Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99648 * 2 1 4 4 C 1.38211 * 119.99937 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00094 * 0.02862 * 4 3 2 6 6 C 1.38211 * 119.99823 * 359.69666 * 5 4 3 7 7 C 1.38207 * 120.00406 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.46897 * 303.93743 * 8 7 2 10 10 C 1.52999 * 109.47080 * 183.93181 * 8 7 2 11 11 C 1.50703 * 109.46803 * 63.93431 * 8 7 2 12 12 O 1.21280 * 120.00315 * 6.81159 * 11 8 7 13 13 N 1.34778 * 119.99637 * 186.81168 * 11 8 7 14 14 C 1.46498 * 119.99897 * 180.02562 * 13 11 8 15 15 H 1.09002 * 109.47372 * 324.99542 * 14 13 11 16 16 C 1.52995 * 109.47498 * 84.99724 * 14 13 11 17 17 C 1.50699 * 109.46889 * 204.99953 * 14 13 11 18 18 H 1.08001 * 120.00229 * 359.97438 * 17 14 13 19 19 C 1.37887 * 119.99684 * 179.72520 * 17 14 13 20 20 N 1.31512 * 120.00077 * 0.27207 * 19 17 14 21 21 Si 1.86803 * 119.99773 * 180.27135 * 19 17 14 22 22 H 1.48506 * 109.46724 * 59.99955 * 21 19 17 23 23 H 1.48493 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47219 * 299.99874 * 21 19 17 25 25 H 1.09004 * 109.46988 * 271.60475 * 1 2 3 26 26 H 1.08995 * 109.47359 * 31.61052 * 1 2 3 27 27 H 1.09005 * 109.46753 * 151.60874 * 1 2 3 28 28 H 1.08001 * 119.99665 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.00157 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.00154 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.00344 * 180.30203 * 6 5 4 32 32 H 1.09005 * 109.46849 * 189.22899 * 9 8 7 33 33 H 1.09001 * 109.47119 * 309.21707 * 9 8 7 34 34 H 1.08991 * 109.47678 * 69.22283 * 9 8 7 35 35 H 1.09000 * 109.47356 * 300.00185 * 10 8 7 36 36 H 1.08998 * 109.46990 * 60.00346 * 10 8 7 37 37 H 1.09003 * 109.46930 * 180.02562 * 10 8 7 38 38 H 0.97002 * 120.00301 * 359.97438 * 13 11 8 39 39 H 1.09006 * 109.47168 * 300.00082 * 16 14 13 40 40 H 1.08996 * 109.47355 * 59.99711 * 16 14 13 41 41 H 1.08998 * 109.47394 * 180.02562 * 16 14 13 42 42 H 0.97000 * 119.99702 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1967 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 6 0.4918 -2.5408 1.1969 10 6 2.4360 -3.6632 0.1001 11 6 0.6534 -2.6252 -1.2761 12 8 0.7913 -1.8029 -2.1568 13 7 -0.2076 -3.6492 -1.4391 14 6 -0.9765 -3.7693 -2.6803 15 1 -1.2328 -2.7752 -3.0466 16 6 -0.1378 -4.4995 -3.7311 17 6 -2.2392 -4.5480 -2.4156 18 1 -2.4480 -4.9170 -1.4222 19 6 -3.1306 -4.7850 -3.4405 20 7 -2.8762 -4.3362 -4.6502 21 14 -4.6996 -5.7438 -3.1107 22 1 -5.5088 -5.0324 -2.0887 23 1 -5.4818 -5.8603 -4.3676 24 1 -4.3556 -7.1001 -2.6136 25 1 -0.3633 0.0288 1.0273 26 1 -0.3634 0.8751 -0.5386 27 1 -0.3633 -0.9041 -0.4887 28 1 1.6581 2.1327 0.0004 29 1 4.1203 2.1328 0.0001 30 1 5.3517 0.0003 0.0005 31 1 4.1207 -2.1321 0.0111 32 1 0.0694 -3.5411 1.2927 33 1 1.0390 -2.2891 2.1055 34 1 -0.3115 -1.8201 1.0451 35 1 3.1149 -3.6355 -0.7523 36 1 3.0084 -3.5741 1.0234 37 1 1.8911 -4.6072 0.0996 38 1 -0.3177 -4.3072 -0.7348 39 1 0.7756 -3.9362 -3.9226 40 1 0.1185 -5.4936 -3.3649 41 1 -0.7097 -4.5884 -4.6548 42 1 -3.5035 -4.5026 -5.3711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194623361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -21.675548 kcal Electronic energy + Delta-G solvation = -22050.200553 eV Core-core repulsion = 18994.786862 eV Total energy + Delta-G solvation = -3055.413691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51367 -38.28556 -35.13832 -34.63435 -32.67531 -32.25399 -29.84655 -28.50791 -27.61915 -26.34386 -25.24493 -23.80768 -22.01705 -21.16212 -20.12630 -18.91486 -17.23055 -16.19134 -15.72739 -15.34245 -15.21203 -14.69626 -14.22664 -14.13673 -13.91908 -13.49659 -13.20444 -12.85429 -12.45312 -12.30654 -12.11540 -11.93210 -11.83903 -11.78776 -11.63685 -11.52288 -11.09994 -11.07093 -10.93770 -10.72719 -10.60812 -10.35616 -10.24540 -10.22143 -9.04049 -8.90747 -8.58035 -8.52267 -8.31554 -7.86277 -6.11398 -4.20821 1.56051 1.60435 3.25435 3.30946 3.31792 3.43595 3.85979 4.22075 4.42139 4.67453 4.94147 5.09494 5.12679 5.19074 5.20907 5.25582 5.44586 5.51997 5.63206 5.72285 5.81162 5.83747 5.86975 5.94794 5.98825 6.11636 6.14728 6.25045 6.31774 6.51384 6.66746 6.67989 6.84214 6.92114 6.98924 7.17224 7.21397 7.49168 7.58724 7.70962 7.93153 8.16375 8.69924 8.79995 9.17067 9.47067 10.94446 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.004592 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.801238 B = 6096.128360 C = 6178.411447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.049 4.049 8 C -0.048 4.048 9 C -0.152 4.152 10 C -0.139 4.139 11 C 0.513 3.487 12 O -0.544 6.544 13 N -0.707 5.707 14 C 0.266 3.734 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.387 0.613 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 5.025 12.146 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.051 4.051 9 C -0.209 4.209 10 C -0.197 4.197 11 C 0.297 3.703 12 O -0.422 6.422 13 N -0.355 5.355 14 C 0.164 3.836 15 H 0.065 0.935 16 C -0.205 4.205 17 C -0.572 4.572 18 H 0.078 0.922 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.220 0.780 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.108 0.892 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.196 5.604 11.278 16.203 hybrid contribution -0.823 -0.844 0.331 1.224 sum 9.373 4.759 11.609 15.661 Atomic orbital electron populations 1.21144 0.91510 1.04138 1.01256 1.19652 0.96022 0.92382 0.97212 1.20962 0.94215 0.97305 1.01737 1.21030 0.94274 0.97771 1.01078 1.20999 0.99376 0.92573 1.02030 1.21093 0.93542 0.98223 1.00412 1.19233 0.93123 0.93034 0.99573 1.19786 0.95904 0.93974 0.95469 1.22180 0.99293 1.03281 0.96141 1.21899 0.98787 0.96718 1.02279 1.20067 0.80447 0.82041 0.87728 1.90688 1.66169 1.41816 1.43519 1.46525 1.41417 1.26416 1.21173 1.18712 0.88157 0.97408 0.79324 0.93465 1.22069 0.97884 0.97645 1.02894 1.21180 1.04190 1.35994 0.95833 0.92175 1.24884 0.98253 0.95616 0.94895 1.69897 1.36422 1.45093 1.00656 0.86525 0.82793 0.80269 0.77604 1.20187 1.21152 1.20176 0.91521 0.91851 0.89938 0.86428 0.86596 0.86538 0.85866 0.91676 0.91910 0.90559 0.91859 0.91581 0.91608 0.78033 0.96726 0.95544 0.89249 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 7.70 36.01 0.28 -1.64 16 2 C -0.05 -0.83 5.24 -104.62 -0.55 -1.37 16 3 C -0.12 -1.73 9.71 -39.58 -0.38 -2.12 16 4 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 5 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 6 C -0.11 -1.60 8.98 -39.58 -0.36 -1.95 16 7 C -0.05 -0.77 4.24 -104.62 -0.44 -1.21 16 8 C -0.05 -0.73 0.63 -156.81 -0.10 -0.82 16 9 C -0.15 -1.95 7.73 37.16 0.29 -1.66 16 10 C -0.14 -1.77 7.10 37.16 0.26 -1.50 16 11 C 0.51 10.19 4.53 -10.98 -0.05 10.14 16 12 O -0.54 -13.05 14.30 5.56 0.08 -12.97 16 13 N -0.71 -14.58 4.91 -54.93 -0.27 -14.85 16 14 C 0.27 6.73 2.56 -69.09 -0.18 6.56 16 15 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 16 C -0.15 -3.67 9.26 37.15 0.34 -3.33 16 17 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.79 5.31 -17.82 -0.09 1.69 16 20 N -0.88 -24.88 11.33 55.43 0.63 -24.25 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H 0.07 0.85 7.35 -51.93 -0.38 0.47 16 26 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 27 H 0.08 1.50 3.83 -51.93 -0.20 1.30 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.48 5.90 -52.48 -0.31 1.17 16 32 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 33 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 34 H 0.08 1.03 4.50 -51.93 -0.23 0.80 16 35 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 36 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 37 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.39 6.97 7.69 -40.82 -0.31 6.65 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -30.77 329.45 -7.93 -38.69 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.23 Total: 8.47 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.07 Total: -15.56 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.36 Total: -39.11 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.77 -7.93 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194623361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.016 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds