Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00524 * 3 2 1 5 5 H 1.48499 * 109.46948 * 30.00446 * 3 2 1 6 6 H 1.48496 * 109.46946 * 150.00226 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47118 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47407 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00652 * 179.97438 * 11 10 9 13 13 C 1.38751 * 120.05089 * 0.02562 * 12 11 10 14 14 C 1.38128 * 119.94621 * 179.97438 * 13 12 11 15 15 C 1.38294 * 120.05053 * 359.74790 * 14 13 12 16 16 C 1.38244 * 120.11148 * 0.50487 * 15 14 13 17 17 C 1.50704 * 119.97230 * 179.76634 * 16 15 14 18 18 N 1.46895 * 109.47030 * 269.72871 * 17 16 15 19 19 C 1.46906 * 110.99789 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47053 * 179.97438 * 19 18 17 21 21 C 1.53001 * 117.50207 * 243.74645 * 20 19 18 22 22 C 1.52996 * 117.49528 * 175.08709 * 20 19 18 23 23 C 1.38162 * 120.05653 * 359.49692 * 16 15 14 24 24 H 0.96998 * 119.99891 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47166 * 59.99810 * 9 7 2 26 26 H 1.09004 * 109.46869 * 299.99876 * 9 7 2 27 27 H 1.08999 * 109.47341 * 59.99814 * 10 9 7 28 28 H 1.09004 * 109.47509 * 299.99952 * 10 9 7 29 29 H 1.08000 * 120.03284 * 359.95818 * 13 12 11 30 30 H 1.07995 * 119.97773 * 180.02562 * 14 13 12 31 31 H 1.07995 * 119.94370 * 180.27721 * 15 14 13 32 32 H 1.08996 * 109.46908 * 149.72689 * 17 16 15 33 33 H 1.09002 * 109.46622 * 29.72862 * 17 16 15 34 34 H 1.00899 * 111.00672 * 56.04735 * 18 17 16 35 35 H 1.08992 * 109.47459 * 299.99826 * 19 18 17 36 36 H 1.09004 * 109.47040 * 59.99976 * 19 18 17 37 37 H 1.09000 * 115.54916 * 29.42168 * 20 19 18 38 38 H 1.09002 * 117.49509 * 0.02562 * 21 20 19 39 39 H 1.08995 * 117.49865 * 145.02184 * 21 20 19 40 40 H 1.09007 * 117.49785 * 214.97897 * 22 20 19 41 41 H 1.08995 * 117.50564 * 0.02562 * 22 20 19 42 42 H 1.08004 * 120.03031 * 180.22730 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8996 0.0001 12 6 2.2708 -6.0394 -0.0004 13 6 3.6565 -5.9681 -0.0009 14 6 4.4066 -7.1280 -0.0008 15 6 3.7775 -8.3596 0.0050 16 6 2.3970 -8.4332 0.0002 17 6 1.7148 -9.7770 0.0012 18 7 1.4923 -10.2142 -1.3834 19 6 0.8280 -11.5239 -1.4215 20 6 0.6131 -11.9446 -2.8768 21 6 -0.8297 -12.0976 -3.3624 22 6 0.0362 -13.3385 -3.1313 23 6 1.6423 -7.2760 0.0001 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 4.1483 -5.0066 -0.0016 30 1 5.4851 -7.0731 -0.0008 31 1 4.3657 -9.2653 0.0096 32 1 0.7571 -9.6978 0.5156 33 1 2.3443 -10.5036 0.5150 34 1 2.3586 -10.2334 -1.9003 35 1 1.4515 -12.2624 -0.9178 36 1 -0.1359 -11.4573 -0.9168 37 1 1.3462 -11.5656 -3.5889 38 1 -1.6259 -11.8982 -2.6451 39 1 -1.0458 -11.8196 -4.3939 40 1 0.3894 -13.8765 -4.0112 41 1 -0.1907 -13.9558 -2.2621 42 1 0.5638 -7.3340 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237818796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -21.510578 kcal Electronic energy + Delta-G solvation = -19710.879044 eV Core-core repulsion = 16655.472506 eV Total energy + Delta-G solvation = -3055.406537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07886 -39.13138 -38.40299 -36.05280 -35.43704 -32.59640 -32.23289 -30.59442 -27.94300 -26.95365 -24.91758 -23.53033 -23.25966 -23.17995 -21.81722 -21.25145 -19.10147 -18.14844 -17.12854 -16.95862 -16.88217 -16.79776 -16.51238 -16.34158 -15.57246 -14.98139 -14.85324 -14.43304 -14.33786 -14.23493 -14.18834 -13.49577 -13.23261 -13.02445 -12.83349 -12.61733 -12.56329 -12.43779 -12.35057 -12.15542 -11.82731 -11.60597 -11.56749 -11.38739 -11.18934 -10.93710 -10.62928 -9.82789 -9.34046 -9.08219 -8.27260 -6.41256 0.34662 0.53765 1.40440 1.43044 1.54159 2.27065 2.51196 2.71987 2.92509 3.06962 3.39020 3.83284 3.88043 3.92998 4.04573 4.13555 4.21927 4.24469 4.25854 4.33074 4.42286 4.45474 4.56619 4.66674 4.68410 4.72662 4.78421 4.81657 4.86712 5.06173 5.11036 5.27518 5.30754 5.33852 5.44630 5.45467 5.52495 5.61064 5.68160 5.89602 6.05086 6.08056 6.45086 6.57901 6.73528 7.28864 8.85982 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.002589 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.934903 B =10811.877472 C =11543.845031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.344 6.344 12 C 0.105 3.895 13 C -0.223 4.223 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.046 4.046 17 C 0.107 3.893 18 N -0.695 5.695 19 C 0.093 3.907 20 C -0.158 4.158 21 C -0.187 4.187 22 C -0.170 4.170 23 C -0.153 4.153 24 H 0.267 0.733 25 H -0.003 1.003 26 H -0.002 1.002 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.347 0.653 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -26.347 -2.494 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.059 3.941 13 C -0.242 4.242 14 C -0.095 4.095 15 C -0.170 4.170 16 C -0.046 4.046 17 C -0.021 4.021 18 N -0.327 5.327 19 C -0.035 4.035 20 C -0.177 4.177 21 C -0.224 4.224 22 C -0.207 4.207 23 C -0.173 4.173 24 H 0.076 0.924 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.091 -25.869 -2.550 26.698 hybrid contribution 0.617 0.852 0.178 1.067 sum 6.708 -25.017 -2.372 26.009 Atomic orbital electron populations 1.70126 1.08087 1.28253 1.50587 1.26076 0.95856 1.03785 0.94142 0.85258 0.78557 0.77403 0.78683 1.19510 1.20629 1.18257 1.21393 0.93831 0.90965 1.52172 0.91064 1.18970 0.94570 0.91475 0.95935 1.22847 0.95371 0.80250 1.00426 1.86084 1.37585 1.13831 1.88335 1.19535 0.91188 0.86811 0.96533 1.21510 0.92468 1.01061 1.09126 1.21233 1.00863 0.91146 0.96272 1.21222 0.93499 0.98499 1.03824 1.19682 0.93666 0.93918 0.97378 1.20809 0.99878 0.91332 0.90114 1.60393 1.30272 1.29063 1.13010 1.21513 0.99070 0.88521 0.94427 1.22256 0.97598 1.00494 0.97339 1.23070 0.93912 1.02912 1.02470 1.23056 1.03458 0.90316 1.03894 1.20405 1.00340 0.89546 1.06964 0.92423 0.98448 0.98368 0.92192 0.92275 0.85574 0.83011 0.83015 0.90409 0.91889 0.83377 0.93582 0.91282 0.87832 0.88963 0.88913 0.87925 0.88039 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 3 Si 0.98 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.56 5.34 29.85 0.16 1.71 16 10 C 0.09 3.87 4.68 71.98 0.34 4.21 16 11 O -0.34 -15.33 10.14 -92.43 -0.94 -16.26 16 12 C 0.10 3.83 6.69 22.51 0.15 3.98 16 13 C -0.22 -6.93 9.04 22.37 0.20 -6.73 16 14 C -0.08 -1.80 10.04 22.26 0.22 -1.58 16 15 C -0.15 -3.13 9.70 22.28 0.22 -2.91 16 16 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 17 C 0.11 1.93 5.81 85.56 0.50 2.43 16 18 N -0.70 -12.46 6.49 -517.93 -3.36 -15.82 16 19 C 0.09 1.36 5.97 86.30 0.51 1.88 16 20 C -0.16 -2.27 5.95 -10.79 -0.06 -2.33 16 21 C -0.19 -2.71 10.18 30.62 0.31 -2.40 16 22 C -0.17 -1.95 10.25 30.62 0.31 -1.64 16 23 C -0.15 -4.86 9.64 22.36 0.22 -4.65 16 24 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.06 2.55 7.66 -2.39 -0.02 2.53 16 28 H 0.06 2.53 7.66 -2.38 -0.02 2.51 16 29 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 33 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.35 5.60 8.71 -89.69 -0.78 4.82 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 1.08 7.87 -2.38 -0.02 1.06 16 37 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.75 353.63 1.89 -65.86 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.21 Total: 17.29 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.67 Total: -39.84 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -3.08 Total: -72.99 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.94 Total: -16.26 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.75 1.89 -65.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237818796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.352 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds