Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 119.99996 * 2 1 4 4 C 1.38216 * 119.99696 * 179.77171 * 3 2 1 5 5 C 1.38255 * 120.00121 * 0.52348 * 4 3 2 6 6 C 1.50703 * 120.00231 * 179.74958 * 5 4 3 7 7 C 1.53006 * 109.46721 * 264.72807 * 6 5 4 8 8 C 1.50704 * 109.46660 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99931 * 359.72653 * 8 7 6 10 10 N 1.34773 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99864 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47327 * 35.00389 * 11 10 8 13 13 C 1.53005 * 109.47552 * 275.00617 * 11 10 8 14 14 C 1.50697 * 109.47254 * 155.00516 * 11 10 8 15 15 H 1.08004 * 120.00324 * 5.46070 * 14 11 10 16 16 C 1.37878 * 120.00455 * 185.46048 * 14 11 10 17 17 N 1.31520 * 119.99822 * 9.55969 * 16 14 11 18 18 Si 1.86801 * 120.00567 * 189.55628 * 16 14 11 19 19 H 1.48498 * 109.46829 * 84.99571 * 18 16 14 20 20 H 1.48497 * 109.47146 * 204.99749 * 18 16 14 21 21 H 1.48496 * 109.46915 * 324.99858 * 18 16 14 22 22 C 1.38210 * 120.00093 * 359.47412 * 5 4 3 23 23 C 1.50703 * 120.00269 * 180.27708 * 22 5 4 24 24 C 1.38222 * 120.00142 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47163 * 269.98272 * 1 2 3 26 26 H 1.08993 * 109.46967 * 29.98172 * 1 2 3 27 27 H 1.08997 * 109.47074 * 149.98379 * 1 2 3 28 28 H 1.07997 * 119.99979 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00137 * 180.27539 * 4 3 2 30 30 H 1.08994 * 109.47271 * 144.72771 * 6 5 4 31 31 H 1.08998 * 109.47059 * 24.72056 * 6 5 4 32 32 H 1.08994 * 109.47278 * 59.99968 * 7 6 5 33 33 H 1.08998 * 109.46741 * 299.99444 * 7 6 5 34 34 H 0.97002 * 120.00788 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.46797 * 303.67772 * 13 11 10 36 36 H 1.08995 * 109.46988 * 63.67403 * 13 11 10 37 37 H 1.08998 * 109.47141 * 183.68016 * 13 11 10 38 38 H 0.96998 * 120.00360 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.47371 * 89.99828 * 23 22 5 40 40 H 1.08998 * 109.46863 * 210.00166 * 23 22 5 41 41 H 1.08997 * 109.46964 * 329.99684 * 23 22 5 42 42 H 1.08002 * 119.99854 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0048 5 6 4.2717 -0.0001 -0.0014 6 6 5.7787 -0.0001 -0.0019 7 6 6.2881 -0.1256 -1.4392 8 6 7.7952 -0.1250 -1.4397 9 8 8.4019 -0.0283 -0.3941 10 7 8.4686 -0.2269 -2.6027 11 6 9.9336 -0.2270 -2.6033 12 1 10.2973 -0.7407 -1.7134 13 6 10.4437 1.2155 -2.6036 14 6 10.4354 -0.9374 -3.8339 15 1 9.7374 -1.2702 -4.5878 16 6 11.7858 -1.1628 -3.9974 17 7 12.6162 -0.9308 -3.0042 18 14 12.4361 -1.7976 -5.6294 19 1 12.6599 -0.6550 -6.5512 20 1 13.7184 -2.5127 -5.4069 21 1 11.4468 -2.7297 -6.2275 22 6 3.5807 -1.1970 -0.0013 23 6 4.3341 -2.5021 -0.0018 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1325 0.0093 30 1 6.1422 -0.8420 0.5872 31 1 6.1422 0.9312 0.4324 32 1 5.9246 0.7163 -2.0283 33 1 5.9246 -1.0569 -1.8735 34 1 7.9833 -0.3003 -3.4395 35 1 10.0272 1.7480 -3.4587 36 1 10.1355 1.7100 -1.6824 37 1 11.5317 1.2162 -2.6699 38 1 13.5662 -1.0897 -3.1190 39 1 4.5162 -2.8170 1.0258 40 1 3.7449 -3.2617 -0.5155 41 1 5.2863 -2.3718 -0.5159 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194741104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = -46.848583 kcal Electronic energy + Delta-G solvation = -20512.917093 eV Core-core repulsion = 17456.411818 eV Total energy + Delta-G solvation = -3056.505276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90352 -38.74205 -35.12396 -34.49212 -32.48341 -32.31780 -31.21092 -29.05454 -27.29456 -26.78089 -25.20999 -23.55783 -22.10604 -20.92401 -19.95332 -19.32406 -17.13635 -16.13824 -16.07193 -15.32767 -15.21405 -14.79284 -14.67070 -14.32783 -13.98836 -13.35318 -13.23473 -13.17361 -12.97374 -12.57473 -12.43138 -12.30002 -12.12481 -12.06818 -11.74040 -11.39426 -11.18898 -11.03631 -10.97636 -10.83505 -10.75386 -10.65685 -10.34640 -10.26264 -9.10980 -8.98868 -8.79539 -8.49423 -8.40480 -7.89079 -6.13756 -4.19199 1.26835 1.33592 3.25338 3.31946 3.33353 3.45980 3.62426 4.15853 4.40190 4.66387 4.72251 4.87715 4.97468 5.08156 5.19805 5.23142 5.29142 5.34418 5.36731 5.47396 5.56428 5.61430 5.63469 5.68829 5.83587 5.91584 5.98328 6.06221 6.20827 6.37430 6.43536 6.50296 6.69713 6.77227 6.90993 6.98688 7.10032 7.45955 7.57868 7.69035 7.87005 8.08431 8.71368 8.81297 9.17879 9.47182 10.94787 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.003073 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.672492 B = 9108.191552 C = 9337.734100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.082 4.082 6 C -0.065 4.065 7 C -0.136 4.136 8 C 0.499 3.501 9 O -0.557 6.557 10 N -0.711 5.711 11 C 0.262 3.738 12 H 0.055 0.945 13 C -0.141 4.141 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.121 4.121 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.388 0.612 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.542 1.349 4.110 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.082 4.082 6 C -0.103 4.103 7 C -0.176 4.176 8 C 0.284 3.716 9 O -0.436 6.436 10 N -0.358 5.358 11 C 0.160 3.840 12 H 0.073 0.927 13 C -0.200 4.200 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.518 5.518 18 Si 0.725 3.275 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.077 4.077 23 C -0.178 4.178 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.220 0.780 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.862 1.399 4.898 21.475 hybrid contribution 0.183 -0.282 -1.368 1.409 sum -20.679 1.117 3.530 21.008 Atomic orbital electron populations 1.20761 0.91486 1.02552 1.02078 1.19858 0.95824 0.93253 1.00444 1.20967 0.94167 0.97328 1.01965 1.21073 0.94035 0.97686 0.99941 1.19871 0.95874 0.92562 0.99894 1.20326 0.89347 1.04400 0.96180 1.21676 0.93766 1.03878 0.98326 1.20481 0.89281 0.77203 0.84622 1.90651 1.70428 1.50861 1.31672 1.46529 1.10080 1.71858 1.07380 1.18732 0.73331 0.93255 0.98705 0.92743 1.22011 1.02757 0.98014 0.97204 1.21184 0.92526 1.38787 1.04975 0.92109 1.24899 0.96804 0.95131 0.96740 1.69988 1.03651 1.47944 1.30250 0.86525 0.78349 0.78880 0.83726 1.20426 1.21164 1.19903 1.19807 0.93511 0.95081 0.99279 1.20907 1.00542 0.93784 1.02598 1.20873 0.93453 0.97403 1.02166 0.91424 0.91720 0.91737 0.86385 0.85987 0.90040 0.90347 0.89524 0.89439 0.77980 0.95311 0.96173 0.90937 0.92561 0.91051 0.91678 0.90672 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.11 -1.24 9.68 -39.58 -0.38 -1.63 16 5 C -0.08 -1.01 5.13 -104.62 -0.54 -1.55 16 6 C -0.06 -0.89 3.94 -27.88 -0.11 -1.00 16 7 C -0.14 -1.94 5.49 -27.88 -0.15 -2.10 16 8 C 0.50 9.85 7.79 -10.98 -0.09 9.76 16 9 O -0.56 -13.23 15.65 5.56 0.09 -13.14 16 10 N -0.71 -14.82 5.07 -54.93 -0.28 -15.10 16 11 C 0.26 6.71 2.42 -69.08 -0.17 6.54 16 12 H 0.05 1.63 7.53 -51.93 -0.39 1.24 16 13 C -0.14 -3.49 9.36 37.16 0.35 -3.14 16 14 C -0.54 -14.32 8.66 -34.44 -0.30 -14.62 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 17 N -0.88 -25.27 12.16 55.43 0.67 -24.60 16 18 Si 0.90 20.71 29.55 -169.99 -5.02 15.69 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.08 -0.89 5.88 -104.63 -0.62 -1.50 16 23 C -0.12 -1.27 9.22 36.01 0.33 -0.94 16 24 C -0.12 -1.27 9.36 -39.58 -0.37 -1.64 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.08 1.19 6.95 -51.93 -0.36 0.83 16 31 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.12 6.91 -51.93 -0.36 0.76 16 34 H 0.39 6.98 8.53 -40.82 -0.35 6.63 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.93 6.83 -51.93 -0.35 1.57 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.07 0.85 5.43 -51.93 -0.28 0.57 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -31.15 346.80 -8.78 -39.93 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.69 Total: 5.73 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.77 Total: -13.73 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.40 Total: -39.70 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.15 -8.78 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.917 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds