Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 120.00153 * 2 1 4 4 C 1.38210 * 120.00166 * 179.73940 * 3 2 1 5 5 C 1.38258 * 120.00102 * 0.53176 * 4 3 2 6 6 C 1.38218 * 119.99413 * 359.74249 * 5 4 3 7 7 C 1.38216 * 119.99949 * 180.26622 * 2 1 3 8 8 C 1.50693 * 120.00124 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.47273 * 26.61530 * 8 7 2 10 10 N 1.46505 * 109.47561 * 146.61382 * 8 7 2 11 11 C 1.34768 * 119.99906 * 273.90049 * 10 8 7 12 12 O 1.21688 * 120.00438 * 359.97438 * 11 10 8 13 13 C 1.46373 * 119.99891 * 179.97438 * 11 10 8 14 14 H 1.08005 * 120.00217 * 6.83822 * 13 11 10 15 15 C 1.40051 * 120.00114 * 186.83172 * 13 11 10 16 16 N 1.30676 * 119.99998 * 6.88074 * 15 13 11 17 17 Si 1.86803 * 120.00030 * 186.87994 * 15 13 11 18 18 H 1.48496 * 109.47134 * 94.98571 * 17 15 13 19 19 H 1.48500 * 109.46971 * 214.98146 * 17 15 13 20 20 H 1.48495 * 109.47035 * 334.98011 * 17 15 13 21 21 C 1.53000 * 109.47188 * 266.61618 * 8 7 2 22 22 C 1.52995 * 109.47436 * 57.29173 * 21 8 7 23 23 C 1.52999 * 109.47498 * 177.29919 * 21 8 7 24 24 C 1.53004 * 109.46980 * 297.29596 * 21 8 7 25 25 H 1.08997 * 109.47661 * 268.76921 * 1 2 3 26 26 H 1.09009 * 109.46914 * 148.76650 * 1 2 3 27 27 H 1.09001 * 109.47111 * 28.77186 * 1 2 3 28 28 H 1.08000 * 119.99963 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00260 * 180.29612 * 4 3 2 30 30 H 1.07993 * 120.00597 * 179.76675 * 5 4 3 31 31 H 1.08004 * 119.99719 * 180.02562 * 6 5 4 32 32 H 0.96999 * 119.99474 * 93.89048 * 10 8 7 33 33 H 0.96997 * 120.00027 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.46750 * 58.03886 * 22 21 8 35 35 H 1.09001 * 109.47471 * 178.03926 * 22 21 8 36 36 H 1.08998 * 109.47068 * 298.04158 * 22 21 8 37 37 H 1.08997 * 109.47400 * 59.99495 * 23 21 8 38 38 H 1.08998 * 109.47478 * 179.97438 * 23 21 8 39 39 H 1.09002 * 109.46564 * 299.99461 * 23 21 8 40 40 H 1.09000 * 109.47592 * 59.99625 * 24 21 8 41 41 H 1.08994 * 109.47578 * 179.97438 * 24 21 8 42 42 H 1.09009 * 109.47264 * 299.99977 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2717 0.0000 -0.0002 6 6 3.5805 -1.1969 -0.0060 7 6 2.1980 -1.1970 -0.0056 8 6 1.4446 -2.5020 -0.0122 9 1 0.4674 -2.3551 -0.4723 10 7 2.1994 -3.4980 -0.7768 11 6 2.0486 -3.5771 -2.1137 12 8 1.2852 -2.8216 -2.6857 13 6 2.8032 -4.5717 -2.8777 14 1 3.3953 -5.3134 -2.3620 15 6 2.7574 -4.5619 -4.2774 16 7 2.1529 -3.5877 -4.9045 17 14 3.5605 -5.9412 -5.2480 18 1 2.5441 -6.9732 -5.5751 19 1 4.1327 -5.3943 -6.5045 20 1 4.6432 -6.5525 -4.4360 21 6 1.2627 -2.9933 1.4253 22 6 0.5334 -1.9242 2.2413 23 6 0.4398 -4.2831 1.4233 24 6 2.6334 -3.2639 2.0490 25 1 -0.3634 -0.0221 1.0274 26 1 -0.3633 -0.8788 -0.5329 27 1 -0.3633 0.9008 -0.4946 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1326 0.0103 30 1 5.3516 0.0000 0.0002 31 1 4.1206 -2.1323 -0.0100 32 1 2.8078 -4.1003 -0.3208 33 1 2.1215 -3.5807 -5.8740 34 1 -0.4284 -1.7062 1.7772 35 1 0.3730 -2.2881 3.2562 36 1 1.1361 -1.0165 2.2719 37 1 0.9594 -5.0448 0.8421 38 1 0.3106 -4.6333 2.4474 39 1 -0.5368 -4.0902 0.9791 40 1 3.2199 -2.3451 2.0504 41 1 2.5040 -3.6135 3.0732 42 1 3.1531 -4.0257 1.4677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187767897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -50.054907 kcal Electronic energy + Delta-G solvation = -22473.347860 eV Core-core repulsion = 19416.703547 eV Total energy + Delta-G solvation = -3056.644312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37344 -39.08431 -37.80925 -34.71341 -33.91498 -33.66164 -31.74892 -28.84742 -28.29883 -27.91544 -27.64477 -26.21461 -23.02282 -21.92140 -21.52298 -19.87249 -18.92092 -17.51432 -17.34181 -16.86885 -16.25776 -15.96372 -15.61351 -15.23255 -14.94618 -14.59940 -14.50412 -14.32219 -13.94618 -13.91172 -13.35582 -13.24341 -13.07798 -13.05550 -12.88204 -12.81225 -12.56703 -12.49386 -12.45244 -12.09224 -12.00248 -11.81877 -11.64202 -11.39823 -11.33300 -10.91749 -9.81708 -9.58287 -9.38950 -9.29444 -8.29387 -6.81111 0.56179 0.60044 1.38022 1.39558 1.54510 2.24138 2.51039 2.91842 3.20208 3.62685 3.84251 3.94010 4.03387 4.06581 4.14480 4.26130 4.33365 4.43721 4.61619 4.66378 4.74035 4.80744 4.83474 4.89031 4.92135 4.95801 5.02249 5.06612 5.12798 5.17126 5.28218 5.32683 5.33169 5.37307 5.49644 5.54088 5.66432 5.72041 5.83608 5.95117 6.23661 6.28323 6.40474 6.89819 7.61089 8.54707 8.72027 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.006445 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.308966 B = 4343.570105 C = 4971.916966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.129 4.129 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.086 4.086 8 C 0.198 3.802 9 H 0.055 0.945 10 N -0.741 5.741 11 C 0.548 3.452 12 O -0.629 6.629 13 C -0.577 4.577 14 H 0.083 0.917 15 C 0.032 3.968 16 N -0.822 5.822 17 Si 0.992 3.008 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.248 1.248 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.140 4.140 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.273 0.727 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 3.962 14.861 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.134 4.134 7 C -0.088 4.088 8 C 0.092 3.908 9 H 0.073 0.927 10 N -0.395 5.395 11 C 0.352 3.648 12 O -0.516 6.516 13 C -0.614 4.614 14 H 0.101 0.899 15 C -0.183 4.183 16 N -0.452 5.452 17 Si 0.812 3.188 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.171 1.171 21 C -0.064 4.064 22 C -0.195 4.195 23 C -0.192 4.192 24 C -0.197 4.197 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.225 0.775 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.824 4.580 14.303 15.041 hybrid contribution 0.519 -0.786 -0.874 1.285 sum 1.344 3.793 13.429 14.019 Atomic orbital electron populations 1.21029 0.90964 1.02147 1.03150 1.19965 0.96790 0.92872 0.99978 1.21256 0.94786 0.97532 1.01416 1.21351 0.94346 0.98495 1.00505 1.21349 1.00567 0.92527 1.01406 1.21028 0.93985 0.98401 0.99947 1.20286 0.94338 0.95351 0.98778 1.19674 0.93675 0.85480 0.91928 0.92674 1.45890 1.48201 1.38368 1.07033 1.18444 0.81858 0.83728 0.80788 1.90543 1.42835 1.47803 1.70395 1.21400 1.31700 1.16118 0.92139 0.89894 1.26880 0.94019 0.98236 0.99137 1.70164 1.34865 1.30816 1.09357 0.85092 0.78937 0.77383 0.77397 1.19015 1.19824 1.17145 1.20713 0.97173 0.96460 0.92094 1.22002 0.99846 0.97811 0.99823 1.21808 0.98907 0.96248 1.02251 1.21919 0.95296 1.01568 1.00926 0.88530 0.93612 0.91111 0.84181 0.83738 0.84752 0.87088 0.77543 0.91765 0.92372 0.90543 0.92551 0.93657 0.90174 0.93935 0.92539 0.90494 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.57 8.34 71.23 0.59 -2.97 16 2 C -0.10 -3.29 4.80 -19.87 -0.10 -3.39 16 3 C -0.13 -3.97 9.70 22.27 0.22 -3.75 16 4 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 5 C -0.14 -4.44 10.05 22.27 0.22 -4.22 16 6 C -0.12 -4.22 7.36 22.27 0.16 -4.06 16 7 C -0.09 -3.26 3.83 -19.87 -0.08 -3.33 16 8 C 0.20 7.73 1.27 44.24 0.06 7.78 16 9 H 0.06 2.54 5.23 -2.39 -0.01 2.53 16 10 N -0.74 -33.37 3.34 -450.41 -1.50 -34.87 16 11 C 0.55 31.94 7.69 86.36 0.66 32.60 16 12 O -0.63 -42.45 14.76 -4.31 -0.06 -42.52 16 13 C -0.58 -33.15 9.53 24.83 0.24 -32.91 16 14 H 0.08 4.31 7.86 -2.91 -0.02 4.28 16 15 C 0.03 1.83 5.48 85.30 0.47 2.30 16 16 N -0.82 -51.28 11.91 21.84 0.26 -51.02 16 17 Si 0.99 41.91 29.56 68.60 2.03 43.94 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 21 C -0.06 -1.83 0.60 -52.18 -0.03 -1.86 16 22 C -0.14 -3.28 6.68 71.98 0.48 -2.80 16 23 C -0.13 -3.74 8.34 71.98 0.60 -3.14 16 24 C -0.14 -3.53 7.58 71.98 0.55 -2.98 16 25 H 0.10 2.35 5.89 -2.39 -0.01 2.34 16 26 H 0.05 1.68 5.95 -2.38 -0.01 1.66 16 27 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.11 4.10 7.24 -2.91 -0.02 4.08 16 32 H 0.39 15.55 6.65 -92.71 -0.62 14.94 16 33 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 34 H 0.06 1.39 6.35 -2.39 -0.02 1.37 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.40 6.23 -2.39 -0.01 1.39 16 37 H 0.04 1.39 7.66 -2.39 -0.02 1.37 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.49 6.03 -2.39 -0.01 1.48 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.31 6.38 -2.38 -0.02 1.29 16 Total: -1.00 -76.41 326.77 5.40 -71.02 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: 0.41 Total: 39.65 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.27 Total: -26.20 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.24 Total: -85.89 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.06 Total: -42.52 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.41 5.40 -71.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187767897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.960 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds