Wall clock time and date at job start Mon Mar 30 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 119.99838 * 2 1 4 4 C 1.38213 * 120.00116 * 180.25644 * 3 2 1 5 5 C 1.38258 * 119.99603 * 359.50972 * 4 3 2 6 6 C 1.50705 * 119.99740 * 180.25762 * 5 4 3 7 7 C 1.52995 * 109.47004 * 126.30910 * 6 5 4 8 8 C 1.53009 * 109.46836 * 246.30674 * 6 5 4 9 9 C 1.53001 * 109.47349 * 6.30343 * 6 5 4 10 10 N 1.46503 * 109.47271 * 180.02562 * 9 6 5 11 11 C 1.34774 * 119.99752 * 180.02562 * 10 9 6 12 12 O 1.21689 * 119.99966 * 0.02562 * 11 10 9 13 13 C 1.46373 * 119.99701 * 179.97438 * 11 10 9 14 14 H 1.08001 * 120.00122 * 0.02562 * 13 11 10 15 15 C 1.40044 * 119.99868 * 179.97438 * 13 11 10 16 16 N 1.30667 * 120.00448 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99895 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47224 * 120.00532 * 17 15 13 20 20 H 1.48499 * 109.47452 * 240.00229 * 17 15 13 21 21 C 1.38206 * 120.00429 * 0.27880 * 5 4 3 22 22 C 1.50699 * 120.00386 * 179.97438 * 21 5 4 23 23 C 1.38208 * 120.00373 * 179.79109 * 2 1 3 24 24 H 1.09001 * 109.47084 * 270.20619 * 1 2 3 25 25 H 1.08989 * 109.47589 * 30.21121 * 1 2 3 26 26 H 1.09008 * 109.46682 * 150.21314 * 1 2 3 27 27 H 1.08002 * 120.00238 * 0.04537 * 3 2 1 28 28 H 1.08004 * 120.00352 * 179.78711 * 4 3 2 29 29 H 1.08997 * 109.47382 * 59.99964 * 7 6 5 30 30 H 1.09007 * 109.46786 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47053 * 299.99635 * 7 6 5 32 32 H 1.09003 * 109.47080 * 77.35145 * 8 6 5 33 33 H 1.09004 * 109.46652 * 197.34907 * 8 6 5 34 34 H 1.09000 * 109.47350 * 317.35047 * 8 6 5 35 35 H 1.08999 * 109.47199 * 300.00643 * 9 6 5 36 36 H 1.09000 * 109.46878 * 60.00260 * 9 6 5 37 37 H 0.96995 * 119.99725 * 0.02562 * 10 9 6 38 38 H 0.97003 * 120.00917 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47454 * 96.19544 * 22 21 5 40 40 H 1.08999 * 109.47418 * 216.20119 * 22 21 5 41 41 H 1.09000 * 109.46782 * 336.19505 * 22 21 5 42 42 H 1.08005 * 120.00158 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0054 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0004 7 6 6.2887 -0.8492 1.1654 8 6 6.2887 -0.5849 -1.3191 9 6 6.2887 1.4346 0.1521 10 7 7.7537 1.4347 0.1515 11 6 8.4275 2.5954 0.2754 12 8 7.8190 3.6431 0.3881 13 6 9.8912 2.5954 0.2753 14 1 10.4313 1.6654 0.1757 15 6 10.5914 3.8015 0.4035 16 7 9.9381 4.9267 0.5236 17 14 12.4594 3.8016 0.4027 18 1 12.9545 2.4095 0.2537 19 1 12.9539 4.6263 -0.7290 20 1 12.9550 4.3693 1.6823 21 6 3.5807 -1.1969 0.0039 22 6 4.3342 -2.5019 0.0087 23 6 2.1981 -1.1969 0.0044 24 1 -0.3633 0.0037 1.0277 25 1 -0.3634 0.8880 -0.5170 26 1 -0.3633 -0.8920 -0.5106 27 1 1.6582 2.1327 0.0007 28 1 4.1204 2.1328 -0.0088 29 1 5.9254 -1.8711 1.0567 30 1 7.3788 -0.8488 1.1657 31 1 5.9254 -0.4324 2.1048 32 1 6.1976 0.1624 -2.1074 33 1 7.3347 -0.8713 -1.2090 34 1 5.6972 -1.4624 -1.5801 35 1 5.9253 2.0397 -0.6785 36 1 5.9254 1.8514 1.0915 37 1 8.2387 0.5995 0.0620 38 1 10.4230 5.7621 0.6127 39 1 4.4199 -2.8683 1.0317 40 1 3.7978 -3.2335 -0.5956 41 1 5.3301 -2.3479 -0.4067 42 1 1.6582 -2.1323 0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258645183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:54 Heat of formation + Delta-G solvation = -23.729419 kcal Electronic energy + Delta-G solvation = -21342.396535 eV Core-core repulsion = 18286.893782 eV Total energy + Delta-G solvation = -3055.502753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30051 -37.64666 -36.15619 -33.38282 -32.43416 -31.93067 -30.97598 -27.60929 -27.06176 -26.70956 -26.59694 -24.63844 -22.06865 -20.89480 -19.63378 -18.88129 -17.31994 -15.82372 -15.68589 -15.18210 -14.70580 -14.35793 -14.22455 -14.07273 -14.04121 -13.67636 -13.41964 -13.17834 -12.90819 -12.60856 -12.34024 -12.27909 -11.91892 -11.65814 -11.63988 -11.44693 -11.23062 -11.08616 -10.96731 -10.92487 -10.57074 -10.44920 -10.38839 -10.16335 -9.86664 -8.83026 -8.64368 -8.28877 -7.56934 -7.42198 -6.15217 -4.60245 1.43426 1.50479 3.14603 3.22679 3.27071 3.80398 4.13008 4.63158 4.67185 4.76306 4.92118 4.97096 5.05645 5.22831 5.25864 5.28001 5.35730 5.44963 5.48443 5.57313 5.60775 5.74738 5.76912 5.81340 5.85899 5.91007 6.02556 6.06518 6.15205 6.18778 6.33946 6.41158 6.44093 6.52262 6.63492 6.65906 6.69861 6.84792 7.14502 7.46429 7.98075 8.16032 8.37476 9.06095 9.59563 10.64210 10.83540 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003854 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.603906 B = 7264.325694 C = 7905.469504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.064 4.064 6 C -0.035 4.035 7 C -0.156 4.156 8 C -0.145 4.145 9 C 0.145 3.855 10 N -0.764 5.764 11 C 0.555 3.445 12 O -0.582 6.582 13 C -0.546 4.546 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.078 4.078 22 C -0.133 4.133 23 C -0.124 4.124 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.267 0.733 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 -14.203 -1.483 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.128 4.128 5 C -0.065 4.065 6 C -0.035 4.035 7 C -0.213 4.213 8 C -0.202 4.202 9 C 0.020 3.980 10 N -0.420 5.420 11 C 0.358 3.642 12 O -0.465 6.465 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.078 4.078 22 C -0.189 4.189 23 C -0.142 4.142 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.211 0.789 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.715 -13.214 -1.379 19.095 hybrid contribution 1.064 -0.228 0.012 1.088 sum -12.651 -13.442 -1.366 18.510 Atomic orbital electron populations 1.20749 0.91598 1.02409 1.02009 1.19837 0.95727 0.93275 1.00718 1.21009 0.94213 0.97339 1.01589 1.21336 0.94087 0.98531 0.98839 1.19650 0.94671 0.92543 0.99595 1.19697 0.90473 0.96978 0.96390 1.22296 1.01548 1.00070 0.97337 1.22068 1.01038 1.00867 0.96202 1.20998 0.83968 0.92738 1.00332 1.46137 1.03880 1.10195 1.81813 1.18208 0.88325 0.81298 0.76345 1.90594 1.70251 1.31120 1.54563 1.20917 0.89832 0.93871 1.53663 0.91494 1.25702 0.99758 0.95056 0.92689 1.70031 1.36255 0.98252 1.35210 0.86343 0.83358 0.79012 0.78177 1.18811 1.20213 1.20210 1.19630 0.93383 0.94764 1.00035 1.21361 1.01416 0.94001 1.02126 1.20787 0.93397 0.97231 1.02748 0.91493 0.91734 0.91900 0.86325 0.85023 0.91021 0.91875 0.92681 0.92217 0.91924 0.91861 0.93274 0.93347 0.78890 0.92240 0.91131 0.92195 0.89099 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.12 5.88 -104.63 -0.62 -1.74 16 3 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 4 C -0.11 -1.64 9.00 -39.58 -0.36 -1.99 16 5 C -0.06 -0.92 4.75 -104.62 -0.50 -1.41 16 6 C -0.03 -0.52 0.50 -155.65 -0.08 -0.60 16 7 C -0.16 -2.11 7.81 37.16 0.29 -1.82 16 8 C -0.14 -1.96 7.67 37.16 0.29 -1.67 16 9 C 0.14 2.84 3.17 -4.04 -0.01 2.83 16 10 N -0.76 -17.14 5.00 -61.72 -0.31 -17.45 16 11 C 0.55 15.95 7.75 -12.99 -0.10 15.85 16 12 O -0.58 -19.14 15.02 5.20 0.08 -19.06 16 13 C -0.55 -15.56 9.54 -35.63 -0.34 -15.90 16 14 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 15 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 16 N -0.77 -23.34 11.83 55.55 0.66 -22.68 16 17 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 18 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.08 -0.97 5.58 -104.63 -0.58 -1.55 16 22 C -0.13 -1.32 7.61 36.01 0.27 -1.05 16 23 C -0.12 -1.44 9.38 -39.58 -0.37 -1.81 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 8.09 -51.94 -0.42 0.10 16 26 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.13 2.11 5.91 -52.48 -0.31 1.80 16 29 H 0.07 0.80 3.95 -51.93 -0.21 0.59 16 30 H 0.06 0.88 6.86 -51.92 -0.36 0.52 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 33 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 34 H 0.06 0.73 5.25 -51.93 -0.27 0.46 16 35 H 0.05 1.03 7.21 -51.93 -0.37 0.66 16 36 H 0.05 1.03 7.81 -51.93 -0.41 0.63 16 37 H 0.38 7.48 6.39 -40.82 -0.26 7.22 16 38 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 39 H 0.07 0.65 7.43 -51.93 -0.39 0.26 16 40 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.90 3.32 -51.93 -0.17 0.73 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -34.39 328.89 -7.90 -42.29 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.04 Total: 7.76 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.22 Total: -11.10 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.35 Total: -40.13 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.08 Total: -19.06 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.39 -7.90 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258645183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.561 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds