Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00122 * 2 1 4 4 C 1.38214 * 120.00049 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99902 * 0.02807 * 4 3 2 6 6 C 1.38210 * 120.00177 * 359.97218 * 5 4 3 7 7 C 1.38213 * 119.99695 * 179.73241 * 2 1 3 8 8 C 1.50703 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47019 * 56.44518 * 8 7 2 10 10 C 1.52997 * 109.47247 * 176.44490 * 8 7 2 11 11 C 1.50696 * 109.46912 * 296.44255 * 8 7 2 12 12 O 1.21276 * 120.00458 * 353.12388 * 11 8 7 13 13 N 1.34781 * 120.00129 * 173.11852 * 11 8 7 14 14 C 1.46494 * 120.00261 * 180.02562 * 13 11 8 15 15 H 1.08996 * 109.47776 * 35.00098 * 14 13 11 16 16 C 1.53003 * 109.46975 * 274.99895 * 14 13 11 17 17 C 1.50700 * 109.47151 * 155.00389 * 14 13 11 18 18 H 1.08003 * 120.00056 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99960 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00122 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00032 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47644 * 89.99807 * 21 19 17 23 23 H 1.48500 * 109.47367 * 210.00124 * 21 19 17 24 24 H 1.48502 * 109.47207 * 329.99831 * 21 19 17 25 25 H 1.08996 * 109.47569 * 94.80985 * 1 2 3 26 26 H 1.09006 * 109.47003 * 334.80796 * 1 2 3 27 27 H 1.09002 * 109.47262 * 214.80885 * 1 2 3 28 28 H 1.08000 * 120.00090 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99784 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00100 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.00179 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47329 * 51.04908 * 9 8 7 33 33 H 1.08997 * 109.47306 * 171.05553 * 9 8 7 34 34 H 1.08998 * 109.47163 * 291.05222 * 9 8 7 35 35 H 1.09002 * 109.47185 * 60.00075 * 10 8 7 36 36 H 1.08998 * 109.47117 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47368 * 300.00099 * 10 8 7 38 38 H 0.96998 * 119.99563 * 0.02562 * 13 11 8 39 39 H 1.08995 * 109.47410 * 59.99853 * 16 14 13 40 40 H 1.08998 * 109.47414 * 180.02562 * 16 14 13 41 41 H 1.09011 * 109.47091 * 300.00149 * 16 14 13 42 42 H 0.97000 * 119.99902 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0123 9 6 0.4985 -2.5510 -1.1892 10 6 2.4362 -3.6640 -0.0719 11 6 0.6459 -2.6145 1.2853 12 8 0.7797 -1.7855 2.1603 13 7 -0.2171 -3.6363 1.4515 14 6 -0.9939 -3.7453 2.6887 15 1 -1.2514 -2.7480 3.0452 16 6 -0.1625 -4.4676 3.7508 17 6 -2.2557 -4.5251 2.4227 18 1 -2.4590 -4.9015 1.4310 19 6 -3.1507 -4.7580 3.4453 20 7 -2.9029 -4.3002 4.6530 21 14 -4.7151 -5.7240 3.1154 22 1 -4.4615 -7.1695 3.3418 23 1 -5.7864 -5.2597 4.0330 24 1 -5.1414 -5.5106 1.7089 25 1 -0.3634 -0.0862 -1.0240 26 1 -0.3633 0.9300 0.4375 27 1 -0.3634 -0.8438 0.5866 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0001 30 1 5.3516 -0.0001 0.0005 31 1 4.1206 -2.1324 0.0000 32 1 1.0519 -2.3116 -2.0973 33 1 0.0727 -3.5505 -1.2760 34 1 -0.3030 -1.8255 -1.0504 35 1 3.1102 -3.6292 0.7841 36 1 1.8912 -4.6080 -0.0675 37 1 3.0139 -3.5828 -0.9926 38 1 -0.3239 -4.2995 0.7517 39 1 0.7502 -3.9038 3.9433 40 1 -0.7405 -4.5492 4.6713 41 1 0.0951 -5.4651 3.3944 42 1 -3.5328 -4.4638 5.3723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194623376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -21.783095 kcal Electronic energy + Delta-G solvation = -22052.496234 eV Core-core repulsion = 18997.077879 eV Total energy + Delta-G solvation = -3055.418354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51003 -38.28689 -35.13661 -34.64241 -32.67340 -32.25510 -29.84696 -28.50707 -27.60940 -26.34645 -25.24857 -23.80993 -22.01981 -21.16060 -20.13105 -18.91651 -17.22848 -16.18730 -15.72410 -15.34523 -15.20724 -14.69802 -14.22628 -14.16691 -13.94003 -13.49023 -13.20190 -12.84891 -12.44916 -12.30895 -12.11271 -11.94171 -11.83271 -11.81561 -11.60980 -11.50789 -11.11284 -11.06024 -10.92251 -10.72403 -10.60864 -10.35650 -10.25127 -10.22488 -9.03169 -8.91068 -8.58261 -8.52599 -8.31274 -7.86405 -6.11770 -4.21134 1.56115 1.60759 3.23990 3.31035 3.32915 3.43467 3.86152 4.21957 4.41880 4.67583 4.94079 5.09638 5.12609 5.19294 5.20803 5.25595 5.44516 5.52857 5.63160 5.71963 5.80161 5.83777 5.86596 5.95198 6.00531 6.12621 6.14788 6.25233 6.32348 6.51995 6.67067 6.68152 6.84005 6.92424 6.98889 7.17048 7.21591 7.48921 7.58610 7.70771 7.92976 8.16267 8.69674 8.79796 9.16714 9.46848 10.94076 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.004593 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.630856 B = 6095.271221 C = 6178.349646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.048 4.048 9 C -0.152 4.152 10 C -0.139 4.139 11 C 0.513 3.487 12 O -0.544 6.544 13 N -0.707 5.707 14 C 0.265 3.735 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.387 0.613 39 H 0.014 0.986 40 H 0.089 0.911 41 H 0.025 0.975 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 4.907 -12.116 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.051 4.051 9 C -0.209 4.209 10 C -0.197 4.197 11 C 0.298 3.702 12 O -0.422 6.422 13 N -0.355 5.355 14 C 0.164 3.836 15 H 0.065 0.935 16 C -0.205 4.205 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.728 3.272 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.220 0.780 39 H 0.033 0.967 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.254 5.494 -11.259 16.189 hybrid contribution -0.812 -0.856 -0.316 1.221 sum 9.441 4.638 -11.575 15.641 Atomic orbital electron populations 1.21182 0.91516 1.04029 1.01579 1.19651 0.96031 0.92374 0.97169 1.20971 0.94213 0.97292 1.01736 1.21033 0.94280 0.97769 1.01073 1.20998 0.99372 0.92574 1.02054 1.21092 0.93540 0.98222 1.00423 1.19230 0.93118 0.93045 0.99604 1.19779 0.95878 0.93976 0.95472 1.22164 0.99372 1.03288 0.96071 1.21899 0.98781 0.96711 1.02297 1.20068 0.80474 0.82068 0.87630 1.90685 1.66392 1.41359 1.43767 1.46525 1.41109 1.26274 1.21598 1.18718 0.88056 0.97485 0.79381 0.93458 1.22074 0.97929 0.97625 1.02894 1.21216 1.04138 1.35710 0.96050 0.92122 1.24883 0.98270 0.95622 0.94899 1.69905 1.36356 1.44957 1.00849 0.86467 0.82553 0.79993 0.78194 1.20576 1.21091 1.19854 0.91389 0.91999 0.89713 0.86433 0.86600 0.86543 0.85868 0.91914 0.91672 0.90566 0.91856 0.91612 0.91585 0.78027 0.96716 0.89217 0.95557 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.79 36.00 0.28 -1.68 16 2 C -0.05 -0.82 5.24 -104.63 -0.55 -1.37 16 3 C -0.12 -1.74 9.68 -39.58 -0.38 -2.12 16 4 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 5 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 6 C -0.11 -1.60 8.98 -39.58 -0.36 -1.95 16 7 C -0.05 -0.77 4.25 -104.62 -0.44 -1.22 16 8 C -0.05 -0.72 0.63 -156.82 -0.10 -0.82 16 9 C -0.15 -1.95 7.73 37.16 0.29 -1.66 16 10 C -0.14 -1.76 7.10 37.16 0.26 -1.50 16 11 C 0.51 10.18 4.56 -10.99 -0.05 10.13 16 12 O -0.54 -13.02 14.15 5.56 0.08 -12.94 16 13 N -0.71 -14.56 4.91 -54.94 -0.27 -14.83 16 14 C 0.27 6.72 2.56 -69.08 -0.18 6.54 16 15 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 16 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 17 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 21 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.07 0.88 6.94 -51.93 -0.36 0.52 16 26 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.08 1.57 4.08 -51.93 -0.21 1.35 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.47 5.90 -52.48 -0.31 1.16 16 32 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 33 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 34 H 0.08 1.03 4.45 -51.93 -0.23 0.80 16 35 H 0.06 0.84 7.36 -51.93 -0.38 0.46 16 36 H 0.06 0.78 8.07 -51.93 -0.42 0.37 16 37 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 38 H 0.39 6.96 7.68 -40.82 -0.31 6.65 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 41 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -30.74 329.11 -7.92 -38.65 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.22 Total: 8.51 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.07 Total: -15.61 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.36 Total: -39.06 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.74 -7.92 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194623376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.869 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds