1.03874 1.02436 1.19877 0.96443 0.92636 0.99913 1.21259 0.94842 0.97307 1.00712 1.21435 0.94156 0.98794 0.99456 1.21358 1.00882 0.91921 1.00290 1.21053 0.93282 0.98995 1.00461 1.19823 0.94395 0.93709 1.01026 1.19484 0.94163 0.85372 0.91176 0.93093 1.45974 1.10050 1.26900 1.57169 1.18295 0.86962 0.80890 0.78627 1.90563 1.16389 1.77649 1.65295 1.21374 0.95461 1.09107 1.35571 0.90345 1.26800 0.95537 1.00048 0.95688 1.70168 1.10405 1.28114 1.36090 0.85204 0.78356 0.76910 0.78642 1.18191 1.19968 1.18062 1.20842 0.96528 0.95059 0.94572 1.21701 0.99391 0.97137 0.98995 1.22001 0.99061 0.98582 0.99582 1.21798 0.95446 1.01633 0.99702 0.92049 0.89114 0.91523 0.83908 0.83389 0.83969 0.86430 0.77848 0.91843 0.95165 0.93136 0.95179 0.91160 0.91666 0.93059 0.93783 0.92434 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.54 71.24 0.61 -2.82 16 2 C -0.09 -2.44 4.77 -19.87 -0.09 -2.53 16 3 C -0.12 -2.72 9.73 22.27 0.22 -2.50 16 4 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 5 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 6 C -0.12 -3.35 7.29 22.27 0.16 -3.19 16 7 C -0.09 -2.82 3.89 -19.86 -0.08 -2.90 16 8 C 0.20 8.01 1.49 44.24 0.07 8.08 16 9 H 0.05 2.36 5.81 -2.39 -0.01 2.35 16 10 N -0.75 -33.88 4.07 -450.40 -1.83 -35.71 16 11 C 0.55 31.39 6.05 86.36 0.52 31.91 16 12 O -0.61 -39.56 12.14 -4.31 -0.05 -39.62 16 13 C -0.58 -33.05 9.54 24.83 0.24 -32.82 16 14 H 0.08 4.09 7.85 -2.91 -0.02 4.06 16 15 C 0.03 1.94 5.50 85.30 0.47 2.41 16 16 N -0.82 -50.17 11.83 21.83 0.26 -49.91 16 17 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 21 C -0.07 -2.43 0.62 -52.18 -0.03 -2.46 16 22 C -0.11 -4.99 6.98 71.98 0.50 -4.48 16 23 C -0.13 -3.89 6.99 71.98 0.50 -3.39 16 24 C -0.13 -3.97 7.32 71.98 0.53 -3.44 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 27 H 0.07 1.98 3.38 -2.39 -0.01 1.98 16 28 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.12 3.30 6.18 -2.91 -0.02 3.28 16 32 H 0.39 15.79 6.45 -92.71 -0.60 15.19 16 33 H 0.27 15.24 8.29 -92.71 -0.77 14.48 16 34 H 0.03 1.45 7.43 -2.39 -0.02 1.43 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.03 1.53 5.81 -2.39 -0.01 1.52 16 37 H 0.07 1.85 5.58 -2.39 -0.01 1.84 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.52 6.69 -2.39 -0.02 1.51 16 40 H 0.04 1.47 7.26 -2.39 -0.02 1.46 16 41 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 42 H 0.07 1.84 6.58 -2.38 -0.02 1.83 16 Total: -1.00 -72.80 319.90 4.89 -67.91 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.43 Total: 36.51 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 4.06 Total: -22.94 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.57 Total: -85.62 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.05 Total: -39.62 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.80 4.89 -67.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187767880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.870 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds