Wall clock time and date at job start Mon Mar 30 2020 01:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47349 * 269.99970 * 3 2 1 5 5 H 1.48497 * 109.47238 * 30.00351 * 3 2 1 6 6 H 1.48502 * 109.46928 * 150.00191 * 3 2 1 7 7 C 1.37873 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00557 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99804 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47368 * 177.27715 * 9 7 2 11 11 C 1.46896 * 111.00207 * 205.14555 * 10 9 7 12 12 C 1.50703 * 109.47411 * 169.99803 * 11 10 9 13 13 C 1.38271 * 119.94320 * 269.73362 * 12 11 10 14 14 C 1.38145 * 120.05489 * 179.72162 * 13 12 11 15 15 C 1.38726 * 119.94099 * 0.56842 * 14 13 12 16 16 O 1.35900 * 120.05592 * 179.68374 * 15 14 13 17 17 C 1.38733 * 119.89297 * 359.69923 * 15 14 13 18 18 C 1.38147 * 119.94055 * 0.02562 * 17 15 14 19 19 C 1.46894 * 111.00164 * 81.19082 * 10 9 7 20 20 C 1.52999 * 109.47277 * 296.02203 * 19 10 9 21 21 C 1.53782 * 113.61664 * 90.66415 * 20 19 10 22 22 C 1.54051 * 86.98529 * 140.02334 * 21 20 19 23 23 C 1.53776 * 87.07746 * 334.57114 * 22 21 20 24 24 H 0.97003 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47610 * 57.27563 * 9 7 2 26 26 H 1.08998 * 109.47437 * 297.27380 * 9 7 2 27 27 H 1.09001 * 109.47594 * 290.00103 * 11 10 9 28 28 H 1.09008 * 109.47207 * 50.00123 * 11 10 9 29 29 H 1.07998 * 119.97203 * 359.96950 * 13 12 11 30 30 H 1.07998 * 120.03104 * 180.24043 * 14 13 12 31 31 H 0.96707 * 114.00213 * 270.01645 * 16 15 14 32 32 H 1.08001 * 120.03282 * 179.97438 * 17 15 14 33 33 H 1.08005 * 119.97034 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.47305 * 176.02311 * 19 10 9 35 35 H 1.09001 * 109.47415 * 56.02011 * 19 10 9 36 36 H 1.09002 * 112.84924 * 319.47020 * 20 19 10 37 37 H 1.08996 * 113.61960 * 254.61660 * 21 20 19 38 38 H 1.08998 * 113.61159 * 25.51859 * 21 20 19 39 39 H 1.09006 * 113.61636 * 220.02420 * 22 21 20 40 40 H 1.09001 * 113.69180 * 89.13081 * 22 21 20 41 41 H 1.09009 * 113.61630 * 270.88156 * 23 22 21 42 42 H 1.09003 * 113.69274 * 139.99155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5775 0.0642 11 6 5.3474 -2.6324 0.6496 12 6 5.7164 -4.0670 0.9272 13 6 5.4170 -4.6318 2.1533 14 6 5.7490 -5.9483 2.4081 15 6 6.3940 -6.7002 1.4370 16 8 6.7275 -7.9936 1.6876 17 6 6.6983 -6.1295 0.2096 18 6 6.3590 -4.8143 -0.0424 19 6 3.9782 -3.2073 -1.2627 20 6 2.5328 -3.3089 -1.7540 21 6 2.0721 -2.0892 -2.5694 22 6 1.3481 -3.0843 -3.4961 23 6 2.3766 -4.1336 -3.0426 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6387 0.8634 26 1 3.8745 -0.7230 -0.9145 27 1 6.0650 -2.2012 -0.0483 28 1 5.3617 -2.0668 1.5814 29 1 4.9195 -4.0444 2.9108 30 1 5.5115 -6.3902 3.3645 31 1 7.6060 -8.1051 2.0762 32 1 7.2008 -6.7127 -0.5479 33 1 6.5961 -4.3694 -0.9975 34 1 4.4112 -4.2056 -1.1987 35 1 4.5578 -2.6040 -1.9614 36 1 1.8368 -3.5951 -0.9655 37 1 1.3982 -1.4286 -2.0241 38 1 2.8887 -1.5550 -3.0551 39 1 1.4216 -2.8292 -4.5534 40 1 0.3280 -3.3097 -3.1851 41 1 3.2764 -4.1574 -3.6575 42 1 1.9497 -5.1231 -2.8787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195575837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:34 Heat of formation + Delta-G solvation = 12.556353 kcal Electronic energy + Delta-G solvation = -21652.101812 eV Core-core repulsion = 18598.172528 eV Total energy + Delta-G solvation = -3053.929284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77853 -38.56056 -37.06903 -35.42998 -32.59995 -30.92300 -30.57085 -28.25641 -27.14333 -24.59864 -24.11310 -22.80846 -22.01212 -21.22753 -19.95504 -18.65953 -18.38328 -16.79105 -15.73779 -15.71508 -15.23730 -14.93034 -14.74265 -14.24691 -14.05875 -13.66384 -13.36248 -13.21993 -12.69434 -12.43191 -12.20218 -11.96234 -11.72401 -11.65432 -11.41372 -11.31004 -11.20710 -10.74225 -10.61089 -10.39868 -10.11932 -9.88693 -9.73456 -9.31813 -9.17766 -9.03899 -8.83060 -8.40864 -8.37365 -7.37414 -6.00873 -3.91684 1.32069 1.46486 3.28198 3.36458 3.37979 3.70043 4.21906 4.44044 4.83235 4.96720 5.03748 5.10107 5.27770 5.45171 5.49597 5.50854 5.53875 5.59634 5.77144 5.82110 5.86476 6.04995 6.13106 6.17548 6.20385 6.37694 6.40753 6.41789 6.48521 6.49364 6.54867 6.72166 6.79636 6.85927 6.91235 6.92877 7.18091 7.37857 7.62866 7.66834 7.69663 7.91595 8.05439 8.70416 9.10058 9.59745 11.10891 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005311 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.115494 B = 5270.919949 C = 6152.515502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.066 3.934 3 Si 0.864 3.136 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.160 3.840 10 N -0.519 5.519 11 C 0.087 3.913 12 C -0.069 4.069 13 C -0.082 4.082 14 C -0.145 4.145 15 C 0.091 3.909 16 O -0.502 6.502 17 C -0.147 4.147 18 C -0.100 4.100 19 C 0.073 3.927 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.145 4.145 24 H 0.262 0.738 25 H 0.023 0.977 26 H -0.012 1.012 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.384 0.616 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 -9.488 -0.070 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.692 3.308 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.525 4.525 8 H 0.108 0.892 9 C 0.034 3.966 10 N -0.243 5.243 11 C -0.041 4.041 12 C -0.069 4.069 13 C -0.100 4.100 14 C -0.164 4.164 15 C 0.047 3.953 16 O -0.311 6.311 17 C -0.166 4.166 18 C -0.118 4.118 19 C -0.055 4.055 20 C -0.098 4.098 21 C -0.169 4.169 22 C -0.184 4.184 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.006 0.994 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.239 0.761 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.230 -9.716 0.005 15.619 hybrid contribution 1.454 1.465 -0.417 2.106 sum 13.684 -8.251 -0.412 15.984 Atomic orbital electron populations 1.69883 1.05851 1.26551 1.51713 1.24830 0.94647 0.98258 0.95715 0.87028 0.80417 0.84917 0.78415 1.20457 1.21370 1.19454 1.21099 0.88497 0.94762 1.48148 0.89177 1.20287 0.97575 0.83799 0.94958 1.62063 1.19067 1.21014 1.22137 1.21103 0.91435 0.91509 1.00005 1.19967 0.96627 0.96692 0.93633 1.20969 0.97744 0.94248 0.97081 1.21382 1.01337 0.94289 0.99382 1.18442 0.99832 0.83531 0.93514 1.84842 1.38846 1.22667 1.84762 1.21304 1.02640 0.95369 0.97238 1.20948 0.98470 0.93562 0.98862 1.22103 0.96865 0.97704 0.88863 1.22372 0.96019 0.96430 0.94949 1.23333 1.00357 0.97121 0.96136 1.22875 0.98440 0.98528 0.98590 1.23011 0.98886 0.97507 0.98850 0.92810 0.95901 0.99399 0.95123 0.90255 0.85295 0.85733 0.76075 0.85905 0.86050 0.92089 0.96391 0.88227 0.86506 0.92743 0.93192 0.90764 0.91566 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.96 55.43 0.77 -25.42 16 2 C 0.07 1.80 4.84 -17.82 -0.09 1.71 16 3 Si 0.86 20.77 27.52 -169.99 -4.68 16.10 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.27 6.46 56.52 0.37 -5.90 16 7 C -0.49 -12.71 5.88 -34.44 -0.20 -12.91 16 8 H 0.09 2.57 5.82 -52.49 -0.31 2.27 16 9 C 0.16 3.66 3.48 -4.98 -0.02 3.64 16 10 N -0.52 -10.36 4.49 -237.52 -1.07 -11.43 16 11 C 0.09 1.45 5.08 -4.98 -0.03 1.42 16 12 C -0.07 -1.02 4.90 -104.60 -0.51 -1.53 16 13 C -0.08 -1.16 9.69 -39.60 -0.38 -1.54 16 14 C -0.15 -1.88 9.99 -39.44 -0.39 -2.27 16 15 C 0.09 1.16 6.70 -39.22 -0.26 0.89 16 16 O -0.50 -5.56 13.50 -19.43 -0.26 -5.82 16 17 C -0.15 -1.84 9.99 -39.43 -0.39 -2.24 16 18 C -0.10 -1.34 7.86 -39.61 -0.31 -1.65 16 19 C 0.07 1.35 4.56 -3.83 -0.02 1.33 16 20 C -0.08 -1.55 2.64 -89.81 -0.24 -1.79 16 21 C -0.13 -2.74 5.89 -25.78 -0.15 -2.89 16 22 C -0.15 -2.61 8.09 -25.78 -0.21 -2.82 16 23 C -0.14 -2.41 7.64 -25.92 -0.20 -2.61 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.02 0.54 6.50 -51.93 -0.34 0.20 16 26 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 27 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 28 H 0.08 1.29 7.74 -51.92 -0.40 0.88 16 29 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.38 2.24 9.06 45.56 0.41 2.66 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.50 7.91 -52.48 -0.42 1.08 16 34 H 0.06 1.05 5.61 -51.93 -0.29 0.76 16 35 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 36 H 0.10 2.23 6.61 -51.93 -0.34 1.88 16 37 H 0.12 2.88 5.26 -51.93 -0.27 2.61 16 38 H 0.05 1.09 7.86 -51.93 -0.41 0.69 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -29.40 327.64 -9.38 -38.78 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.68 Total: 6.11 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.40 Total: -23.25 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.29 Total: -36.85 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.26 Total: -5.82 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.68 Total: 16.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.40 -9.38 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195575837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.334 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds