Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47497 * 269.99749 * 3 2 1 5 5 H 1.48497 * 109.47121 * 30.00451 * 3 2 1 6 6 H 1.48504 * 109.46713 * 149.99773 * 3 2 1 7 7 C 1.37885 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99585 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00321 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53419 * 59.89915 * 9 7 2 11 11 C 1.53123 * 109.50314 * 299.80776 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.40363 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.53005 * 109.47201 * 293.95628 * 15 14 13 17 17 O 1.42896 * 109.47173 * 65.00030 * 16 15 14 18 18 C 1.35899 * 117.00227 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05202 * 359.72292 * 18 17 16 20 20 C 1.38142 * 119.94167 * 179.75019 * 19 18 17 21 21 C 1.38270 * 120.05766 * 0.50231 * 20 19 18 22 22 C 1.38266 * 120.11047 * 359.77464 * 21 20 19 23 23 C 1.38142 * 120.05550 * 359.97144 * 22 21 20 24 24 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 25 25 H 0.96994 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51952 * 302.30623 * 11 9 7 27 27 H 1.09002 * 109.52604 * 62.43444 * 11 9 7 28 28 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 29 29 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 30 30 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 31 31 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 32 32 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 33 33 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 34 34 H 1.09000 * 109.47252 * 184.99852 * 16 15 14 35 35 H 1.09000 * 109.46868 * 304.99886 * 16 15 14 36 36 H 1.07995 * 120.03016 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.97238 * 180.23426 * 20 19 18 38 38 H 1.07995 * 119.94456 * 179.74756 * 21 20 19 39 39 H 1.07999 * 119.97185 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.03156 * 180.02562 * 23 22 21 41 41 H 1.09009 * 109.46169 * 58.27021 * 24 14 13 42 42 H 1.08995 * 109.46669 * 178.25121 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8890 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9370 1.2748 13 6 0.6990 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.4282 -6.0739 -0.1194 16 6 3.4588 -6.0404 1.0110 17 8 2.7990 -6.2374 2.2631 18 6 3.5768 -6.2348 3.3775 19 6 4.9477 -6.0522 3.2675 20 6 5.7355 -6.0448 4.4023 21 6 5.1603 -6.2295 5.6460 22 6 3.7950 -6.4173 5.7577 23 6 3.0021 -6.4204 4.6265 24 6 2.2449 -3.6630 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.9988 -2.4866 2.1406 27 1 -0.3627 -1.7808 1.2357 28 1 -0.9947 -4.0175 0.4064 29 1 -0.9334 -4.0203 2.1859 30 1 0.1922 -6.0241 1.2387 31 1 1.3437 -4.9862 2.1131 32 1 1.8626 -7.0042 -0.0677 33 1 2.9402 -6.0127 -1.0798 34 1 4.1918 -6.8325 0.8580 35 1 3.9633 -5.0742 1.0141 36 1 5.3981 -5.9124 2.2960 37 1 6.8023 -5.8989 4.3176 38 1 5.7784 -6.2274 6.5315 39 1 3.3481 -6.5618 6.7303 40 1 1.9358 -6.5667 4.7143 41 1 2.8823 -3.5966 0.8806 42 1 2.8608 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = -14.630315 kcal Electronic energy + Delta-G solvation = -21758.002415 eV Core-core repulsion = 18702.894228 eV Total energy + Delta-G solvation = -3055.108187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21840 -38.45036 -36.97210 -33.90029 -32.05792 -31.03406 -29.96014 -29.71700 -28.16922 -24.91579 -24.23501 -22.60322 -22.21438 -21.27171 -20.71747 -18.50292 -18.25861 -16.55611 -16.09828 -15.91222 -15.66309 -14.76483 -14.55514 -14.36713 -14.07080 -13.63797 -13.43646 -13.21168 -12.89171 -12.59378 -12.38244 -12.10724 -11.78381 -11.67684 -11.59648 -11.24994 -11.02163 -10.87906 -10.78888 -10.61279 -10.46106 -9.96024 -9.72712 -9.41680 -9.04061 -8.99064 -8.66099 -8.27614 -8.16511 -7.55901 -5.94419 -4.00523 1.30588 1.44275 3.25956 3.32186 3.38887 3.41732 3.77571 4.42394 4.61065 4.78386 4.84801 5.05841 5.09845 5.21435 5.29167 5.34539 5.35730 5.42204 5.55900 5.73523 5.87431 5.95216 6.01066 6.04564 6.24975 6.28389 6.36639 6.42190 6.48206 6.48382 6.62930 6.75257 6.82622 6.86723 7.01798 7.28472 7.44941 7.47989 7.72911 7.78193 7.86536 8.12529 8.21768 8.51624 9.03385 9.63477 11.11585 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.004951 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.386889 B = 5654.469119 C = 6277.761326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.119 4.119 13 C 0.059 3.941 14 N -0.534 5.534 15 C 0.058 3.942 16 C 0.017 3.983 17 O -0.300 6.300 18 C 0.133 3.867 19 C -0.210 4.210 20 C -0.082 4.082 21 C -0.166 4.166 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.064 3.936 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.021 0.979 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 -14.139 7.161 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.257 5.257 15 C -0.071 4.071 16 C -0.060 4.060 17 O -0.213 6.213 18 C 0.088 3.912 19 C -0.229 4.229 20 C -0.100 4.100 21 C -0.185 4.185 22 C -0.100 4.100 23 C -0.173 4.173 24 C -0.063 4.063 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.039 0.961 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.723 -14.032 6.720 16.949 hybrid contribution 1.365 1.009 0.626 1.809 sum 8.088 -13.023 7.346 17.000 Atomic orbital electron populations 1.69895 1.05821 1.26265 1.50668 1.24926 0.94807 0.98882 0.95168 0.86650 0.79863 0.83752 0.78045 1.20705 1.21263 1.20077 1.21138 0.92726 0.90739 1.50692 0.92994 1.18648 0.92610 0.90207 0.94873 0.94839 1.21626 0.99938 0.94782 0.98358 1.21701 0.97358 0.96702 0.99917 1.22231 0.95584 0.97998 0.90992 1.62142 1.23081 1.02016 1.38457 1.22380 0.93164 0.96289 0.95282 1.23833 0.97957 1.01328 0.82891 1.86325 1.35267 1.86386 1.13337 1.19185 0.89741 0.94700 0.87622 1.21283 0.93093 1.08552 0.99923 1.20932 0.99507 0.97377 0.92150 1.21009 0.95176 1.04841 0.97436 1.20945 0.93619 0.97723 0.97750 1.20478 1.00704 1.06324 0.89832 1.22350 0.96656 0.88817 0.98467 0.93086 0.95304 0.89287 0.92431 0.93715 0.92831 0.93086 0.90429 0.88984 0.92394 0.91230 0.85661 0.86074 0.86205 0.85607 0.85299 0.96118 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 11.36 55.43 0.63 -24.99 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.66 5.03 -26.60 -0.13 -2.79 16 12 C -0.12 -2.44 6.09 -26.65 -0.16 -2.60 16 13 C 0.06 1.10 4.61 -3.84 -0.02 1.08 16 14 N -0.53 -9.91 4.86 -234.67 -1.14 -11.05 16 15 C 0.06 0.84 5.93 -3.82 -0.02 0.81 16 16 C 0.02 0.23 4.52 37.16 0.17 0.40 16 17 O -0.30 -4.59 6.81 -19.42 -0.13 -4.73 16 18 C 0.13 1.93 6.69 -39.21 -0.26 1.67 16 19 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 20 C -0.08 -0.94 10.04 -39.60 -0.40 -1.34 16 21 C -0.17 -1.82 10.04 -39.56 -0.40 -2.21 16 22 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 23 C -0.15 -2.05 9.99 -39.43 -0.39 -2.44 16 24 C 0.06 1.36 4.06 -3.84 -0.02 1.34 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.91 8.06 -51.92 -0.42 0.49 16 31 H 0.05 0.99 5.54 -51.93 -0.29 0.70 16 32 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 35 H 0.07 1.05 5.77 -51.93 -0.30 0.75 16 36 H 0.13 1.50 6.30 -52.49 -0.33 1.17 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.02 0.45 6.50 -51.92 -0.34 0.11 16 42 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -29.64 327.26 -10.30 -39.93 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.58 Total: 1.65 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.99 Total: -22.18 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.51 Total: -36.05 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.13 Total: -4.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.64 -10.30 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.300 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds