Wall clock time and date at job start Mon Mar 30 2020 01:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47349 * 269.99970 * 3 2 1 5 5 H 1.48497 * 109.47238 * 30.00351 * 3 2 1 6 6 H 1.48502 * 109.46928 * 150.00191 * 3 2 1 7 7 C 1.37873 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00557 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99804 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47368 * 177.27715 * 9 7 2 11 11 C 1.46896 * 111.00207 * 205.14555 * 10 9 7 12 12 C 1.50703 * 109.47411 * 169.99803 * 11 10 9 13 13 C 1.38271 * 119.94320 * 269.73362 * 12 11 10 14 14 C 1.38145 * 120.05489 * 179.72162 * 13 12 11 15 15 C 1.38726 * 119.94099 * 0.56842 * 14 13 12 16 16 O 1.35900 * 120.05592 * 179.68374 * 15 14 13 17 17 C 1.38733 * 119.89297 * 359.69923 * 15 14 13 18 18 C 1.38147 * 119.94055 * 0.02562 * 17 15 14 19 19 C 1.46894 * 111.00164 * 81.19082 * 10 9 7 20 20 C 1.52999 * 109.47277 * 296.02203 * 19 10 9 21 21 C 1.53782 * 113.61664 * 90.66415 * 20 19 10 22 22 C 1.54051 * 86.98529 * 140.02334 * 21 20 19 23 23 C 1.53776 * 87.07746 * 334.57114 * 22 21 20 24 24 H 0.97003 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47610 * 57.27563 * 9 7 2 26 26 H 1.08998 * 109.47437 * 297.27380 * 9 7 2 27 27 H 1.09001 * 109.47594 * 290.00103 * 11 10 9 28 28 H 1.09008 * 109.47207 * 50.00123 * 11 10 9 29 29 H 1.07998 * 119.97203 * 359.96950 * 13 12 11 30 30 H 1.07998 * 120.03104 * 180.24043 * 14 13 12 31 31 H 0.96707 * 114.00213 * 270.01645 * 16 15 14 32 32 H 1.08001 * 120.03282 * 179.97438 * 17 15 14 33 33 H 1.08005 * 119.97034 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.47305 * 176.02311 * 19 10 9 35 35 H 1.09001 * 109.47415 * 56.02011 * 19 10 9 36 36 H 1.09002 * 112.84924 * 319.47020 * 20 19 10 37 37 H 1.08996 * 113.61960 * 254.61660 * 21 20 19 38 38 H 1.08998 * 113.61159 * 25.51859 * 21 20 19 39 39 H 1.09006 * 113.61636 * 220.02420 * 22 21 20 40 40 H 1.09001 * 113.69180 * 89.13081 * 22 21 20 41 41 H 1.09009 * 113.61630 * 270.88156 * 23 22 21 42 42 H 1.09003 * 113.69274 * 139.99155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5775 0.0642 11 6 5.3474 -2.6324 0.6496 12 6 5.7164 -4.0670 0.9272 13 6 5.4170 -4.6318 2.1533 14 6 5.7490 -5.9483 2.4081 15 6 6.3940 -6.7002 1.4370 16 8 6.7275 -7.9936 1.6876 17 6 6.6983 -6.1295 0.2096 18 6 6.3590 -4.8143 -0.0424 19 6 3.9782 -3.2073 -1.2627 20 6 2.5328 -3.3089 -1.7540 21 6 2.0721 -2.0892 -2.5694 22 6 1.3481 -3.0843 -3.4961 23 6 2.3766 -4.1336 -3.0426 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6387 0.8634 26 1 3.8745 -0.7230 -0.9145 27 1 6.0650 -2.2012 -0.0483 28 1 5.3617 -2.0668 1.5814 29 1 4.9195 -4.0444 2.9108 30 1 5.5115 -6.3902 3.3645 31 1 7.6060 -8.1051 2.0762 32 1 7.2008 -6.7127 -0.5479 33 1 6.5961 -4.3694 -0.9975 34 1 4.4112 -4.2056 -1.1987 35 1 4.5578 -2.6040 -1.9614 36 1 1.8368 -3.5951 -0.9655 37 1 1.3982 -1.4286 -2.0241 38 1 2.8887 -1.5550 -3.0551 39 1 1.4216 -2.8292 -4.5534 40 1 0.3280 -3.3097 -3.1851 41 1 3.2764 -4.1574 -3.6575 42 1 1.9497 -5.1231 -2.8787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195575837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:33 Heat of formation + Delta-G solvation = -6.473535 kcal Electronic energy + Delta-G solvation = -21652.927010 eV Core-core repulsion = 18598.172528 eV Total energy + Delta-G solvation = -3054.754482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85690 -39.98615 -38.17783 -36.79407 -34.59683 -31.91990 -31.85766 -29.99290 -28.59687 -26.11489 -25.51682 -24.04649 -23.49722 -22.45050 -21.48081 -20.21966 -19.28776 -18.73266 -16.94770 -16.79298 -16.58397 -16.25754 -16.12601 -15.94692 -15.60838 -14.96390 -14.64334 -14.41620 -14.32154 -14.03999 -13.46870 -13.36477 -13.11136 -13.00818 -12.97183 -12.82124 -12.65038 -12.38613 -12.14853 -11.81250 -11.65344 -11.39335 -11.32283 -11.04330 -10.83380 -10.70735 -10.42708 -9.85207 -9.43670 -8.91812 -8.12429 -6.05522 0.31056 0.46641 1.35978 1.38905 1.46079 2.42117 2.67852 3.19088 3.33435 3.43005 3.88545 3.94709 3.98860 4.05412 4.11629 4.14441 4.24035 4.37742 4.49156 4.63887 4.70576 4.73245 4.79792 4.82022 4.95908 4.98790 5.00938 5.05817 5.08617 5.14812 5.16526 5.24609 5.40239 5.50806 5.63102 5.67145 5.76064 5.76958 5.94478 5.95421 6.13658 6.50194 6.75196 6.91925 6.95334 7.48764 9.02620 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005311 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.115494 B = 5270.919949 C = 6152.515502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.921 3.079 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.253 1.253 7 C -0.470 4.470 8 H 0.054 0.946 9 C 0.170 3.830 10 N -0.537 5.537 11 C 0.090 3.910 12 C -0.087 4.087 13 C -0.094 4.094 14 C -0.152 4.152 15 C 0.096 3.904 16 O -0.509 6.509 17 C -0.148 4.148 18 C -0.100 4.100 19 C 0.079 3.921 20 C -0.084 4.084 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.021 0.979 26 H -0.012 1.012 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.409 0.591 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.973 -10.767 -0.992 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.183 4.183 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.177 1.177 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.043 3.957 10 N -0.260 5.260 11 C -0.037 4.037 12 C -0.088 4.088 13 C -0.112 4.112 14 C -0.171 4.171 15 C 0.051 3.949 16 O -0.322 6.322 17 C -0.167 4.167 18 C -0.119 4.119 19 C -0.049 4.049 20 C -0.103 4.103 21 C -0.177 4.177 22 C -0.179 4.179 23 C -0.161 4.161 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.006 0.994 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.268 0.732 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.984 -11.017 -0.903 18.620 hybrid contribution 0.627 1.708 -0.084 1.822 sum 15.611 -9.309 -0.987 18.202 Atomic orbital electron populations 1.70031 1.07633 1.27149 1.54143 1.25508 0.95205 1.01630 0.95937 0.86096 0.79716 0.80801 0.78654 1.19914 1.21663 1.17727 1.21188 0.90291 0.93235 1.46118 0.92760 1.20035 0.95214 0.85866 0.94614 1.61931 1.21776 1.19015 1.23316 1.21093 0.89655 0.93164 0.99808 1.19854 0.98411 0.95930 0.94570 1.21043 0.98138 0.94990 0.97063 1.21549 1.01329 0.93889 1.00313 1.18554 0.99010 0.83896 0.93440 1.84778 1.40870 1.21568 1.85031 1.21538 1.02314 0.95145 0.97659 1.21079 0.97956 0.93902 0.98925 1.22073 0.96021 0.98545 0.88214 1.22266 0.96020 0.96749 0.95235 1.23209 1.00119 0.97212 0.97174 1.22813 0.97988 0.97821 0.99235 1.22910 0.99328 0.97236 0.96669 0.93098 0.96063 0.99418 0.93889 0.90544 0.85698 0.84366 0.73231 0.83746 0.84812 0.90313 0.95657 0.92040 0.91155 0.92132 0.90908 0.91975 0.89003 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.59 13.96 21.45 0.30 -57.29 16 2 C 0.01 0.75 4.84 84.65 0.41 1.16 16 3 Si 0.92 43.33 27.52 68.60 1.89 45.22 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.25 -11.14 6.46 99.48 0.64 -10.49 16 7 C -0.47 -25.38 5.88 25.60 0.15 -25.23 16 8 H 0.05 3.29 5.82 -2.91 -0.02 3.27 16 9 C 0.17 7.76 3.48 85.56 0.30 8.06 16 10 N -0.54 -21.20 4.49 -905.37 -4.06 -25.26 16 11 C 0.09 2.87 5.08 85.56 0.43 3.31 16 12 C -0.09 -2.45 4.90 -19.85 -0.10 -2.55 16 13 C -0.09 -2.56 9.69 22.26 0.22 -2.34 16 14 C -0.15 -3.66 9.99 22.36 0.22 -3.44 16 15 C 0.10 2.16 6.70 22.51 0.15 2.31 16 16 O -0.51 -9.66 13.50 -92.42 -1.25 -10.91 16 17 C -0.15 -3.24 9.99 22.37 0.22 -3.01 16 18 C -0.10 -2.42 7.86 22.25 0.17 -2.24 16 19 C 0.08 2.82 4.56 86.30 0.39 3.21 16 20 C -0.08 -3.28 2.64 -10.27 -0.03 -3.31 16 21 C -0.14 -5.84 5.89 31.21 0.18 -5.65 16 22 C -0.14 -4.90 8.09 31.21 0.25 -4.65 16 23 C -0.12 -3.85 7.64 31.12 0.24 -3.61 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H 0.02 0.98 6.50 -2.39 -0.02 0.97 16 26 H -0.01 -0.54 7.18 -2.39 -0.02 -0.56 16 27 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 28 H 0.08 2.43 7.74 -2.38 -0.02 2.41 16 29 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.41 3.37 9.06 -74.05 -0.67 2.70 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.13 2.85 7.91 -2.91 -0.02 2.83 16 34 H 0.08 2.53 5.61 -2.39 -0.01 2.52 16 35 H 0.03 0.87 7.62 -2.39 -0.02 0.86 16 36 H 0.06 2.88 6.61 -2.39 -0.02 2.86 16 37 H 0.07 3.63 5.26 -2.39 -0.01 3.62 16 38 H 0.06 2.40 7.86 -2.39 -0.02 2.38 16 39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 2.44 8.10 -2.38 -0.02 2.42 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.14 327.64 0.38 -64.76 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.28 Total: 21.46 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.22 Total: -37.98 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -3.76 Total: -82.55 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.25 Total: -10.91 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.89 Total: 45.22 kcal Total: -65.14 0.38 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195575837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.285 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds