Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 119.99838 * 2 1 4 4 C 1.38213 * 120.00116 * 180.25644 * 3 2 1 5 5 C 1.38258 * 119.99603 * 359.50972 * 4 3 2 6 6 C 1.50705 * 119.99740 * 180.25762 * 5 4 3 7 7 C 1.52995 * 109.47004 * 126.30910 * 6 5 4 8 8 C 1.53009 * 109.46836 * 246.30674 * 6 5 4 9 9 C 1.53001 * 109.47349 * 6.30343 * 6 5 4 10 10 N 1.46503 * 109.47271 * 180.02562 * 9 6 5 11 11 C 1.34774 * 119.99752 * 180.02562 * 10 9 6 12 12 O 1.21689 * 119.99966 * 0.02562 * 11 10 9 13 13 C 1.46373 * 119.99701 * 179.97438 * 11 10 9 14 14 H 1.08001 * 120.00122 * 0.02562 * 13 11 10 15 15 C 1.40044 * 119.99868 * 179.97438 * 13 11 10 16 16 N 1.30667 * 120.00448 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99895 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47224 * 120.00532 * 17 15 13 20 20 H 1.48499 * 109.47452 * 240.00229 * 17 15 13 21 21 C 1.38206 * 120.00429 * 0.27880 * 5 4 3 22 22 C 1.50699 * 120.00386 * 179.97438 * 21 5 4 23 23 C 1.38208 * 120.00373 * 179.79109 * 2 1 3 24 24 H 1.09001 * 109.47084 * 270.20619 * 1 2 3 25 25 H 1.08989 * 109.47589 * 30.21121 * 1 2 3 26 26 H 1.09008 * 109.46682 * 150.21314 * 1 2 3 27 27 H 1.08002 * 120.00238 * 0.04537 * 3 2 1 28 28 H 1.08004 * 120.00352 * 179.78711 * 4 3 2 29 29 H 1.08997 * 109.47382 * 59.99964 * 7 6 5 30 30 H 1.09007 * 109.46786 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47053 * 299.99635 * 7 6 5 32 32 H 1.09003 * 109.47080 * 77.35145 * 8 6 5 33 33 H 1.09004 * 109.46652 * 197.34907 * 8 6 5 34 34 H 1.09000 * 109.47350 * 317.35047 * 8 6 5 35 35 H 1.08999 * 109.47199 * 300.00643 * 9 6 5 36 36 H 1.09000 * 109.46878 * 60.00260 * 9 6 5 37 37 H 0.96995 * 119.99725 * 0.02562 * 10 9 6 38 38 H 0.97003 * 120.00917 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47454 * 96.19544 * 22 21 5 40 40 H 1.08999 * 109.47418 * 216.20119 * 22 21 5 41 41 H 1.09000 * 109.46782 * 336.19505 * 22 21 5 42 42 H 1.08005 * 120.00158 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0054 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0004 7 6 6.2887 -0.8492 1.1654 8 6 6.2887 -0.5849 -1.3191 9 6 6.2887 1.4346 0.1521 10 7 7.7537 1.4347 0.1515 11 6 8.4275 2.5954 0.2754 12 8 7.8190 3.6431 0.3881 13 6 9.8912 2.5954 0.2753 14 1 10.4313 1.6654 0.1757 15 6 10.5914 3.8015 0.4035 16 7 9.9381 4.9267 0.5236 17 14 12.4594 3.8016 0.4027 18 1 12.9545 2.4095 0.2537 19 1 12.9539 4.6263 -0.7290 20 1 12.9550 4.3693 1.6823 21 6 3.5807 -1.1969 0.0039 22 6 4.3342 -2.5019 0.0087 23 6 2.1981 -1.1969 0.0044 24 1 -0.3633 0.0037 1.0277 25 1 -0.3634 0.8880 -0.5170 26 1 -0.3633 -0.8920 -0.5106 27 1 1.6582 2.1327 0.0007 28 1 4.1204 2.1328 -0.0088 29 1 5.9254 -1.8711 1.0567 30 1 7.3788 -0.8488 1.1657 31 1 5.9254 -0.4324 2.1048 32 1 6.1976 0.1624 -2.1074 33 1 7.3347 -0.8713 -1.2090 34 1 5.6972 -1.4624 -1.5801 35 1 5.9253 2.0397 -0.6785 36 1 5.9254 1.8514 1.0915 37 1 8.2387 0.5995 0.0620 38 1 10.4230 5.7621 0.6127 39 1 4.4199 -2.8683 1.0317 40 1 3.7978 -3.2335 -0.5956 41 1 5.3301 -2.3479 -0.4067 42 1 1.6582 -2.1323 0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258645183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = -45.523117 kcal Electronic energy + Delta-G solvation = -21343.341581 eV Core-core repulsion = 18286.893782 eV Total energy + Delta-G solvation = -3056.447799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41146 -39.43677 -37.69601 -34.93532 -34.39559 -33.16939 -32.31311 -29.06371 -28.31303 -28.04142 -27.58011 -26.29298 -23.10058 -22.29843 -21.23385 -20.29135 -19.20323 -17.59204 -16.88077 -16.78192 -15.91275 -15.90519 -15.74602 -15.49475 -15.09005 -14.77894 -14.44719 -14.35465 -14.31062 -14.13959 -13.82208 -13.19141 -13.10483 -12.98217 -12.87053 -12.74183 -12.71787 -12.58398 -12.57496 -12.32250 -11.97868 -11.91028 -11.85479 -11.51267 -11.01345 -10.95518 -9.88505 -9.64381 -9.47146 -9.27069 -8.29661 -6.86200 0.44107 0.49290 1.39864 1.40254 1.58487 2.24492 2.46913 2.80475 3.10416 3.60891 3.65250 3.79753 3.98922 4.02920 4.07958 4.09933 4.24125 4.42294 4.53149 4.66227 4.71439 4.74683 4.79407 4.84401 4.88046 4.88401 4.91646 4.99126 5.00873 5.07840 5.13501 5.23678 5.31397 5.32026 5.41218 5.49174 5.62026 5.71401 5.79598 5.87334 6.17113 6.23848 6.27008 6.86138 7.55942 8.49262 8.67427 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003854 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.603906 B = 7264.325694 C = 7905.469504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.023 4.023 7 C -0.153 4.153 8 C -0.142 4.142 9 C 0.152 3.848 10 N -0.747 5.747 11 C 0.535 3.465 12 O -0.636 6.636 13 C -0.572 4.572 14 H 0.089 0.911 15 C 0.026 3.974 16 N -0.824 5.824 17 Si 1.001 2.999 18 H -0.245 1.245 19 H -0.269 1.269 20 H -0.269 1.269 21 C -0.077 4.077 22 C -0.135 4.135 23 C -0.124 4.124 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 -17.691 -1.718 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.084 4.084 6 C -0.023 4.023 7 C -0.209 4.209 8 C -0.199 4.199 9 C 0.027 3.973 10 N -0.403 5.403 11 C 0.339 3.661 12 O -0.524 6.524 13 C -0.609 4.609 14 H 0.107 0.893 15 C -0.189 4.189 16 N -0.453 5.453 17 Si 0.820 3.180 18 H -0.167 1.167 19 H -0.194 1.194 20 H -0.194 1.194 21 C -0.077 4.077 22 C -0.190 4.190 23 C -0.142 4.142 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.513 -16.769 -1.621 21.598 hybrid contribution 0.860 0.859 0.087 1.219 sum -12.653 -15.910 -1.535 20.386 Atomic orbital electron populations 1.20805 0.89176 1.03601 1.02992 1.20233 0.97534 0.92693 0.99085 1.21167 0.93488 0.98769 1.02100 1.21262 0.95235 0.97923 1.01179 1.19632 0.94062 0.93308 1.01359 1.19568 0.91283 0.93460 0.97980 1.22323 1.01252 1.01529 0.95834 1.22076 1.01973 1.01293 0.94550 1.20992 0.82089 0.96254 0.97936 1.45778 1.05106 1.09293 1.80081 1.18681 0.89287 0.81973 0.76116 1.90547 1.71345 1.33453 1.57065 1.21460 0.90039 0.95368 1.53984 0.89268 1.27027 1.06547 0.94071 0.91219 1.70208 1.39452 0.99472 1.36206 0.84934 0.74548 0.80044 0.78497 1.16743 1.19390 1.19389 1.19918 0.94077 0.94900 0.98848 1.21412 1.01212 0.92915 1.03461 1.21186 0.93219 0.98343 1.01411 0.90470 0.91291 0.90043 0.85632 0.88101 0.87602 0.92233 0.94128 0.94185 0.91221 0.88946 0.95691 0.96027 0.77015 0.91629 0.89774 0.89831 0.89207 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 2 C -0.10 -2.09 5.88 -19.87 -0.12 -2.20 16 3 C -0.14 -3.68 9.70 22.27 0.22 -3.47 16 4 C -0.14 -4.41 9.00 22.27 0.20 -4.21 16 5 C -0.08 -2.40 4.75 -19.87 -0.09 -2.49 16 6 C -0.02 -0.68 0.50 -52.92 -0.03 -0.71 16 7 C -0.15 -4.00 7.81 71.98 0.56 -3.44 16 8 C -0.14 -3.72 7.67 71.99 0.55 -3.17 16 9 C 0.15 6.43 3.17 86.38 0.27 6.71 16 10 N -0.75 -34.99 5.00 -467.40 -2.34 -37.33 16 11 C 0.54 32.25 7.75 86.36 0.67 32.92 16 12 O -0.64 -44.57 15.02 -4.31 -0.06 -44.64 16 13 C -0.57 -33.12 9.54 24.83 0.24 -32.89 16 14 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 15 C 0.03 1.48 5.50 85.30 0.47 1.95 16 16 N -0.82 -51.75 11.83 21.83 0.26 -51.50 16 17 Si 1.00 41.56 29.56 68.60 2.03 43.59 16 18 H -0.24 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 C -0.08 -1.75 5.58 -19.87 -0.11 -1.86 16 22 C -0.13 -2.12 7.61 71.24 0.54 -1.58 16 23 C -0.12 -2.52 9.38 22.27 0.21 -2.31 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 27 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 28 H 0.10 3.73 5.91 -2.91 -0.02 3.71 16 29 H 0.11 2.05 3.95 -2.39 -0.01 2.04 16 30 H 0.06 1.59 6.86 -2.38 -0.02 1.57 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.20 8.02 -2.39 -0.02 1.18 16 33 H 0.07 1.70 7.30 -2.38 -0.02 1.69 16 34 H 0.09 1.89 5.25 -2.39 -0.01 1.88 16 35 H 0.02 1.16 7.21 -2.39 -0.02 1.15 16 36 H 0.02 1.01 7.81 -2.39 -0.02 0.99 16 37 H 0.39 15.75 6.39 -92.71 -0.59 15.16 16 38 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 39 H 0.08 1.16 7.43 -2.39 -0.02 1.14 16 40 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.09 1.43 3.32 -2.39 -0.01 1.43 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -79.57 328.89 4.62 -74.96 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.44 Total: 32.57 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.30 Total: -17.65 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.08 Total: -88.83 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.06 Total: -44.64 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -79.57 4.62 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258645183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.432 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds