Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99648 * 2 1 4 4 C 1.38211 * 119.99937 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00094 * 0.02862 * 4 3 2 6 6 C 1.38211 * 119.99823 * 359.69666 * 5 4 3 7 7 C 1.38207 * 120.00406 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.46897 * 303.93743 * 8 7 2 10 10 C 1.52999 * 109.47080 * 183.93181 * 8 7 2 11 11 C 1.50703 * 109.46803 * 63.93431 * 8 7 2 12 12 O 1.21280 * 120.00315 * 6.81159 * 11 8 7 13 13 N 1.34778 * 119.99637 * 186.81168 * 11 8 7 14 14 C 1.46498 * 119.99897 * 180.02562 * 13 11 8 15 15 H 1.09002 * 109.47372 * 324.99542 * 14 13 11 16 16 C 1.52995 * 109.47498 * 84.99724 * 14 13 11 17 17 C 1.50699 * 109.46889 * 204.99953 * 14 13 11 18 18 H 1.08001 * 120.00229 * 359.97438 * 17 14 13 19 19 C 1.37887 * 119.99684 * 179.72520 * 17 14 13 20 20 N 1.31512 * 120.00077 * 0.27207 * 19 17 14 21 21 Si 1.86803 * 119.99773 * 180.27135 * 19 17 14 22 22 H 1.48506 * 109.46724 * 59.99955 * 21 19 17 23 23 H 1.48493 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47219 * 299.99874 * 21 19 17 25 25 H 1.09004 * 109.46988 * 271.60475 * 1 2 3 26 26 H 1.08995 * 109.47359 * 31.61052 * 1 2 3 27 27 H 1.09005 * 109.46753 * 151.60874 * 1 2 3 28 28 H 1.08001 * 119.99665 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.00157 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.00154 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.00344 * 180.30203 * 6 5 4 32 32 H 1.09005 * 109.46849 * 189.22899 * 9 8 7 33 33 H 1.09001 * 109.47119 * 309.21707 * 9 8 7 34 34 H 1.08991 * 109.47678 * 69.22283 * 9 8 7 35 35 H 1.09000 * 109.47356 * 300.00185 * 10 8 7 36 36 H 1.08998 * 109.46990 * 60.00346 * 10 8 7 37 37 H 1.09003 * 109.46930 * 180.02562 * 10 8 7 38 38 H 0.97002 * 120.00301 * 359.97438 * 13 11 8 39 39 H 1.09006 * 109.47168 * 300.00082 * 16 14 13 40 40 H 1.08996 * 109.47355 * 59.99711 * 16 14 13 41 41 H 1.08998 * 109.47394 * 180.02562 * 16 14 13 42 42 H 0.97000 * 119.99702 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1967 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 6 0.4918 -2.5408 1.1969 10 6 2.4360 -3.6632 0.1001 11 6 0.6534 -2.6252 -1.2761 12 8 0.7913 -1.8029 -2.1568 13 7 -0.2076 -3.6492 -1.4391 14 6 -0.9765 -3.7693 -2.6803 15 1 -1.2328 -2.7752 -3.0466 16 6 -0.1378 -4.4995 -3.7311 17 6 -2.2392 -4.5480 -2.4156 18 1 -2.4480 -4.9170 -1.4222 19 6 -3.1306 -4.7850 -3.4405 20 7 -2.8762 -4.3362 -4.6502 21 14 -4.6996 -5.7438 -3.1107 22 1 -5.5088 -5.0324 -2.0887 23 1 -5.4818 -5.8603 -4.3676 24 1 -4.3556 -7.1001 -2.6136 25 1 -0.3633 0.0288 1.0273 26 1 -0.3634 0.8751 -0.5386 27 1 -0.3633 -0.9041 -0.4887 28 1 1.6581 2.1327 0.0004 29 1 4.1203 2.1328 0.0001 30 1 5.3517 0.0003 0.0005 31 1 4.1207 -2.1321 0.0111 32 1 0.0694 -3.5411 1.2927 33 1 1.0390 -2.2891 2.1055 34 1 -0.3115 -1.8201 1.0451 35 1 3.1149 -3.6355 -0.7523 36 1 3.0084 -3.5741 1.0234 37 1 1.8911 -4.6072 0.0996 38 1 -0.3177 -4.3072 -0.7348 39 1 0.7756 -3.9362 -3.9226 40 1 0.1185 -5.4936 -3.3649 41 1 -0.7097 -4.5884 -4.6548 42 1 -3.5035 -4.5026 -5.3711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194623361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = -39.681366 kcal Electronic energy + Delta-G solvation = -22050.981344 eV Core-core repulsion = 18994.786862 eV Total energy + Delta-G solvation = -3056.194482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80281 -39.65293 -36.75721 -36.15854 -34.24898 -33.68510 -31.22327 -30.12185 -28.65214 -27.43223 -27.33061 -25.08293 -23.50632 -22.26463 -21.73594 -20.48684 -18.78049 -17.59773 -17.29130 -16.97445 -16.54898 -16.14545 -15.58565 -15.47463 -15.00874 -14.99731 -14.46165 -14.40667 -13.88204 -13.84186 -13.34149 -13.29915 -13.01196 -12.96501 -12.93272 -12.90874 -12.77946 -12.66357 -12.63680 -12.26324 -12.14903 -12.09903 -11.68495 -11.39614 -11.10148 -10.62519 -10.44327 -9.70069 -9.63801 -9.39451 -8.16492 -6.34184 0.50212 0.55963 1.45175 1.47235 1.55009 1.88592 2.36195 2.61479 3.00675 3.13960 3.55898 3.84537 4.00107 4.12326 4.12446 4.17042 4.29726 4.43025 4.64541 4.69776 4.73610 4.76115 4.80671 4.85379 4.89269 4.90863 4.94785 4.99914 5.10455 5.15373 5.24310 5.26875 5.38084 5.45370 5.63239 5.63843 5.66510 5.70191 5.83726 5.92905 6.10944 6.20148 6.73888 7.01777 7.33847 7.61092 8.89560 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.004592 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.801238 B = 6096.128360 C = 6178.411447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.124 4.124 7 C -0.073 4.073 8 C -0.038 4.038 9 C -0.150 4.150 10 C -0.138 4.138 11 C 0.512 3.488 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.274 3.726 15 H -0.005 1.005 16 C -0.132 4.132 17 C -0.545 4.545 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.270 1.270 23 H -0.288 1.288 24 H -0.263 1.263 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.402 0.598 39 H 0.008 0.992 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.218 4.308 14.482 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.073 4.073 8 C -0.041 4.041 9 C -0.207 4.207 10 C -0.195 4.195 11 C 0.299 3.701 12 O -0.472 6.472 13 N -0.352 5.352 14 C 0.170 3.830 15 H 0.013 0.987 16 C -0.191 4.191 17 C -0.583 4.583 18 H 0.092 0.908 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.212 4.869 13.660 18.331 hybrid contribution -1.072 -0.519 -0.421 1.263 sum 10.140 4.350 13.240 17.235 Atomic orbital electron populations 1.21071 0.92182 1.02161 1.02136 1.19831 0.95933 0.93450 0.98607 1.21233 0.95225 0.97328 1.01789 1.21420 0.93862 0.99223 0.99715 1.21413 1.00983 0.92069 1.00675 1.21396 0.93025 0.99694 1.00053 1.19414 0.94083 0.92930 1.00910 1.19748 0.96100 0.95247 0.93037 1.22189 0.98766 1.03745 0.95957 1.21942 0.98316 0.95776 1.03464 1.20975 0.79677 0.80472 0.88950 1.90655 1.67503 1.43266 1.45804 1.46259 1.41329 1.27473 1.20141 1.18275 0.89029 0.94439 0.81231 0.98738 1.21886 0.97045 0.98238 1.01919 1.21510 1.04533 1.35813 0.96483 0.90811 1.25803 1.01649 0.96519 0.94561 1.70057 1.37628 1.46341 1.01656 0.85407 0.78440 0.79200 0.77352 1.19530 1.21318 1.18777 0.89292 0.92422 0.93088 0.85130 0.83754 0.83579 0.84096 0.90448 0.89554 0.91796 0.92833 0.88443 0.90863 0.76262 0.97314 0.94054 0.91656 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.70 71.24 0.55 -3.22 16 2 C -0.08 -2.43 5.24 -19.87 -0.10 -2.54 16 3 C -0.14 -3.71 9.71 22.27 0.22 -3.49 16 4 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 5 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 6 C -0.12 -3.19 8.98 22.27 0.20 -2.99 16 7 C -0.07 -2.20 4.24 -19.86 -0.08 -2.29 16 8 C -0.04 -1.12 0.63 -53.67 -0.03 -1.15 16 9 C -0.15 -3.59 7.73 71.98 0.56 -3.03 16 10 C -0.14 -3.17 7.10 71.98 0.51 -2.66 16 11 C 0.51 20.77 4.53 87.66 0.40 21.16 16 12 O -0.59 -29.73 14.30 -3.03 -0.04 -29.78 16 13 N -0.70 -29.39 4.91 -446.10 -2.19 -31.58 16 14 C 0.27 14.36 2.56 44.24 0.11 14.47 16 15 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 16 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 17 C -0.55 -28.86 8.73 25.60 0.22 -28.63 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 19 C 0.01 0.79 5.31 84.66 0.45 1.24 16 20 N -0.92 -53.15 11.33 21.45 0.24 -52.91 16 21 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H 0.09 2.28 7.35 -2.39 -0.02 2.26 16 26 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 27 H 0.05 1.93 3.83 -2.38 -0.01 1.92 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.14 2.99 5.90 -2.91 -0.02 2.98 16 32 H 0.08 1.63 7.52 -2.38 -0.02 1.61 16 33 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 34 H 0.06 1.70 4.50 -2.39 -0.01 1.68 16 35 H 0.05 1.34 7.34 -2.39 -0.02 1.32 16 36 H 0.10 1.65 7.69 -2.39 -0.02 1.63 16 37 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.40 14.19 7.69 -92.71 -0.71 13.48 16 39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 3.69 6.08 -2.39 -0.01 3.68 16 42 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.25 329.45 4.45 -64.80 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.31 Total: 30.25 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.11 Total: -24.73 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.95 Total: -84.49 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.04 Total: -29.78 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -69.25 4.45 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194623361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.119 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds