Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 120.00153 * 2 1 4 4 C 1.38210 * 120.00166 * 179.73940 * 3 2 1 5 5 C 1.38258 * 120.00102 * 0.53176 * 4 3 2 6 6 C 1.38218 * 119.99413 * 359.74249 * 5 4 3 7 7 C 1.38216 * 119.99949 * 180.26622 * 2 1 3 8 8 C 1.50693 * 120.00124 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.47273 * 26.61530 * 8 7 2 10 10 N 1.46505 * 109.47561 * 146.61382 * 8 7 2 11 11 C 1.34768 * 119.99906 * 273.90049 * 10 8 7 12 12 O 1.21688 * 120.00438 * 359.97438 * 11 10 8 13 13 C 1.46373 * 119.99891 * 179.97438 * 11 10 8 14 14 H 1.08005 * 120.00217 * 6.83822 * 13 11 10 15 15 C 1.40051 * 120.00114 * 186.83172 * 13 11 10 16 16 N 1.30676 * 119.99998 * 6.88074 * 15 13 11 17 17 Si 1.86803 * 120.00030 * 186.87994 * 15 13 11 18 18 H 1.48496 * 109.47134 * 94.98571 * 17 15 13 19 19 H 1.48500 * 109.46971 * 214.98146 * 17 15 13 20 20 H 1.48495 * 109.47035 * 334.98011 * 17 15 13 21 21 C 1.53000 * 109.47188 * 266.61618 * 8 7 2 22 22 C 1.52995 * 109.47436 * 57.29173 * 21 8 7 23 23 C 1.52999 * 109.47498 * 177.29919 * 21 8 7 24 24 C 1.53004 * 109.46980 * 297.29596 * 21 8 7 25 25 H 1.08997 * 109.47661 * 268.76921 * 1 2 3 26 26 H 1.09009 * 109.46914 * 148.76650 * 1 2 3 27 27 H 1.09001 * 109.47111 * 28.77186 * 1 2 3 28 28 H 1.08000 * 119.99963 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00260 * 180.29612 * 4 3 2 30 30 H 1.07993 * 120.00597 * 179.76675 * 5 4 3 31 31 H 1.08004 * 119.99719 * 180.02562 * 6 5 4 32 32 H 0.96999 * 119.99474 * 93.89048 * 10 8 7 33 33 H 0.96997 * 120.00027 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.46750 * 58.03886 * 22 21 8 35 35 H 1.09001 * 109.47471 * 178.03926 * 22 21 8 36 36 H 1.08998 * 109.47068 * 298.04158 * 22 21 8 37 37 H 1.08997 * 109.47400 * 59.99495 * 23 21 8 38 38 H 1.08998 * 109.47478 * 179.97438 * 23 21 8 39 39 H 1.09002 * 109.46564 * 299.99461 * 23 21 8 40 40 H 1.09000 * 109.47592 * 59.99625 * 24 21 8 41 41 H 1.08994 * 109.47578 * 179.97438 * 24 21 8 42 42 H 1.09009 * 109.47264 * 299.99977 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2717 0.0000 -0.0002 6 6 3.5805 -1.1969 -0.0060 7 6 2.1980 -1.1970 -0.0056 8 6 1.4446 -2.5020 -0.0122 9 1 0.4674 -2.3551 -0.4723 10 7 2.1994 -3.4980 -0.7768 11 6 2.0486 -3.5771 -2.1137 12 8 1.2852 -2.8216 -2.6857 13 6 2.8032 -4.5717 -2.8777 14 1 3.3953 -5.3134 -2.3620 15 6 2.7574 -4.5619 -4.2774 16 7 2.1529 -3.5877 -4.9045 17 14 3.5605 -5.9412 -5.2480 18 1 2.5441 -6.9732 -5.5751 19 1 4.1327 -5.3943 -6.5045 20 1 4.6432 -6.5525 -4.4360 21 6 1.2627 -2.9933 1.4253 22 6 0.5334 -1.9242 2.2413 23 6 0.4398 -4.2831 1.4233 24 6 2.6334 -3.2639 2.0490 25 1 -0.3634 -0.0221 1.0274 26 1 -0.3633 -0.8788 -0.5329 27 1 -0.3633 0.9008 -0.4946 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1326 0.0103 30 1 5.3516 0.0000 0.0002 31 1 4.1206 -2.1323 -0.0100 32 1 2.8078 -4.1003 -0.3208 33 1 2.1215 -3.5807 -5.8740 34 1 -0.4284 -1.7062 1.7772 35 1 0.3730 -2.2881 3.2562 36 1 1.1361 -1.0165 2.2719 37 1 0.9594 -5.0448 0.8421 38 1 0.3106 -4.6333 2.4474 39 1 -0.5368 -4.0902 0.9791 40 1 3.2199 -2.3451 2.0504 41 1 2.5040 -3.6135 3.0732 42 1 3.1531 -4.0257 1.4677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187767897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -29.800451 kcal Electronic energy + Delta-G solvation = -22472.469560 eV Core-core repulsion = 19416.703547 eV Total energy + Delta-G solvation = -3055.766013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98976 -37.44502 -36.14104 -32.69764 -32.51854 -31.94632 -30.29296 -27.25645 -27.04219 -26.71542 -26.17246 -24.65605 -21.60534 -20.62881 -19.66825 -18.35070 -17.16795 -16.07234 -15.45995 -15.33039 -14.76396 -14.61723 -14.01766 -13.89936 -13.64722 -13.13821 -13.05119 -12.79205 -12.55221 -12.21027 -12.03097 -11.94759 -11.81463 -11.65553 -11.38179 -11.34118 -11.14163 -11.02766 -10.82542 -10.56563 -10.50818 -10.42808 -10.17234 -10.11756 -10.01316 -8.82136 -8.26371 -8.05194 -7.55449 -7.47427 -6.18252 -4.59632 1.85987 1.90802 3.15042 3.22352 3.25323 4.12179 4.23387 4.61535 4.81678 5.05681 5.11962 5.25154 5.29505 5.35539 5.48570 5.54036 5.67755 5.79017 5.81645 5.86070 5.90949 5.92716 6.04580 6.05362 6.09177 6.12608 6.18855 6.24340 6.30332 6.43168 6.45283 6.55606 6.62670 6.68036 6.68611 6.94198 7.02398 7.23808 7.46164 7.52408 7.96290 8.14834 8.37109 9.06039 9.57688 10.63639 10.82892 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.006445 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.308966 B = 4343.570105 C = 4971.916966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.094 4.094 7 C -0.065 4.065 8 C 0.197 3.803 9 H 0.090 0.910 10 N -0.757 5.757 11 C 0.560 3.440 12 O -0.578 6.578 13 C -0.548 4.548 14 H 0.066 0.934 15 C 0.090 3.910 16 N -0.768 5.768 17 Si 0.904 3.096 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.378 0.622 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 4.016 13.328 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.112 4.112 7 C -0.066 4.066 8 C 0.090 3.910 9 H 0.107 0.893 10 N -0.411 5.411 11 C 0.364 3.636 12 O -0.461 6.461 13 C -0.585 4.585 14 H 0.084 0.916 15 C -0.129 4.129 16 N -0.397 5.397 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.070 4.070 22 C -0.201 4.201 23 C -0.194 4.194 24 C -0.202 4.202 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.326 4.642 12.700 13.526 hybrid contribution 0.888 -0.874 -0.462 1.328 sum 0.561 3.768 12.238 12.818 Atomic orbital electron populations 1.21048 0.91896 1.03069 1.01801 1.19657 0.95784 0.92591 0.99744 1.20880 0.94196 0.97063 1.02427 1.20941 0.94273 0.97537 1.02104 1.21032 0.99299 0.92779 1.01963 1.20950 0.93973 0.97749 0.98546 1.20275 0.93956 0.95204 0.97196 1.19563 0.95813 0.85484 0.90108 0.89263 1.46272 1.48412 1.37920 1.08529 1.18165 0.82397 0.84152 0.78925 1.90591 1.40782 1.46015 1.68667 1.20863 1.31182 1.15428 0.91032 0.91586 1.25662 0.93831 0.95425 0.98012 1.69995 1.32894 1.28080 1.08721 0.86418 0.79784 0.81603 0.79284 1.19833 1.20548 1.18963 1.20722 0.95850 0.95784 0.94611 1.22057 1.00392 0.98657 0.98961 1.21815 0.99890 0.96915 1.00793 1.21963 0.96536 1.01938 0.99762 0.91165 0.90597 0.92297 0.86897 0.87011 0.86899 0.86248 0.78846 0.92177 0.92234 0.93107 0.92156 0.91901 0.93243 0.92807 0.92068 0.93104 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.34 36.00 0.30 -1.55 16 2 C -0.08 -1.33 4.80 -104.63 -0.50 -1.84 16 3 C -0.13 -2.02 9.70 -39.58 -0.38 -2.40 16 4 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 5 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 6 C -0.09 -1.70 7.36 -39.58 -0.29 -2.00 16 7 C -0.06 -1.20 3.83 -104.63 -0.40 -1.60 16 8 C 0.20 3.70 1.27 -69.08 -0.09 3.61 16 9 H 0.09 1.92 5.23 -51.93 -0.27 1.65 16 10 N -0.76 -16.36 3.34 -56.35 -0.19 -16.55 16 11 C 0.56 15.60 7.69 -12.99 -0.10 15.50 16 12 O -0.58 -18.45 14.76 5.20 0.08 -18.38 16 13 C -0.55 -15.38 9.53 -35.63 -0.34 -15.72 16 14 H 0.07 1.70 7.86 -52.48 -0.41 1.29 16 15 C 0.09 2.53 5.48 -17.36 -0.10 2.44 16 16 N -0.77 -23.15 11.91 55.55 0.66 -22.49 16 17 Si 0.90 20.30 29.56 -169.99 -5.03 15.28 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 C -0.07 -1.00 0.60 -154.51 -0.09 -1.10 16 22 C -0.14 -1.82 6.68 37.16 0.25 -1.57 16 23 C -0.14 -1.93 8.34 37.16 0.31 -1.62 16 24 C -0.14 -1.92 7.58 37.16 0.28 -1.63 16 25 H 0.07 0.88 5.89 -51.93 -0.31 0.58 16 26 H 0.08 1.31 5.95 -51.92 -0.31 1.00 16 27 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.12 2.14 7.24 -52.48 -0.38 1.76 16 32 H 0.38 7.33 6.65 -40.82 -0.27 7.06 16 33 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 34 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.80 6.23 -51.93 -0.32 0.47 16 37 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.84 6.03 -51.93 -0.31 0.52 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.77 6.38 -51.92 -0.33 0.44 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -33.55 326.77 -7.66 -41.20 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.16 Total: 10.45 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.95 Total: -14.44 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.47 Total: -39.04 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.08 Total: -18.38 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.55 -7.66 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187767897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.404 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds