Wall clock time and date at job start Mon Mar 30 2020 02:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38238 * 119.99926 * 2 1 4 4 C 1.38232 * 120.00341 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00223 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99847 * 0.02562 * 4 3 2 7 7 C 1.50699 * 120.00156 * 179.97438 * 6 4 3 8 8 N 1.46904 * 109.47392 * 89.99820 * 7 6 4 9 9 C 1.47960 * 110.99975 * 190.00152 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56563 * 8 7 6 21 21 C 1.38232 * 120.00172 * 0.25348 * 6 4 3 22 22 C 1.50700 * 120.00478 * 179.72943 * 21 6 4 23 23 C 1.38234 * 120.00261 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47118 * 89.99713 * 1 2 3 25 25 H 1.09001 * 109.47017 * 209.99666 * 1 2 3 26 26 H 1.08996 * 109.47594 * 329.99572 * 1 2 3 27 27 H 1.08000 * 120.00022 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47071 * 270.01741 * 5 4 3 29 29 H 1.09000 * 109.47155 * 30.02172 * 5 4 3 30 30 H 1.09001 * 109.47044 * 150.02433 * 5 4 3 31 31 H 1.09003 * 109.46888 * 329.99982 * 7 6 4 32 32 H 1.09005 * 109.47315 * 210.00305 * 7 6 4 33 33 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 34 34 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 35 35 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 38 38 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 39 39 H 1.08997 * 109.46929 * 89.99745 * 22 21 6 40 40 H 1.08996 * 109.47195 * 210.00168 * 22 21 6 41 41 H 1.09002 * 109.46602 * 329.99831 * 22 21 6 42 42 H 1.07993 * 120.00217 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5024 -0.0011 6 6 4.2716 0.0002 -0.0016 7 6 5.7786 0.0002 -0.0028 8 7 6.2694 -0.0004 1.3818 9 6 7.7287 0.2395 1.4272 10 6 7.7737 -0.8684 2.4950 11 8 7.6309 -0.3848 3.8320 12 6 8.9323 -1.8186 2.3347 13 1 9.6512 -1.6651 1.5434 14 6 9.0748 -2.8840 3.1983 15 7 8.1998 -3.0706 4.1622 16 14 10.5106 -4.0621 2.9991 17 1 10.1193 -5.1705 2.0916 18 1 11.6705 -3.3360 2.4222 19 1 10.8836 -4.6165 4.3254 20 6 6.4603 -1.3833 1.8788 21 6 3.5806 -1.1970 -0.0074 22 6 4.3341 -2.5021 -0.0148 23 6 2.1981 -1.1971 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1325 0.0004 28 1 4.5148 2.8170 -1.0289 29 1 3.7451 3.2621 0.5131 30 1 5.2867 2.3721 0.5120 31 1 6.1415 0.8905 -0.5165 32 1 6.1416 -0.8895 -0.5173 33 1 8.0002 1.2251 1.8054 34 1 8.2470 -0.0191 0.5039 35 1 7.6295 -1.0803 4.5038 36 1 8.2998 -3.8203 4.7695 37 1 6.6052 -2.1184 1.0872 38 1 5.7202 -1.6920 2.6171 39 1 4.5164 -2.8221 1.0111 40 1 3.7447 -3.2590 -0.5322 41 1 5.2861 -2.3690 -0.5286 42 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191917470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:45 Heat of formation + Delta-G solvation = -3.795172 kcal Electronic energy + Delta-G solvation = -21783.650549 eV Core-core repulsion = 18729.012209 eV Total energy + Delta-G solvation = -3054.638340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.93858 -38.53417 -34.71407 -33.37776 -33.24957 -32.06263 -29.32736 -27.77706 -26.61097 -26.58411 -24.93450 -24.66205 -22.00564 -20.51391 -19.58575 -18.58700 -17.22114 -16.02756 -15.63335 -15.17974 -15.02417 -14.16128 -14.08163 -13.90520 -13.72434 -13.20633 -13.05871 -12.90967 -12.75337 -12.59235 -12.43811 -12.15293 -11.98025 -11.73166 -11.52940 -11.29743 -11.24833 -11.01423 -10.81652 -10.76812 -10.51577 -10.42468 -10.18893 -9.97141 -9.30809 -8.65062 -8.30271 -8.26035 -7.96303 -7.74622 -6.25099 -4.35186 1.61226 1.65264 3.18859 3.26914 3.30233 3.91487 4.26013 4.88095 4.94596 4.96510 5.01262 5.11585 5.25418 5.34454 5.49071 5.57844 5.58763 5.67451 5.76093 5.81212 5.86047 5.90168 5.92242 5.97947 6.01405 6.11967 6.17534 6.27769 6.35743 6.44601 6.47489 6.55859 6.70412 6.78368 6.80367 7.00777 7.08271 7.25876 7.32818 7.38092 7.76632 7.99848 8.03891 8.66653 9.34910 9.64250 10.80552 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.004716 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.505774 B = 5936.176329 C = 6405.501628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.063 4.063 5 C -0.116 4.116 6 C -0.066 4.066 7 C 0.050 3.950 8 N -0.469 5.469 9 C 0.007 3.993 10 C 0.243 3.757 11 O -0.572 6.572 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.272 1.272 19 H -0.284 1.284 20 C -0.008 4.008 21 C -0.067 4.067 22 C -0.121 4.121 23 C -0.130 4.130 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.387 0.613 36 H 0.270 0.730 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 4.227 -8.967 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.064 4.064 5 C -0.172 4.172 6 C -0.066 4.066 7 C -0.077 4.077 8 N -0.192 5.192 9 C -0.122 4.122 10 C 0.202 3.798 11 O -0.383 6.383 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.197 1.197 19 H -0.209 1.209 20 C -0.137 4.137 21 C -0.068 4.068 22 C -0.177 4.177 23 C -0.148 4.148 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.170 5.132 -8.784 15.108 hybrid contribution 1.097 -1.839 -0.335 2.167 sum -10.073 3.293 -9.119 13.980 Atomic orbital electron populations 1.20728 0.91697 1.02405 1.01768 1.19757 0.95553 0.93204 1.00610 1.20776 0.93463 0.97143 1.03627 1.19675 0.93290 0.94921 0.98472 1.20822 1.01128 0.93762 1.01535 1.19487 0.95280 0.91931 0.99912 1.21666 0.91267 1.01030 0.93780 1.68630 1.14540 1.20987 1.15016 1.24139 0.88259 1.00955 0.98842 1.19766 0.90623 0.88460 0.80977 1.86044 1.95959 1.39368 1.16891 1.21656 1.10965 1.09910 1.15147 0.91746 1.25044 0.96129 0.97278 0.94551 1.69435 1.35509 1.31100 1.17644 0.86454 0.82379 0.80716 0.77648 1.20473 1.19694 1.20928 1.24840 1.01082 0.88723 0.99080 1.19756 0.93483 0.95016 0.98528 1.21023 0.99837 0.93696 1.03188 1.20777 0.93408 0.97217 1.03375 0.91664 0.91849 0.91878 0.86694 0.91893 0.92033 0.90196 0.91066 0.93231 0.90726 0.91846 0.75876 0.91967 0.91989 0.91202 0.90219 0.92253 0.91193 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.09 -1.24 5.88 -104.63 -0.62 -1.85 16 3 C -0.13 -1.86 9.36 -39.58 -0.37 -2.23 16 4 C -0.06 -0.98 5.88 -104.62 -0.62 -1.59 16 5 C -0.12 -1.56 9.19 36.01 0.33 -1.23 16 6 C -0.07 -1.11 5.44 -104.63 -0.57 -1.68 16 7 C 0.05 0.89 3.84 -4.97 -0.02 0.87 16 8 N -0.47 -9.78 6.10 -239.46 -1.46 -11.24 16 9 C 0.01 0.14 7.34 -2.76 -0.02 0.12 16 10 C 0.24 6.13 1.40 -90.83 -0.13 6.00 16 11 O -0.57 -15.55 13.48 -35.23 -0.48 -16.03 16 12 C -0.54 -14.27 8.61 -34.44 -0.30 -14.57 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 15 N -0.90 -23.96 11.20 55.43 0.62 -23.34 16 16 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.01 -0.19 5.65 -2.63 -0.01 -0.21 16 21 C -0.07 -1.09 5.88 -104.62 -0.62 -1.70 16 22 C -0.12 -1.85 8.15 36.01 0.29 -1.56 16 23 C -0.13 -1.89 9.36 -39.58 -0.37 -2.26 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.08 1.21 6.67 -51.93 -0.35 0.86 16 31 H 0.07 1.15 6.64 -51.93 -0.34 0.80 16 32 H 0.05 0.86 5.27 -51.93 -0.27 0.59 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.06 1.28 7.88 -51.93 -0.41 0.87 16 35 H 0.39 10.69 6.60 45.56 0.30 11.00 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.06 1.38 5.95 -51.93 -0.31 1.07 16 38 H 0.07 1.72 8.02 -51.93 -0.42 1.30 16 39 H 0.08 1.34 6.96 -51.93 -0.36 0.98 16 40 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.07 1.08 5.33 -51.93 -0.28 0.81 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -28.13 331.35 -9.86 -37.99 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.78 Total: 13.21 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.74 Total: -20.84 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.84 Total: -34.59 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.48 Total: -16.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.13 -9.86 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.193 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds