Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00122 * 2 1 4 4 C 1.38214 * 120.00049 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99902 * 0.02807 * 4 3 2 6 6 C 1.38210 * 120.00177 * 359.97218 * 5 4 3 7 7 C 1.38213 * 119.99695 * 179.73241 * 2 1 3 8 8 C 1.50703 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47019 * 56.44518 * 8 7 2 10 10 C 1.52997 * 109.47247 * 176.44490 * 8 7 2 11 11 C 1.50696 * 109.46912 * 296.44255 * 8 7 2 12 12 O 1.21276 * 120.00458 * 353.12388 * 11 8 7 13 13 N 1.34781 * 120.00129 * 173.11852 * 11 8 7 14 14 C 1.46494 * 120.00261 * 180.02562 * 13 11 8 15 15 H 1.08996 * 109.47776 * 35.00098 * 14 13 11 16 16 C 1.53003 * 109.46975 * 274.99895 * 14 13 11 17 17 C 1.50700 * 109.47151 * 155.00389 * 14 13 11 18 18 H 1.08003 * 120.00056 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99960 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00122 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00032 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47644 * 89.99807 * 21 19 17 23 23 H 1.48500 * 109.47367 * 210.00124 * 21 19 17 24 24 H 1.48502 * 109.47207 * 329.99831 * 21 19 17 25 25 H 1.08996 * 109.47569 * 94.80985 * 1 2 3 26 26 H 1.09006 * 109.47003 * 334.80796 * 1 2 3 27 27 H 1.09002 * 109.47262 * 214.80885 * 1 2 3 28 28 H 1.08000 * 120.00090 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99784 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00100 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.00179 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47329 * 51.04908 * 9 8 7 33 33 H 1.08997 * 109.47306 * 171.05553 * 9 8 7 34 34 H 1.08998 * 109.47163 * 291.05222 * 9 8 7 35 35 H 1.09002 * 109.47185 * 60.00075 * 10 8 7 36 36 H 1.08998 * 109.47117 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47368 * 300.00099 * 10 8 7 38 38 H 0.96998 * 119.99563 * 0.02562 * 13 11 8 39 39 H 1.08995 * 109.47410 * 59.99853 * 16 14 13 40 40 H 1.08998 * 109.47414 * 180.02562 * 16 14 13 41 41 H 1.09011 * 109.47091 * 300.00149 * 16 14 13 42 42 H 0.97000 * 119.99902 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0123 9 6 0.4985 -2.5510 -1.1892 10 6 2.4362 -3.6640 -0.0719 11 6 0.6459 -2.6145 1.2853 12 8 0.7797 -1.7855 2.1603 13 7 -0.2171 -3.6363 1.4515 14 6 -0.9939 -3.7453 2.6887 15 1 -1.2514 -2.7480 3.0452 16 6 -0.1625 -4.4676 3.7508 17 6 -2.2557 -4.5251 2.4227 18 1 -2.4590 -4.9015 1.4310 19 6 -3.1507 -4.7580 3.4453 20 7 -2.9029 -4.3002 4.6530 21 14 -4.7151 -5.7240 3.1154 22 1 -4.4615 -7.1695 3.3418 23 1 -5.7864 -5.2597 4.0330 24 1 -5.1414 -5.5106 1.7089 25 1 -0.3634 -0.0862 -1.0240 26 1 -0.3633 0.9300 0.4375 27 1 -0.3634 -0.8438 0.5866 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0001 30 1 5.3516 -0.0001 0.0005 31 1 4.1206 -2.1324 0.0000 32 1 1.0519 -2.3116 -2.0973 33 1 0.0727 -3.5505 -1.2760 34 1 -0.3030 -1.8255 -1.0504 35 1 3.1102 -3.6292 0.7841 36 1 1.8912 -4.6080 -0.0675 37 1 3.0139 -3.5828 -0.9926 38 1 -0.3239 -4.2995 0.7517 39 1 0.7502 -3.9038 3.9433 40 1 -0.7405 -4.5492 4.6713 41 1 0.0951 -5.4651 3.3944 42 1 -3.5328 -4.4638 5.3723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194623376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -39.767928 kcal Electronic energy + Delta-G solvation = -22053.276115 eV Core-core repulsion = 18997.077879 eV Total energy + Delta-G solvation = -3056.198235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79943 -39.65231 -36.75938 -36.15833 -34.25255 -33.68024 -31.22330 -30.12101 -28.64194 -27.43587 -27.33403 -25.08459 -23.50902 -22.26283 -21.74011 -20.48722 -18.77948 -17.60013 -17.28620 -16.97181 -16.54531 -16.14278 -15.60422 -15.48886 -15.02179 -14.99703 -14.46111 -14.40767 -13.88288 -13.84240 -13.33595 -13.27935 -13.01940 -12.96721 -12.94593 -12.94091 -12.75123 -12.64101 -12.62704 -12.27801 -12.13631 -12.09094 -11.68667 -11.39989 -11.08735 -10.63388 -10.44498 -9.69827 -9.63867 -9.39211 -8.16762 -6.34367 0.50213 0.56166 1.45019 1.45729 1.56278 1.88766 2.36070 2.61466 3.00637 3.13814 3.56052 3.84423 4.00348 4.12412 4.12674 4.16951 4.29771 4.43975 4.65073 4.67571 4.73661 4.75962 4.81073 4.85527 4.90563 4.91089 4.94940 5.00395 5.10413 5.15424 5.24441 5.27177 5.38093 5.45414 5.63354 5.64072 5.66552 5.70281 5.83933 5.92796 6.11018 6.20242 6.73966 7.01705 7.33755 7.61020 8.89470 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.004593 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.630856 B = 6095.271221 C = 6178.349646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.124 4.124 7 C -0.073 4.073 8 C -0.038 4.038 9 C -0.150 4.150 10 C -0.138 4.138 11 C 0.512 3.488 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.274 3.726 15 H -0.005 1.005 16 C -0.132 4.132 17 C -0.544 4.544 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.263 1.263 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.402 0.598 39 H 0.008 0.992 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 4.185 -14.446 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.073 4.073 8 C -0.041 4.041 9 C -0.207 4.207 10 C -0.195 4.195 11 C 0.300 3.700 12 O -0.472 6.472 13 N -0.352 5.352 14 C 0.170 3.830 15 H 0.013 0.987 16 C -0.191 4.191 17 C -0.582 4.582 18 H 0.092 0.908 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.187 1.187 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.237 0.763 39 H 0.027 0.973 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.293 4.756 -13.634 18.331 hybrid contribution -1.068 -0.529 0.434 1.269 sum 10.225 4.226 -13.199 17.223 Atomic orbital electron populations 1.21101 0.92204 1.02310 1.02179 1.19828 0.95929 0.93446 0.98583 1.21243 0.95232 0.97314 1.01794 1.21421 0.93863 0.99228 0.99720 1.21412 1.00982 0.92065 1.00683 1.21397 0.93018 0.99698 1.00052 1.19412 0.94081 0.92939 1.00917 1.19742 0.96044 0.95252 0.93076 1.22175 0.98868 1.03723 0.95892 1.21942 0.98325 0.95765 1.03475 1.20971 0.79727 0.80501 0.88832 1.90652 1.67706 1.42803 1.46037 1.46258 1.41018 1.27339 1.20573 1.18280 0.88932 0.94503 0.81288 0.98711 1.21891 0.97082 0.98220 1.01928 1.21537 1.04487 1.35533 0.96669 0.90815 1.25799 1.01641 0.96539 0.94570 1.70062 1.37570 1.46213 1.01858 0.85351 0.78104 0.78589 0.78331 1.19650 1.21367 1.18685 0.89281 0.92200 0.93159 0.85150 0.83762 0.83576 0.84078 0.89538 0.90457 0.91806 0.92836 0.90863 0.88441 0.76265 0.97303 0.91626 0.94077 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.79 71.24 0.55 -3.30 16 2 C -0.08 -2.43 5.24 -19.87 -0.10 -2.53 16 3 C -0.14 -3.72 9.68 22.27 0.22 -3.51 16 4 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 6 C -0.12 -3.18 8.98 22.27 0.20 -2.98 16 7 C -0.07 -2.20 4.25 -19.86 -0.08 -2.29 16 8 C -0.04 -1.11 0.63 -53.68 -0.03 -1.14 16 9 C -0.15 -3.58 7.73 71.98 0.56 -3.03 16 10 C -0.14 -3.17 7.10 71.98 0.51 -2.66 16 11 C 0.51 20.76 4.56 87.65 0.40 21.16 16 12 O -0.59 -29.67 14.15 -3.02 -0.04 -29.71 16 13 N -0.70 -29.36 4.91 -446.11 -2.19 -31.55 16 14 C 0.27 14.33 2.56 44.25 0.11 14.45 16 15 H -0.01 -0.31 7.58 -2.39 -0.02 -0.33 16 16 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 17 C -0.54 -28.78 8.73 25.60 0.22 -28.56 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C 0.01 0.78 5.30 84.66 0.45 1.22 16 20 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 21 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H 0.09 2.31 6.94 -2.39 -0.02 2.30 16 26 H 0.06 1.83 8.05 -2.38 -0.02 1.81 16 27 H 0.05 1.94 4.08 -2.39 -0.01 1.93 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.14 2.99 5.90 -2.91 -0.02 2.97 16 32 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.08 1.63 7.51 -2.39 -0.02 1.61 16 34 H 0.06 1.69 4.45 -2.39 -0.01 1.68 16 35 H 0.05 1.33 7.36 -2.39 -0.02 1.32 16 36 H 0.07 1.56 8.07 -2.39 -0.02 1.54 16 37 H 0.10 1.64 7.67 -2.39 -0.02 1.63 16 38 H 0.40 14.19 7.68 -92.71 -0.71 13.47 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 41 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -69.21 329.11 4.46 -64.76 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.31 Total: 30.23 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.11 Total: -24.80 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.95 Total: -84.43 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.04 Total: -29.71 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.21 4.46 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194623376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.988 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds