Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38238 * 119.99926 * 2 1 4 4 C 1.38232 * 120.00341 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00223 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99847 * 0.02562 * 4 3 2 7 7 C 1.50699 * 120.00156 * 179.97438 * 6 4 3 8 8 N 1.46904 * 109.47392 * 89.99820 * 7 6 4 9 9 C 1.47960 * 110.99975 * 190.00152 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56563 * 8 7 6 21 21 C 1.38232 * 120.00172 * 0.25348 * 6 4 3 22 22 C 1.50700 * 120.00478 * 179.72943 * 21 6 4 23 23 C 1.38234 * 120.00261 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47118 * 89.99713 * 1 2 3 25 25 H 1.09001 * 109.47017 * 209.99666 * 1 2 3 26 26 H 1.08996 * 109.47594 * 329.99572 * 1 2 3 27 27 H 1.08000 * 120.00022 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47071 * 270.01741 * 5 4 3 29 29 H 1.09000 * 109.47155 * 30.02172 * 5 4 3 30 30 H 1.09001 * 109.47044 * 150.02433 * 5 4 3 31 31 H 1.09003 * 109.46888 * 329.99982 * 7 6 4 32 32 H 1.09005 * 109.47315 * 210.00305 * 7 6 4 33 33 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 34 34 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 35 35 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 38 38 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 39 39 H 1.08997 * 109.46929 * 89.99745 * 22 21 6 40 40 H 1.08996 * 109.47195 * 210.00168 * 22 21 6 41 41 H 1.09002 * 109.46602 * 329.99831 * 22 21 6 42 42 H 1.07993 * 120.00217 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5024 -0.0011 6 6 4.2716 0.0002 -0.0016 7 6 5.7786 0.0002 -0.0028 8 7 6.2694 -0.0004 1.3818 9 6 7.7287 0.2395 1.4272 10 6 7.7737 -0.8684 2.4950 11 8 7.6309 -0.3848 3.8320 12 6 8.9323 -1.8186 2.3347 13 1 9.6512 -1.6651 1.5434 14 6 9.0748 -2.8840 3.1983 15 7 8.1998 -3.0706 4.1622 16 14 10.5106 -4.0621 2.9991 17 1 10.1193 -5.1705 2.0916 18 1 11.6705 -3.3360 2.4222 19 1 10.8836 -4.6165 4.3254 20 6 6.4603 -1.3833 1.8788 21 6 3.5806 -1.1970 -0.0074 22 6 4.3341 -2.5021 -0.0148 23 6 2.1981 -1.1971 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1325 0.0004 28 1 4.5148 2.8170 -1.0289 29 1 3.7451 3.2621 0.5131 30 1 5.2867 2.3721 0.5120 31 1 6.1415 0.8905 -0.5165 32 1 6.1416 -0.8895 -0.5173 33 1 8.0002 1.2251 1.8054 34 1 8.2470 -0.0191 0.5039 35 1 7.6295 -1.0803 4.5038 36 1 8.2998 -3.8203 4.7695 37 1 6.6052 -2.1184 1.0872 38 1 5.7202 -1.6920 2.6171 39 1 4.5164 -2.8221 1.0111 40 1 3.7447 -3.2590 -0.5322 41 1 5.2861 -2.3690 -0.5286 42 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191917470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = -21.896516 kcal Electronic energy + Delta-G solvation = -21784.435482 eV Core-core repulsion = 18729.012209 eV Total energy + Delta-G solvation = -3055.423273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31132 -40.07065 -36.42273 -34.66051 -34.47430 -34.10714 -30.76936 -28.84999 -28.31336 -27.73872 -26.66731 -26.15183 -23.55360 -21.64661 -20.81474 -20.41462 -19.18495 -17.32987 -17.09836 -16.88333 -16.73741 -15.84144 -15.59024 -15.20397 -14.93815 -14.66316 -14.22062 -14.05172 -13.92866 -13.87530 -13.75360 -13.55656 -13.40012 -13.30157 -13.10173 -12.86574 -12.66677 -12.54687 -12.34077 -12.22446 -12.03127 -11.94040 -11.65624 -11.52033 -11.17858 -10.64076 -10.11813 -9.51985 -9.39641 -9.21565 -8.23588 -6.41909 0.46501 0.51741 1.40926 1.43508 1.53370 2.37143 2.74829 2.97748 3.29023 3.81800 3.85115 4.00336 4.03287 4.06881 4.24064 4.29072 4.38079 4.44838 4.50782 4.60402 4.61325 4.68725 4.73796 4.79889 4.80669 4.83882 4.88590 4.90875 5.02332 5.05583 5.12139 5.17178 5.39584 5.41271 5.42999 5.49213 5.68378 5.72135 5.75013 5.88659 6.00096 6.21059 6.34914 6.63486 7.31223 7.51226 8.80999 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.004716 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.505774 B = 5936.176329 C = 6405.501628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.075 4.075 5 C -0.112 4.112 6 C -0.094 4.094 7 C 0.056 3.944 8 N -0.471 5.471 9 C 0.016 3.984 10 C 0.215 3.785 11 O -0.585 6.585 12 C -0.561 4.561 13 H 0.064 0.936 14 C 0.029 3.971 15 N -0.918 5.918 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.281 1.281 20 C 0.011 3.989 21 C -0.085 4.085 22 C -0.116 4.116 23 C -0.141 4.141 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.381 0.619 36 H 0.273 0.727 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 4.526 -10.273 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.090 4.090 3 C -0.157 4.157 4 C -0.075 4.075 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.071 4.071 8 N -0.194 5.194 9 C -0.112 4.112 10 C 0.174 3.826 11 O -0.395 6.395 12 C -0.599 4.599 13 H 0.082 0.918 14 C -0.171 4.171 15 N -0.559 5.559 16 Si 0.789 3.211 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.206 1.206 20 C -0.118 4.118 21 C -0.086 4.086 22 C -0.172 4.172 23 C -0.159 4.159 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.250 5.443 -10.103 16.786 hybrid contribution 1.344 -1.890 0.060 2.320 sum -10.906 3.553 -10.043 15.246 Atomic orbital electron populations 1.20790 0.89043 1.03431 1.03120 1.20213 0.97546 0.92639 0.98636 1.21117 0.93062 0.98497 1.02991 1.19979 0.94278 0.95104 0.98184 1.20814 1.00064 0.93360 1.02656 1.19537 0.94689 0.93012 1.02248 1.21630 0.92273 1.01606 0.91632 1.68542 1.13948 1.19237 1.17664 1.24067 0.89109 0.99864 0.98198 1.20178 0.91458 0.90230 0.80698 1.86027 1.96140 1.39510 1.17871 1.21916 1.11644 1.10733 1.15616 0.91774 1.25782 0.98434 0.98670 0.94177 1.69521 1.36750 1.31545 1.18080 0.85460 0.79302 0.78658 0.77632 1.19788 1.19384 1.20643 1.24499 0.99067 0.89870 0.98381 1.19951 0.94497 0.94927 0.99189 1.20947 0.99984 0.94389 1.01919 1.21058 0.92912 0.98626 1.03297 0.90003 0.91084 0.90661 0.84253 0.90006 0.90576 0.92239 0.89611 0.93365 0.90604 0.90370 0.76650 0.91758 0.91867 0.93766 0.92448 0.89982 0.91910 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.23 0.71 -1.11 16 2 C -0.09 -2.24 5.88 -19.87 -0.12 -2.36 16 3 C -0.14 -3.58 9.36 22.27 0.21 -3.38 16 4 C -0.07 -2.22 5.88 -19.87 -0.12 -2.33 16 5 C -0.11 -2.85 9.19 71.24 0.65 -2.19 16 6 C -0.09 -3.14 5.44 -19.87 -0.11 -3.25 16 7 C 0.06 1.96 3.84 85.56 0.33 2.29 16 8 N -0.47 -19.85 6.10 -914.72 -5.58 -25.43 16 9 C 0.02 0.70 7.34 86.41 0.63 1.34 16 10 C 0.22 11.06 1.40 -10.89 -0.02 11.05 16 11 O -0.59 -32.75 13.48 -148.98 -2.01 -34.76 16 12 C -0.56 -30.06 8.61 25.60 0.22 -29.84 16 13 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 14 C 0.03 1.55 5.40 84.66 0.46 2.00 16 15 N -0.92 -49.89 11.20 21.45 0.24 -49.65 16 16 Si 0.96 41.57 29.54 68.60 2.03 43.59 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 20 C 0.01 0.52 5.65 86.37 0.49 1.01 16 21 C -0.09 -2.72 5.88 -19.86 -0.12 -2.83 16 22 C -0.12 -3.57 8.15 71.24 0.58 -2.99 16 23 C -0.14 -3.90 9.36 22.27 0.21 -3.69 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 30 H 0.06 1.75 6.67 -2.39 -0.02 1.73 16 31 H 0.09 2.70 6.64 -2.39 -0.02 2.68 16 32 H 0.05 1.69 5.27 -2.38 -0.01 1.67 16 33 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.08 3.13 7.88 -2.39 -0.02 3.11 16 35 H 0.38 21.81 6.60 -74.06 -0.49 21.32 16 36 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.06 2.91 5.95 -2.39 -0.01 2.89 16 38 H 0.04 2.27 8.02 -2.39 -0.02 2.25 16 39 H 0.06 2.00 6.96 -2.39 -0.02 1.98 16 40 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 41 H 0.06 1.98 5.33 -2.39 -0.01 1.96 16 42 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -60.35 331.35 -0.77 -61.13 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.53 Total: 41.42 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.02 Total: -36.29 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -5.34 Total: -75.09 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -2.01 Total: -34.76 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -60.35 -0.77 -61.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.229 kcal (2) G-P(sol) polarization free energy of solvation -60.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds